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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054858 ID=TCONS_00054858|Name=TCONS_00054858|organism=Clytia hemisphaerica|type=transcript|length=1429bp
aaaaaggacattttttgttcaaaaaacgccattaaaaaagagagacctgt
tttaaggcctgaaatagcacacatcTGCGGGAATAAATAGAACAACTTAA
ATTtgacaggaatttaatttggcggatgacggaaaaaattaaattttaca
aattcgtcaaattttttttccgcgaaaatttcttcctttaatgtagaCAA
AGTATTTACTATAGGAagaggcaaaaaaaaaaaggacaGTTATGAAAATG
CAACCATTTCAAATGCTATACAACAAAGAAATCTAGGCAATCGTGATCAA
TTAGCATGGTGCTACATATTACATTGTTTCAAAGAGGTTCCCACAAAGTA
TGAAGAAAGAGTGCACATTCTAAACGAAAAAACTAAAGTTATGTCTATGA
ACTTAAAGGCATCTTTTGCAAAAACAATATCTGACAAGAATATCTTGATT
TCTTATATACTTTTAAAGTGTTTATCTATGTTTCACATAATATCAATCAA
GAAAATTAAGTATAGAAAAGTGATTATATACTATATAGCTCAATATAACC
ATAAAGATTGTGTAAAGTTATATTTTACCAAATAAAAGGGAAAAGCTTTG
CTGTACGTTGCTTGTAGCTTTGATATTCAGCTAAAGCTCCCCACTTTTTA
TCAgcatatctttccaacaaaggAATGCCACTAACTTTTGTTAAAAGGAA
GGTAACAAAAAAAGGTGACAAAGCACTATAAAACTCATTGCCTTCCATCA
CATTTGATGCAGGTAAGAAAAGACCAGACCAGATCAAAATTTCACCTAAA
TAATTAGGATGACGAGAGATGCTCCAGAGACCTGTGTTGACAAACTTATC
CTTGTTGGCAGGATCACTTCTGAATTTGGACTTTTGATAATCAGCAGTTG
CTTCAACAAGAAAACCAGTTGCAAAAATCGCAAATCCAAGATAATCACGG
TAATTGAGCTCTTTATCTTCTTGCTTGAAATTCAAGATCATTGTTGGAAG
AAGTGTGATCCAAACCCAAAGCCCTTGCATGGTCCAGAACAAAAGGAAAT
GAGAAAAACTATTCTTAGCCTTTCTGAATCTTCTATCTTCTCCACTTTCC
ATGACTCTTGAAAAGAGGTAGGTTCCAAGTCGTGCAGCCCACAATGTGAC
ACAAGAATTTTGAATGATTTGACGATTGAAAAAGGGAAGATGTCCTTTTC
TCCCCCAATTTAAGGTCAACCATGTCAATCCAAGAAATGTAGATGAACCG
ACCAAATCATAAAacttttcagttttcaatgCATAAGCAAAACCAAAAGC
AATCCATTGTATGCCTAAATCGTAAGCTGCTGCCTTTAATAGTGGATTTC
TATTTAAAAGATTACTAGCCATTGATATCTTATTTCCCATCTGAAGCACA
AAAAAACAGAATTAAATTGTTGCaactta Run BLAST on NCBI protein sequence of TCONS_00054858-protein >TCONS_00054858-protein ID=TCONS_00054858-protein|Name=TCONS_00054858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MGNKISMASNLLNRNPLLKAAAYDLGIQWIAFGFAYALKTEKFYDLVGSS
TFLGLTWLTLNWGRKGHLPFFNRQIIQNSCVTLWAARLGTYLFSRVMESG
EDRRFRKAKNSFSHFLLFWTMQGLWVWITLLPTMILNFKQEDKELNYRDY
LGFAIFATGFLVEATADYQKSKFRSDPANKDKFVNTGLWSISRHPNYLGE
ILIWSGLFLPASNVMEGNEFYSALSPFFVTFLLTKVSGIPLLERYADKKW
GALAEYQSYKQRTAKLFPFIW Run BLAST on NCBI transcript from alignment at scaffold_245:124866..126294 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054858 ID=TCONS_00054858|Name=TCONS_00054858|organism=Clytia hemisphaerica|type=transcript|length=1429bp|location=Sequence derived from alignment at scaffold_245:124866..126294 (Clytia hemisphaerica)
taagttGCAACAATTTAATTCTGTTTTTTTGTGCTTCAGATGGGAAATAA
GATATCAATGGCTAGTAATCTTTTAAATAGAAATCCACTATTAAAGGCAG
CAGCTTACGATTTAGGCATACAATGGATTGCTTTTGGTTTTGCTTATGca
ttgaaaactgaaaagtTTTATGATTTGGTCGGTTCATCTACATTTCTTGG
ATTGACATGGTTGACCTTAAATTGGGGGAGAAAAGGACATCTTCCCTTTT
TCAATCGTCAAATCATTCAAAATTCTTGTGTCACATTGTGGGCTGCACGA
CTTGGAACCTACCTCTTTTCAAGAGTCATGGAAAGTGGAGAAGATAGAAG
ATTCAGAAAGGCTAAGAATAGTTTTTCTCATTTCCTTTTGTTCTGGACCA
TGCAAGGGCTTTGGGTTTGGATCACACTTCTTCCAACAATGATCTTGAAT
TTCAAGCAAGAAGATAAAGAGCTCAATTACCGTGATTATCTTGGATTTGC
GATTTTTGCAACTGGTTTTCTTGTTGAAGCAACTGCTGATTATCAAAAGT
CCAAATTCAGAAGTGATCCTGCCAACAAGGATAAGTTTGTCAACACAGGT
CTCTGGAGCATCTCTCGTCATCCTAATTATTTAGGTGAAATTTTGATCTG
GTCTGGTCTTTTCTTACCTGCATCAAATGTGATGGAAGGCAATGAGTTTT
ATAGTGCTTTGTCACCTTTTTTTGTTACCTTCCTTTTAACAAAAGTTAGT
GGCATTcctttgttggaaagatatgcTGATAAAAAGTGGGGAGCTTTAGC
TGAATATCAAAGCTACAAGCAACGTACAGCAAAGCTTTTCCCTTTTATTT
GGTAAAATATAACTTTACACAATCTTTATGGTTATATTGAGCTATATAGT
ATATAATCACTTTTCTATACTTAATTTTCTTGATTGATATTATGTGAAAC
ATAGATAAACACTTTAAAAGTATATAAGAAATCAAGATATTCTTGTCAGA
TATTGTTTTTGCAAAAGATGCCTTTAAGTTCATAGACATAACTTTAGTTT
TTTCGTTTAGAATGTGCACTCTTTCTTCATACTTTGTGGGAACCTCTTTG
AAACAATGTAATATGTAGCACCATGCTAATTGATCACGATTGCCTAGATT
TCTTTGTTGTATAGCATTTGAAATGGTTGCATTTTCATAACtgtcctttt
tttttttgcctctTCCTATAGTAAATACTTTGtctacattaaaggaagaa
attttcgcggaaaaaaaatttgacgaatttgtaaaatttaattttttccg
tcatccgccaaattaaattcctgtcaAATTTAAGTTGTTCTATTTATTCC
CGCAgatgtgtgctatttcaggccttaaaacaggtctctcttttttaatg
gcgttttttgaacaaaaaatgtccttttt Coding sequence (CDS) from alignment at scaffold_245:124866..126294 >TCONS_00054858 ID=TCONS_00054858|Name=TCONS_00054858|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_245:124866..126294 (Clytia hemisphaerica)
ATGGGAAATAAGATATCAATGGCTAGTAATCTTTTAAATAGAAATCCACT
ATTAAAGGCAGCAGCTTACGATTTAGGCATACAATGGATTGCTTTTGGTT
TTGCTTATGcattgaaaactgaaaagtTTTATGATTTGGTCGGTTCATCT
ACATTTCTTGGATTGACATGGTTGACCTTAAATTGGGGGAGAAAAGGACA
TCTTCCCTTTTTCAATCGTCAAATCATTCAAAATTCTTGTGTCACATTGT
GGGCTGCACGACTTGGAACCTACCTCTTTTCAAGAGTCATGGAAAGTGGA
GAAGATAGAAGATTCAGAAAGGCTAAGAATAGTTTTTCTCATTTCCTTTT
GTTCTGGACCATGCAAGGGCTTTGGGTTTGGATCACACTTCTTCCAACAA
TGATCTTGAATTTCAAGCAAGAAGATAAAGAGCTCAATTACCGTGATTAT
CTTGGATTTGCGATTTTTGCAACTGGTTTTCTTGTTGAAGCAACTGCTGA
TTATCAAAAGTCCAAATTCAGAAGTGATCCTGCCAACAAGGATAAGTTTG
TCAACACAGGTCTCTGGAGCATCTCTCGTCATCCTAATTATTTAGGTGAA
ATTTTGATCTGGTCTGGTCTTTTCTTACCTGCATCAAATGTGATGGAAGG
CAATGAGTTTTATAGTGCTTTGTCACCTTTTTTTGTTACCTTCCTTTTAA
CAAAAGTTAGTGGCATTcctttgttggaaagatatgcTGATAAAAAGTGG
GGAGCTTTAGCTGAATATCAAAGCTACAAGCAACGTACAGCAAAGCTTTT
CCCTTTTATTTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054858-exon-scaffold_245-1491911889:124866..126294 | TCONS_00054858-exon-scaffold_245-1491911889:124866..126294 | Clytia hemisphaerica | exon |
| TCONS_00054858-exon-scaffold_245-1510915933:124866..126294 | TCONS_00054858-exon-scaffold_245-1510915933:124866..126294 | Clytia hemisphaerica | exon |
| TCONS_00054858-exon-scaffold_245-1575043694:124866..126294 | TCONS_00054858-exon-scaffold_245-1575043694:124866..126294 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:124866..126294 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006629 | lipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006629 |
lipid metabolic process |
| cellular_component |
GO:0005737 |
cytoplasm |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
Blast
The following BLAST results are available for this feature:
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