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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054763 ID=TCONS_00054763|Name=TCONS_00054763|organism=Clytia hemisphaerica|type=transcript|length=4049bpRun BLAST on NCBI protein sequence of TCONS_00054763-protein >TCONS_00054763-protein ID=TCONS_00054763-protein|Name=TCONS_00054763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=864bp VRSDKESLKMGKKKGGKESEVPLKEEFDPVELVTKKPQTVTLMLQSAEESRun BLAST on NCBI transcript from alignment at scaffold_245:199044..231755+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054763 ID=TCONS_00054763|Name=TCONS_00054763|organism=Clytia hemisphaerica|type=transcript|length=32712bp|location=Sequence derived from alignment at scaffold_245:199044..231755+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_245:199044..231755+ >TCONS_00054763 ID=TCONS_00054763|Name=TCONS_00054763|organism=Clytia hemisphaerica|type=CDS|length=64875bp|location=Sequence derived from alignment at scaffold_245:199044..231755+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054763 vs. Swiss-Prot (Human)
Match: ARMC3 (Armadillo repeat-containing protein 3 OS=Homo sapiens GN=ARMC3 PE=2 SV=2) HSP 1 Score: 558.525 bits (1438), Expect = 1.965e-179 Identity = 342/868 (39.40%), Postives = 529/868 (60.94%), Query Frame = 1
Query: 64 PLKEEFDPVELVTKKPQTVTLMLQSAEESVLQTVCDSLYKYAEKSQENKAQMVNLGVLEHLPRLISHEDKLVKRSAIMCIGSMSSENSCKKILRRIGCVKPLLQLLSPDEEIICHEFSTLALSNLAETFTSKIEIFEQNGLQLLVNHLSSTDCDVQKNTVHAVSLLVEEFQNRAAMKDLHGFEPLLKLLDSDYPVIQELALSTLITCSQDAENRGALRELEAMNKLVDIIGNETWSDLHILALQCLANLLEDTETLRAIQTTGVFDKLLAFITGSSSSPEIQQFTMIVIAAASRLEENRRIFNEQETEKTLITLLTSDNIQVSISAVKAIAALSENLSSRDKIGRLDGIPNIMKLLSHENEEAREIATLALSNLTNANQNNCNILMDKNSLDVIVKLLSDKKYEIQSNTAVLLSNLAMNESWRNEIKKHGVVKALMEPLKSESEQVQLDACQALAAFLCDVDARNKLLTLDEGILNVVNLLRSPNGSVQRNAAWVLAMCAVDENIAEEITKYGGLELLQQIQHSSTRKNPVVDMAWSRLLNNNLPAKYALTGELGFDNTLESLFFDVGKIRGDSQFLPLPLLFNEEVNNKRPVILVNPKKNATSGSNSKRANKDEEKHTASPSKPASVEKPEKQRTRTRNDRRMSKSRVGRDNREEPIISGGTNTVSEKPLVE-----------------TIPSLPALSKFVTSISATE------DKELLNMVQTVQSTIGGLSDLSEQITSLALFVSDRMGGNVERSDFTNFSFELHISELKTELASNVIPIGRIKCGIYYHRALLFKVLADQIALRCSLMRGEYGRAWNEVQIMERSETG--QPILPPKVFVVDLMHNPGELFPKGSPEAVKYQRI 2592
P K+ FDP+ + +KK TV LML S EE +L C+++YK+A K +ENK ++ LG +E L +L++HEDK+V+R+A M G ++S N KK+LR + + ++ L+P+EE++ HEF++L L+N++ +TSK++IFE GL+ L+ LSS D DV+KN++ + LV++FQ RA +++L+ P+L LL S+YPVIQ LAL TL + D E+R LR+ + ++ L+ I+ + +DLHI AL +AN LED +T+ IQ TG KLL+F +S+ P+IQ+ I A+ ENR++F+EQE EK L+ LL S+N I+A +AI+A+ EN S+D GIP +++LL +NEE RE A LAL+NLT N N N + + +D ++ LLS K+ +N A +L+N+AM E R I+ H ++ A++ PL+S + VQ A A+ A CDV+AR +L G+ +V LLRS N V+++A+W + +CA DE A E+ + G L++L+++ S TRKN + A+++LLNNNL KY+ TG L N + F+D G+I ++ LPL L +E ++ R V+L+N K + S+ + +K + + S S +S+ + K++ + + + +++ EP + G NTV K + + + KFV S+ + D + V V +I ++++ EQI LA +V+++MGG + + +FS+ELHISELK +L SNVIPIG +K GI+YHRALLFK LAD+I + CSL+RGEYGRAWNEV + S G + P+++V+DLM +PG L S EA Y+ I
Sbjct: 12 PPKDVFDPLMIESKKAATVVLMLNSPEEEILAKACEAIYKFALKGEENKTTLLELGAVEPLTKLLTHEDKIVRRNATMIFGILASNNDVKKLLRELDVMNSVIAQLAPEEEVVIHEFASLCLANMSAEYTSKVQIFEHGGLEPLIRLLSSPDPDVKKNSMECIYNLVQDFQCRAKLQELNAIPPILDLLKSEYPVIQLLALKTLGVIANDKESRTMLRDNQGLDHLIKILETKELNDLHIEALAVIANCLEDMDTMVQIQQTGGLKKLLSFAE-NSTIPDIQKNAAKAITKAAYDPENRKLFHEQEVEKCLVALLGSENDGTKIAASQAISAMCENSGSKDFFNN-QGIPQLIQLLKSDNEEVREAAALALANLTTCNPANANAAAEADGIDPLINLLSSKRDGAIANAATVLTNMAMQEPLRLNIQNHDIMHAIISPLRSANTVVQSKAALAVTATACDVEARTELRN-SGGLEPLVELLRSKNDEVRKHASWAVMVCAGDELTANELCRLGALDILEEVNVSGTRKNKFSEAAYNKLLNNNLSLKYSQTGYLSSSNIINDGFYDYGRINPGTKLLPLKELCLQEPSDLRAVLLINSKSYVSPPSSME--DKSDVGYGRSISSSSSLRRSSKEKNKKNSYHFSAGFGSPIEDKSEP--ASGRNTVLSKSATKEKGWRKSKGKKEEEKVKEEEEVMVVPKFVGEGSSDKEWCPPSDPDFSMYVYEVTKSILPITNIKEQIEDLAKYVAEKMGGKIPKEKLPDFSWELHISELKFQLKSNVIPIGHVKKGIFYHRALLFKALADRIGIGCSLVRGEYGRAWNEVMLQNDSRKGVIGGLPAPEMYVIDLMFHPGGLMKLRSREADLYRFI 872 The following BLAST results are available for this feature:
BLAST of TCONS_00054763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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