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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054749 ID=TCONS_00054749|Name=TCONS_00054749|organism=Clytia hemisphaerica|type=transcript|length=1771bp
CATCATCATCTTTGCTATAGAGAATGTACAATTTGATACGCCCTTTTTAA
GGCACAAAATAATAGCTGATAATCTTTATTTCATTATAGGTGAATGATAT
CGTGTTTCATCCACAAATTGGAACACTGGCTACTGTCGGCTCAGATGGAA
AGTACAGTTTCTGGGATAAAGATGCTAGAACCAAACTCAAAACTTCCGAA
AACTGTGGACAATCGATCACAGCTTGTTGTTTTAACGCTGAGggaaatat
ttttgcatattccACTGGCTATGATTGGACTAAGGGTCATGAATTTTACA
ATCCGAACCAAAAGCCAGCGATTTATTTGAGAAGTTGTGCCGATGAGATG
aaaccaaaaaccaaaaaatgaaaattaagaaaCAAGAATGGGATGGGTTT
AATAAAACTTTCTAGAGCATATTCATTCCATGTGATCCAtcagttttatt
ttgaagtcgCTTGCTTTTTGGACTCATCTGACTGATCGATGTAAACAAtg
gattgttttttttctgatcaATGTAGACAATGAATTGGTTTGTTTTTGTG
AATGACTCATAACACTGTTTGAGTAGAGAACATTTCTCCAATAAGCTATG
AACTGGTAAAAGGGTTCTGGAATCTTCACGAATCCTTTTCGAATTTAATG
ATATCATATACGCTTACCCCTATACGCGGGAattataatttcattttaag
AATCAATTTTGAATGTCTAGAgagaatcttttttattttaataaacaTCA
AGGTGCACGGACTTTTGAGACGCATCGGTAGTGTGTGAATACCATTGTTC
AGTCAGGGTTTCTAACATTATgctaaaatatattttgtatcTTCGATATa
aatttactttgaaaaatgaatttgagtACGAGCCAGATTGATTTTCACAC
TGGACAGTGTATTTTTAAGTCGGACGCAAAGACTTCAAATTTGTATAGTA
AACTCTTGAAAGAGGAgggttttttattttattttaatattttgtacATA
TTCCTGGGACTTTCCGTCTTAACTTTCCGTTGCATGAAACTTAAGGAAAT
TTCATGATCTAGAAGAGCTCATTGTAGGTCGAatatggaagaaaatttct
cacCCTCGTTGAGTCACAACTACAGATATCGCCTTGACCACCTACTGACC
TCAAATTATGgattagtttttcttttttccgaCACTGTTGAATGGAATCT
CCTTTTTTCGACTTACTGATTACTCTCATCTTATTGTTAGCTCctcaaag
aagaaaagaaggaaaaaaattagggaaatttgcccaaaaaaagcTATCCC
GGTTACATTACATAGAGGTGGTTTTCTCTATTGTTGTTCTTACATCACCC
CTTAAAGAATGTAATAATTGAATAAAATGTGAATGAAGGGAAAATTTTAc
tttcctttttgaaaaaaatgtcaaagtttttcaatcttcctcttttttca
tgattttgtttGTATGTACATTTTTGTTGGGATTGCTCATTTGAAAGAAG
GAATATTTTCTGGGCTGTCGCTCTATGAGAGTGGGAAGTCACTTATTGAA
TGTTCTTCCCTTTCCAGAAAGATGAGAATGTGGAACGAAATTAGATCtta
aataataattataatgaTTTGTAAATTTCTCTGGGAATATTGATCATTAA
AGAcgtgaaaattttgattttggataaGTGAGCATATGTTTTTAGTTCGG
TAATGAATCATATTGTTGAAAGGAAAGACTTTAGGAGTTTGCTTCAAGTC
CTTTTAGCAAATTAACGTGAg Run BLAST on NCBI transcript from alignment at scaffold_245:43280..47516+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054749 ID=TCONS_00054749|Name=TCONS_00054749|organism=Clytia hemisphaerica|type=transcript|length=4237bp|location=Sequence derived from alignment at scaffold_245:43280..47516+ (Clytia hemisphaerica)
CATCATCATCTTTGCTATAGAGAATGTACAATTTGATACGCCCTTTTTAA
GGCACAAAATAATAGCTGATAATCTTTATTTCATTATAGGTGAATGATAT
CGTGTTTCATCCACAAATTGGAACACTGGCTACTGTCGGCTCAGATGGAA
AGTACAGTTTCTGGGATAAAGATGCTAGAACCAAACTCAAAGTATGTGTT
ACTTAAAACTGCCGTATGTGTTTTTGAAAGCGTCCTTTCGATGTTATTTA
GGCGTTTTTAAGGTTTATTTTATCATAACCTGATCCTTTCAGTATCNGGA
GTGCCAAATGGATTTGCATTGGGATCAGTAGAAGGAAGAGTTGCCATGCA
ATACATAAATCCTACCGATCCGTAAGATTGTTTATTAATTCATGTGATGC
AGGTTTCATTTAACCGGTATCAAACCACGCTCTAACTATCACTATCCCTT
TAAGTGTGcacttatttttcttttgtttacccCTCTGTACCcctttcaat
gaaaatttaaattttattattgtatcATTAGAATAAAAAGACGAATATTA
AAAAAGATGAATGATTGATTTTTCTATAGCACCaaaattttttacttcat
tttcaatttttttaaattattttccttaAGAGAAATCCAGTGAAACAGGT
TGAAATGTTGTAATCCAAGATGTAAGTCCAAGATTCGTGAAAATCCCCGA
AAGTTCTTCCTCTCAAACGGTTGAgtgaaaacacaaaaatttttgGGGTC
CCCAAAAAGTCTTTTTCCtttctaagggtcgattttcgctTTTTGGCTCG
GAATTACCCGTCACTTACACTTCGCAAATCTGGTACCCCCtagaatcaaa
acaaagattagttcACACCTAAAACGAACAAGTAAGGGAGCTCGGTAAAA
GGATTGGTATTGTTCTAAAGTGATAAATCACCATATTACGTTGAGGTTTG
AGTTGCTTGGATCAACCTAAATCAACTCGCTGTTTGATATGATTTCACCA
AAGTTATCCTTGAATTTCAATTTGCCATACATTCTTTTCAATAGATTTGG
GTAACTAAATAATGTAAGGGTGACAATTTAATATTACAACTGTTCctgat
ctttttcttttttttttacagtaAAGACAATTTCACTTTTAAATGCCATC
GATCAGATATAACGTCCGGACAAGTTCAAGATATCTATGCTGTAAGTATT
TATTGCCCCCACTAAAACAAGGCTGCGTGGGTTTTGTTATTTATTAGGGA
CTCTACGTGAATCTTGAAGGTGATTTTAGTTATTGGTGAAATTTATTCAA
CCTCACAAAGTCATTTACAGGGTAAAGAAACTGGACagatttttatataa
agtaaaattctcATGCTTTGTGCGAAATTTTATGACTCGTATACTTAATA
TTCAATCTCAAAAACGTATTCAATCATTTggaattttaatatttattggT
TGTAATGAGAATTCTGATGTTATTTCAATTATTCCAAGCCCTGGTTTAGA
TGACgagttttaaggattttacttttttctgcTTTTCTTTTGAGACACAC
TGTTTATGTGTCATCATCATCTTTGCTATAGAGAATGTACAATTTGATAC
GCCCTTTTTAAGGCACAATATAATAGCTGataatctttattttattatag
GTGAATGATATCGTGTTTCATCCACAAATTGGAACACTGGCTACTGTCGG
CTCAGATGGAAAGTACAGTTTCTGGGATAAAGATGCTAGAACCAAACTCA
AAGTATGTGTTACTTAAAACTGCCGTATGTGTTTTTGAAAGCGTCCTTTC
GATGTTATTTAGGCGTTTTTAAGGTTTATTTTATCATAACCTGATCCTTT
CAGTATCCAAAACATAGCTTGGAATCTGAGCTCAAAGAAGACTCTCTCTC
AGGACGCGTCCCTTGTGGCCTAAGGGTTAAAGCGTCCATTTCGATGTTAT
TGAGGCGTTTTTTAAGGTTTATTTTAATTGGAAGAAACACTCGAATAGCA
GAAGAACATCTTCCAATTTTAATGTTTActttcataatggcggattctCT
GCTAAGTAAGAAAATCCTTGCAGAACCTTTAAAAACCTCTATTGTAGAAT
GTAGGGTAGAATTTCAACACCTAAATTGAATTAAATCTGATTCATTTGAG
TTGAAAAAGTTCTCCTTTTTTGTAGACTTCCGAAAACTGTGGACAATCGA
TCACAGCTTGTTGTTTTAACGCTGAGggaaatatttttgcatattccACT
GGCTATGATTGGACTAAGGTATCTCATCTCCTTTTAAAACAATTGATAAA
CCTTGGATAAACCAGTAATTGAATACTTCGTAATTGAATTATCTACTCGA
TTTATCGCTTTGCAATCCATCACTTTTCTTCCATCCATTTGATAGCTCTT
CAAAAAGTTCTCCGTAAAGTGACTCACTTTCCAAAAGTGATACACTATAA
TGGTTTTAGTAAAAGATAAATGTCCAACTCAGAAAATGTTAGAAAAATCC
CagcatctttttctttttcctgatAGTAACCTAAGGATCTTTTTCTTTCA
CCTCTCAGTGTTCCCACTTTTTCTTATCGCTCAAAGAGATCCCTGTATAT
GATCGGCGTCGATAAATGATTCACTACGTCACCAATCCGATATTATTCCA
GGATTTTTTAAACGGGTTACCATCGGAATTTACCAAGCCCTTTCACTGTA
CTTTAAGTAAATTTCAACTTATTTACAACTTCTAACTTTTACTGTTTTAG
GGTCATGAATTTTACAATCCGAACCAAAAGCCAGCGATTTATTTGAGAAG
TTGTGCCGATGAGATGaaaccaaaaaccaaaaaatgaaaattaagaaaCA
AGAATGGGATGGGTTTAATAAAACTTTCTAGAGCATATTCATTCCATGTG
ATCCAtcagttttattttgaagtcgCTTGCTTTTTGGACTCATCTGACTG
ATCGATGTAAACAAtggattgttttttttctgatcaATGTAGACAATGAA
TTGGTTTGTTTTTGTGAATGACTCATAACACTGTTTGAGTAGAGAACATT
TCTCCAATAAGCTATGAACTGGTAAAAGGGTTCTGGAATCTTCACGAATC
CTTTTCGAATTTAATGATATCATATACGCTTACCCCTATACGCGGGAatt
ataatttcattttaagAATCAATTTTGAATGTCTAGAgagaatctttttt
attttaataaacaTCAAGGTGCACGGACTTTTGAGACGCATCGGTAGTGT
GTGAATACCATTGTTCAGTCAGGGTTTCTAACATTATgctaaaatatatt
ttgtatcTTCGATATaaatttactttgaaaaatgaatttgagtACGAGCC
AGATTGATTTTCACACTGGACAGTGTATTTTTAAGTCGGACGCAAAGACT
TCAAATTTGTATAGTAAACTCTTGAAAGAGGAgggttttttattttattt
taatattttgtacATATTCCTGGGACTTTCCGTCTTAACTTTCCGTTGCA
TGAAACTTAAGGAAATTTCATGATCTAGAAGAGCTCATTGTAGGTCGAat
atggaagaaaatttctcacCCTCGTTGAGTCACAACTACAGATATCGCCT
TGACCACCTACTGACCTCAAATTATGgattagtttttcttttttccgaCA
CTGTTGAATGGAATCTCCTTTTTTCGACTTACTGATTACTCTCATCTTAT
TGTTAGCTCctcaaagaagaaaagaaggaaaaaaattagggaaatttgcc
caaaaaaagcTATCCCGGTTACATTACATAGAGGTGGTTTTCTCTATTGT
TGTTCTTACATCACCCCTTAAAGAATGTAATAATTGAATAAAATGTGAAT
GAAGGGAAAATTTTActttcctttttgaaaaaaatgtcaaagtttttcaa
tcttcctcttttttcatgattttgtttGTATGTACATTTTTGTTGGGATT
GCTCATTTGAAAGAAGGAATATTTTCTGGGCTGTCGCTCTATGAGAGTGG
GAAGTCACTTATTGAATGTTCTTCCCTTTCCAGAAAGATGAGAATGTGGA
ACGAAATTAGATCttaaataataattataatgaTTTGTAAATTTCTCTGG
GAATATTGATCATTAAAGAcgtgaaaattttgattttggataaGTGAGCA
TATGTTTTTAGTTCGGTAATGAATCATATTGTTGAAAGGAAAGACTTTAG
GAGTTTGCTTCAAGTCCTTTTAGCAAATTAACGTGAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054749-exon-scaffold_245-1491911889:43280..43470 | TCONS_00054749-exon-scaffold_245-1491911889:43280..43470 | Clytia hemisphaerica | exon |
| TCONS_00054749-exon-scaffold_245-1510915933:43280..43470 | TCONS_00054749-exon-scaffold_245-1510915933:43280..43470 | Clytia hemisphaerica | exon |
| TCONS_00054749-exon-scaffold_245-1575043694:43280..43470 | TCONS_00054749-exon-scaffold_245-1575043694:43280..43470 | Clytia hemisphaerica | exon |
| TCONS_00054749-exon-scaffold_245-1491911889:45455..45547 | TCONS_00054749-exon-scaffold_245-1491911889:45455..45547 | Clytia hemisphaerica | exon |
| TCONS_00054749-exon-scaffold_245-1510915933:45455..45547 | TCONS_00054749-exon-scaffold_245-1510915933:45455..45547 | Clytia hemisphaerica | exon |
| TCONS_00054749-exon-scaffold_245-1575043694:45455..45547 | TCONS_00054749-exon-scaffold_245-1575043694:45455..45547 | Clytia hemisphaerica | exon |
| TCONS_00054749-exon-scaffold_245-1491911889:46030..47516 | TCONS_00054749-exon-scaffold_245-1491911889:46030..47516 | Clytia hemisphaerica | exon |
| TCONS_00054749-exon-scaffold_245-1510915933:46030..47516 | TCONS_00054749-exon-scaffold_245-1510915933:46030..47516 | Clytia hemisphaerica | exon |
| TCONS_00054749-exon-scaffold_245-1575043694:46030..47516 | TCONS_00054749-exon-scaffold_245-1575043694:46030..47516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:43280..47516 + |
Blast
BLAST of TCONS_00054749 vs. Swiss-Prot (Human)
Match: RAE1L (mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.031e-34 Identity = 61/87 (70.11%), Postives = 72/87 (82.76%), Query Frame = 3
Query: 90 VNDIVFHPQIGTLATVGSDGKYSFWDKDARTKLKTSENCGQSITACCFNAEGNIFAYSTGYDWTKGHEFYNPNQKPAIYLRSCADEM 350
VN I FHP GTLATVGSDG++SFWDKDARTKLKTSE Q I+ACCFN GNIFAY++ YDW+KGHEFYNP +K I+LR+ A+E+
Sbjct: 276 VNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEEL 362
The following BLAST results are available for this feature:
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