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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054755 ID=TCONS_00054755|Name=TCONS_00054755|organism=Clytia hemisphaerica|type=transcript|length=839bp
AGAGCACTCAAAGCGGCTGGTTCAATATGCCAACATTCACGATCTGGTTC
AAAACCTGCTTTCTGCCAAACATCCAACAGTTTCCCGGCCGAAAGATCAT
CATCGGCGACAACCTAGGTTGTCATTTTAGTGAAGAAGTGATCACCATGT
GTAGAAACAACAACATTGATTTCGTGCCACTTATTGCCAATTCAACGCAT
TTAACTCAACCACTAGACGTGTCTGTCTTTCGCCTGTTAAAGGTTACGTG
GAGCAATACCCTAAAGAGATGGAGAAGAGACACGCAAAATTCTTACGCTT
TATCTCTAGGATTTCGTACGTGCGTTATTGTGCCAGTGAATGCCAATCAA
ATTCTCCGTAAATTACCGGGAGCAAACAGAGACGGTGGAGTTCTTGTACA
TATGGATCAATCGATCCTACAGTATCTAAAGCAACAATTCCCTGAAAATC
CCCCAAAAGtaaCTTTGAAAAGAGGCAAAAAGTCATCCCAGGCGCCGATT
TCGCCAAACTGTCATCGTTGGCTGGAACAAGTCCTGCAACAACAACGTCT
CCGTCAACAACGTCTCCGTCAACAACGTCTTCGTCGACAACGTCTTCGTC
GACAACGTCTTCGTCGACAACGTCTTCCTCAAAATGCAGCACCCGTGGca
aagagaagaagaagaaggagccTAAAGTGAGCCAACAACACTCCCCAAAG
AGTAGAGCCCCAAAGCGATTTCAATCAGACGAACCCTCAACATCGGGATA
TGCGTTACGTAATCGtgctgaaaaatcgaaaaaaacggACGAGGAAGTTG
AAACTTACTGCGGACACTGCTTCGGAGAATACATTGCTG Run BLAST on NCBI protein sequence of TCONS_00054755-protein >TCONS_00054755-protein ID=TCONS_00054755-protein|Name=TCONS_00054755-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
STQSGWFNMPTFTIWFKTCFLPNIQQFPGRKIIIGDNLGCHFSEEVITMC
RNNNIDFVPLIANSTHLTQPLDVSVFRLLKVTWSNTLKRWRRDTQNSYAL
SLGFRTCVIVPVNANQILRKLPGANRDGGVLVHMDQSILQYLKQQFPENP
PKVTLKRGKKSSQAPISPNCHRWLEQVLQQQRLRQQRLRQQRLRRQRLRR
QRLRRQRLPQNAAPVAKRRRRRSLK Run BLAST on NCBI transcript from alignment at scaffold_245:116259..119332+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054755 ID=TCONS_00054755|Name=TCONS_00054755|organism=Clytia hemisphaerica|type=transcript|length=3074bp|location=Sequence derived from alignment at scaffold_245:116259..119332+ (Clytia hemisphaerica)
AGAGCACTCAAAGCGGCTGGTTCAATATGCCAACATTCACGATCTGGTTC
AAAACCTGCTTTCTGCCAAACATCCAACAGTTTCCCGGCCGAAAGATCAT
CATCGGCGACAACCTAGGTTGTCATTTTAGTGAAGAAGTGATCACCATGT
GTAGAAACAACAACATTGATTTCGTGCCACTTATTGCCAATTCAACGCAT
TTAACTCAACCACTAGACGTGTCTGTCTTTCGCCTGTTAAAGGTTACGTG
GAGCAATACCCTAAAGAGATGGAGAAGAGACACGCAAAATTCTTACGCTT
TATCTCTAGGATTTCGTACGTGCGTTATTGTGCCAGTGAATGCCAATCAA
ATTCTCCGTAAATTACCGGGAGCAAACAGAGACGGTGGAGTTCTTGTACA
TATGGATCAATCGATCCTACAGTATCTAAAGCAACAATTCCCTGAAAATC
CCCCAAAAGGTTAGTACAAGTGTCAGCTAGGTATTTCCTTATTGTCCTAA
AAGCAGTAAGCGTCACAGGCAAGCATGGGGAAAATTTTGTTATACTTTGC
GAGTACCGACAATCTTCTGTCATGAAATGCGAAATAcaacaaattgcttt
tttttttcttttagtaaCTTTGAAAAGAGGCAAAAAGTCATCCCAGGCGC
CGATTTCGCCAAACTGTCATCGTTGGCTGGAACAAGTCCTGCAACAACAT
CTTCATCAACAACGTCTTCGTCAACAACATCTTCGTCAACAACGTCTTCG
TCAACAACGTCTTCGTCAACAACGTCTTCGTCGACAACGTCTTCGTCAAA
ACGCAGCACCCGTGGcaaagagaagaagaagaaggagccTAAAGTGAACG
AACAACACTCCCCAAACAGTAGAGCCCCAAAGCGATTTCAAGCAGACGAA
CCCTCAACATCGGGATATGCATTACGTAATCGtgctgaaaaatcgaaaaa
aacggACTATGATTATGAAGTTGAAACTTACTGCGGACACTGCTTCGGAG
AATacagtgctggaaaatacaagtaaacattttgaaatagcTTTCACCTA
AACAaacttgacaaattttttgGTAATTAAACTTCTTGCGTTTTCAAATA
CACCTTAATGGGTCAGATAAAGTGTAATTGCAATTAGGTTTTCCCGTTTT
ATAAAGTCACGGTATATGTTATTCAAAATCTTGTGACCCCGCTCCCACCC
AATTCACAACGTCTTGTGCCCTTGCATATGTCTCCTTCATAAAAATAGCA
TTAAATACTTTTTACTACCAACCCGAAAACCAATCAAAGAATTCAGCGGT
AACAGGGTCTAAATCACTTCACCTTTTCGCTTTATTAGTTGGATAGCCTG
TGACAATTGTGATGAGTGGTATCACCTTCAATGCTCCGGATACCCATACG
AAGACGAAGATTACTGGCAAATTGAATTGGATGGTGTTGAATTTGTTTGC
CACTTATGTAACTAGCGAGTTCTTAAAGTTGTTAATATTTTACAAACGTA
TTCTAGATTTCACTCTTacgtacacccctgtctcagtctAACTACCgaag
aaattgggtatttttGTTAACAGGGGACCATTTTTGGCCCAATATTTTCC
GTCAGGAAGAAGTCACCGTAAGGTTATTGACacccggggggtactaccct
tgccgagcgacgggggtgctccactgaagttcgaaaaatagaccctacgt
gggactgattttttgaaaaatgttgcctAAATTTGTGAataagtgaccct
gaatgggactgaaatacCAAAACTTTCTCAAAACTTGCTACtttttaccc
aaattttccaaaaaaggcacaCCCTACGGGGAactgtttttgcgacccta
cctgggactcgtgaaggtaaaaaaaggtaccctaaccAGCGGCAGCatcc
cgtaacccattttgccctagtccccccccccccgggtattgACATTATTT
TCTGTagagataatattttgaaaactgtATATAGCTTTTTATGCATTTCG
ATCCATGATTCTTGCTGTTGAAACGTGTTATacgataaaaaatataaaaa
atgcgCTATAATGGGATTTTCTCATTTTCGGGACGATTCAATTGCATGAA
TTTTCACCATTCTGTTTCGTTGAATGAATCATACTTTGTGTGATGTGGGT
GTGGTATTATGCCCTTCAGTCAAATATCAGCAGATATGTAAACagattgt
tttgtttatgtttggTAACCTATAGTTAATTAACCAGGTATCATTGATCA
ATCACATATCCACCATTGTCCACGCTGGttatattctcaacttcagttga
gttagaatctgagaatgtgtgtgtgtgtgtctgtctgtctgtgtgtctgt
gtgtatgtcccaaaactttggggcagcctggagacttcaaaaattgttcg
atttggctgaaatttggcacacttgttccttggNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNATCAACAACGTCTCCGTCAACAACGTCT
CCGTCAACAACGTCTTCGTCGACAACGTCTTCGTCGACAACGTCTTCGTC
GACAACGTCTTCCTCAAAATGCAGCACCCGTGGcaaagagaagaagaaga
aggagccTAAAGTGAGCCAACAACACTCCCCAAAGAGTAGAGCCCCAAAG
CGATTTCAATCAGACGAACCCTCAACATCGGGATATGCGTTACGTAATCG
tgctgaaaaatcgaaaaaaacggACGAGGAAGTTGAAACTTACTGCGGAC
ACTGCTTCGGAGAATACATTGCTG Coding sequence (CDS) from alignment at scaffold_245:116259..119332+ >TCONS_00054755 ID=TCONS_00054755|Name=TCONS_00054755|organism=Clytia hemisphaerica|type=CDS|length=2034bp|location=Sequence derived from alignment at scaffold_245:116259..119332+ (Clytia hemisphaerica)
AGCACTCAAAGCGGCTGGTTCAATATGCCAACATTCACGATCTGGTTCAA
AACCTGCTTTCTGCCAAACATCCAACAGTTTCCCGGCCGAAAGATCATCA
TCGGCGACAACCTAGGTTGTCATTTTAGTGAAGAAGTGATCACCATGTGT
AGAAACAACAACATTGATTTCGTGCCACTTATTGCCAATTCAACGCATTT
AACTCAACCACTAGACGTGTCTGTCTTTCGCCTGTTAAAGGTTACGTGGA
GCAATACCCTAAAGAGATGGAGAAGAGACACGCAAAATTCTTACGCTTTA
TCTCTAGGATTTCGTACGTGCGTTATTGTGCCAGTGAATGCCAATCAAAT
TCTCCGTAAATTACCGGGAGCAAACAGAGACGGTGGAGTTCTTGTACATA
TGGATCAATCGATCCTACAGTATCTAAAGCAACAATTCCCTGAAAATCCC
CCAAAAGtaaCTTTGAAAAGAGGCAAAAAGTCATCCCAGGCGCCGATTTC
GCCAAACTGTCATCGTTGGCTGGAACAAGTCCTGCAACAACAACGTCTCC
GTCAACAACGTCTCCGTCAACAACGTCTTCGTCGACAACGTCTTCGTCGA
CAACGTCTTCGTCGACAACGTCTTCCTCAAAATGCAGCACCCGTGGcaaa
gagaagaagaagaaggagccTAAAGTGAAGCACTCAAAGCGGCTGGTTCA
ATATGCCAACATTCACGATCTGGTTCAAAACCTGCTTTCTGCCAAACATC
CAACAGTTTCCCGGCCGAAAGATCATCATCGGCGACAACCTAGGTTGTCA
TTTTAGTGAAGAAGTGATCACCATGTGTAGAAACAACAACATTGATTTCG
TGCCACTTATTGCCAATTCAACGCATTTAACTCAACCACTAGACGTGTCT
GTCTTTCGCCTGTTAAAGGTTACGTGGAGCAATACCCTAAAGAGATGGAG
AAGAGACACGCAAAATTCTTACGCTTTATCTCTAGGATTTCGTACGTGCG
TTATTGTGCCAGTGAATGCCAATCAAATTCTCCGTAAATTACCGGGAGCA
AACAGAGACGGTGGAGTTCTTGTACATATGGATCAATCGATCCTACAGTA
TCTAAAGCAACAATTCCCTGAAAATCCCCCAAAAGtaaCTTTGAAAAGAG
GCAAAAAGTCATCCCAGGCGCCGATTTCGCCAAACTGTCATCGTTGGCTG
GAACAAGTCCTGCAACAACAACGTCTCCGTCAACAACGTCTCCGTCAACA
ACGTCTTCGTCGACAACGTCTTCGTCGACAACGTCTTCGTCGACAACGTC
TTCCTCAAAATGCAGCACCCGTGGcaaagagaagaagaagaaggagccTA
AAGTGAAGCACTCAAAGCGGCTGGTTCAATATGCCAACATTCACGATCTG
GTTCAAAACCTGCTTTCTGCCAAACATCCAACAGTTTCCCGGCCGAAAGA
TCATCATCGGCGACAACCTAGGTTGTCATTTTAGTGAAGAAGTGATCACC
ATGTGTAGAAACAACAACATTGATTTCGTGCCACTTATTGCCAATTCAAC
GCATTTAACTCAACCACTAGACGTGTCTGTCTTTCGCCTGTTAAAGGTTA
CGTGGAGCAATACCCTAAAGAGATGGAGAAGAGACACGCAAAATTCTTAC
GCTTTATCTCTAGGATTTCGTACGTGCGTTATTGTGCCAGTGAATGCCAA
TCAAATTCTCCGTAAATTACCGGGAGCAAACAGAGACGGTGGAGTTCTTG
TACATATGGATCAATCGATCCTACAGTATCTAAAGCAACAATTCCCTGAA
AATCCCCCAAAAGtaaCTTTGAAAAGAGGCAAAAAGTCATCCCAGGCGCC
GATTTCGCCAAACTGTCATCGTTGGCTGGAACAAGTCCTGCAACAACAAC
GTCTCCGTCAACAACGTCTCCGTCAACAACGTCTTCGTCGACAACGTCTT
CGTCGACAACGTCTTCGTCGACAACGTCTTCCTCAAAATGCAGCACCCGT
GGcaaagagaagaagaagaaggagccTAAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054755-exon-scaffold_245-1491911889:116259..116717 | TCONS_00054755-exon-scaffold_245-1491911889:116259..116717 | Clytia hemisphaerica | exon |
| TCONS_00054755-exon-scaffold_245-1510915933:116259..116717 | TCONS_00054755-exon-scaffold_245-1510915933:116259..116717 | Clytia hemisphaerica | exon |
| TCONS_00054755-exon-scaffold_245-1575043694:116259..116717 | TCONS_00054755-exon-scaffold_245-1575043694:116259..116717 | Clytia hemisphaerica | exon |
| TCONS_00054755-exon-scaffold_245-1491911889:116873..116956 | TCONS_00054755-exon-scaffold_245-1491911889:116873..116956 | Clytia hemisphaerica | exon |
| TCONS_00054755-exon-scaffold_245-1510915933:116873..116956 | TCONS_00054755-exon-scaffold_245-1510915933:116873..116956 | Clytia hemisphaerica | exon |
| TCONS_00054755-exon-scaffold_245-1575043694:116873..116956 | TCONS_00054755-exon-scaffold_245-1575043694:116873..116956 | Clytia hemisphaerica | exon |
| TCONS_00054755-exon-scaffold_245-1491911889:119037..119332 | TCONS_00054755-exon-scaffold_245-1491911889:119037..119332 | Clytia hemisphaerica | exon |
| TCONS_00054755-exon-scaffold_245-1510915933:119037..119332 | TCONS_00054755-exon-scaffold_245-1510915933:119037..119332 | Clytia hemisphaerica | exon |
| TCONS_00054755-exon-scaffold_245-1575043694:119037..119332 | TCONS_00054755-exon-scaffold_245-1575043694:119037..119332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:116259..119332 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004875 | DDE_SF_endonuclease_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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