TCONS_00054863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054863
Unique NameTCONS_00054863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054863 ID=TCONS_00054863|Name=TCONS_00054863|organism=Clytia hemisphaerica|type=transcript|length=233bp
TTCCTTCATGTCAGTTTTCAGCTTTTAAGTATATCGGGAACATACAGTTT
AAACTCTGCAATTCGTTTTTTTACCATATATGGTCATACCTTTAATTCTA
AATATCTTGAGTTAATCAAAAGCTGAAATttaaagtgaccccatttttaa
GCACTACTCGTCAAGATCTATCGTTTGGAAATGTTGCTTTAAGCATAATA
CCAACTTcaaattttcgtttaaattttgaTGNN
Run BLAST on NCBI

transcript from alignment at scaffold_245:312810..313042

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054863 ID=TCONS_00054863|Name=TCONS_00054863|organism=Clytia hemisphaerica|type=transcript|length=233bp|location=Sequence derived from alignment at scaffold_245:312810..313042 (Clytia hemisphaerica)
NNCAtcaaaatttaaacgaaaatttgAAGTTGGTATTATGCTTAAAGCAA
CATTTCCAAACGATAGATCTTGACGAGTAGTGCttaaaaatggggtcact
ttaaATTTCAGCTTTTGATTAACTCAAGATATTTAGAATTAAAGGTATGA
CCATATATGGTAAAAAAACGAATTGCAGAGTTTAAACTGTATGTTCCCGA
TATACTTAAAAGCTGAAAACTGACATGAAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034562XLOC_034562Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054863-exon-scaffold_245-1491911889:312810..313042TCONS_00054863-exon-scaffold_245-1491911889:312810..313042Clytia hemisphaericaexon
TCONS_00054863-exon-scaffold_245-1510915933:312810..313042TCONS_00054863-exon-scaffold_245-1510915933:312810..313042Clytia hemisphaericaexon
TCONS_00054863-exon-scaffold_245-1575043694:312810..313042TCONS_00054863-exon-scaffold_245-1575043694:312810..313042Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:312810..313042 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.52629	0	0	0	0	0	0	0	0	0	2.88206	4.71953	6.6095	6.89396	2.14444	0	0	3.45416	0	0.896524	3.18935	7.20736	2.16163	4.82302	0	0	3.73127	0.113589
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top