TCONS_00058003 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058003
Unique NameTCONS_00058003
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058003 ID=TCONS_00058003|Name=TCONS_00058003|organism=Clytia hemisphaerica|type=transcript|length=395bp
TCATCTATGTATcacgaagaaaatgaagattgcCCCAGAGTCACGGCTTT
ATTGAAAAAGTTCAAACAAATCAGCTCGTCATGCGAATCACGANTATTTT
GGGATCATTTTGATGGATGTATTTTGGGGACGTAAGAATAAGAAAGATTG
TCCTTACAAACAGAAAAAGGGTGTAATGTTAAATAAGACTCACACAAAGA
AATGCGAGGAAGGGATAGATCAAGATTACATTCATTGGAGGGTTGAACAA
GTCTGTGAGAAGATGAACAGTTGTACGATTCCAGCATCTACCGCTTTCTT
TGATATTACCGACCCGTGTCCAGATGTCTACAAGTATATGGAATTAACTT
ACACATGCAGCAGATATGACATATCAACTTGGACTAGCAATCGTG
Run BLAST on NCBI

transcript from alignment at scaffold_302:364880..365274

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058003 ID=TCONS_00058003|Name=TCONS_00058003|organism=Clytia hemisphaerica|type=transcript|length=395bp|location=Sequence derived from alignment at scaffold_302:364880..365274 (Clytia hemisphaerica)
CACGATTGCTAGTCCAAGTTGATATGTCATATCTGCTGCATGTGTAAGTT
AATTCCATATACTTGTAGACATCTGGACACGGGTCGGTAATATCAAAGAA
AGCGGTAGATGCTGGAATCGTACAACTGTTCATCTTCTCACAGACTTGTT
CAACCCTCCAATGAATGTAATCTTGATCTATCCCTTCCTCGCATTTCTTT
GTGTGAGTCTTATTTAACATTACACCCTTTTTCTGTTTGTAAGGACAATC
TTTCTTATTCTTACGTCCCCAAAATACATCCATCAAAATGATCCCAAAAT
ANTCGTGATTCGCATGACGAGCTGATTTGTTTGAACTTTTTCAATAAAGC
CGTGACTCTGGGgcaatcttcattttcttcgtgATACATAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036559XLOC_036559Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058003-exon-scaffold_302-1491911889:364880..365274TCONS_00058003-exon-scaffold_302-1491911889:364880..365274Clytia hemisphaericaexon
TCONS_00058003-exon-scaffold_302-1510915933:364880..365274TCONS_00058003-exon-scaffold_302-1510915933:364880..365274Clytia hemisphaericaexon
TCONS_00058003-exon-scaffold_302-1575043694:364880..365274TCONS_00058003-exon-scaffold_302-1575043694:364880..365274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:364880..365274 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.953703	0.558006	1.07983	0.633868	0.514449	0.203262	4.41409	3.90284	2.57173	0.796377	1.15947	2.03251	4.05938	3.557	2.92434	9.41479	1.86145	4.84319	0	0.212175	2.21303	1.3493	2.18699	2.18712	1.02395	3.28986	0.523086	0	0.423414	0.215696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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