TCONS_00058365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058365
Unique NameTCONS_00058365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1210

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058365 ID=TCONS_00058365|Name=TCONS_00058365|organism=Clytia hemisphaerica|type=transcript|length=1210bp
GATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAG
AAATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTCAACAAG
ATGATGATTTGGAGAGTGGATTTGATGATACAGCAGATCAACATAAGAGA
AGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGTTGAAATGGA
CATTCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTG
GATTTGATGATACAGCAGATCAACATAAAAGAAGTTTTCAAAGGAAGACA
GCTCCTGAATATGACAGAAATGATGAAATGGACATTCTCCATAAAAAGGC
TCCGGTCACTGAAAAAGATGATGATTTGGAGAGTGGATTTGATGATACAG
CAgcTTCTATTGCACGCCCTATTAGGAAAGCCAAGATGAGAAATTCCAAA
GAGTCGACTGACTCGGTCACAACCAGGGAACCAGGAATTCGAAAACGTGG
CAAAGAAAATACGAAGGCGAAAAAAACATCAGCCTCAAacAACAATTCAA
TGAAACGCAAaagaaaagaggaaaagaaagagACTATTATGTGTACGGGA
TGTGGAGAAAAGTACGACGAAAAAACTGATGATAATAGGTGGGTGCAATG
TGATGCATGCGAACAGTGGTGTCATCTCCAGTGTTCCGGCATAAAATATC
GGACGTCAAAATATGACACTATTAATCTTGAAAATATACCGTTTAAGTGT
AGAACGTCGTGTTTAAAGTAAAGATTGAACAATAAAAAGTGTCTGTATTT
TTACTCAACGTAACTACAGTAATCGTATTTTTATATGGTCGAGCTCTCTT
TTGCGAATTGGGATAAATGTTTTACGAAGACAATAACAATGGAAATAGGT
CTTGAATTCCCAAGtcaattgaatgaaaacaaaaacaaaatttgtcaAAG
TCTTTCTTGAAGGGAAATCCGGACTTTTTTGCACGTCCTATGTAATAGGC
TAATCGCAATAAACAATTTAACCCCCATGTTGAGGAAGTCACTTTTGGAA
AATATTCATCCATAGTCCTTATAAAAACCCTGGTCCGgaagcttattttt
caaatattttgttagctttttcctttgttgccatcaaaagataaaaatca
atttgctcAATTTTGGATCACGTTACCGagtactcctcttgggattggtt
tgagcaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_31:110..3520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058365 ID=TCONS_00058365|Name=TCONS_00058365|organism=Clytia hemisphaerica|type=transcript|length=3411bp|location=Sequence derived from alignment at scaffold_31:110..3520+ (Clytia hemisphaerica)
GATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAG
AAATGATGAAATGGACATTCTCCATAATAAGGCTGCGGTCACTCAACAAG
ATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTGagaaaatcttt
acaaatagaaattATCGTTATTTTTCTACGGTTCtctttttctattgtta
tttttcGAAGTTTATtgattatattatttttatctACTTAGATCAACATA
AAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAA
ATGGACATTCTCCATAAAAAGGCTCCGGTCACTGAAAAAGATGATGATTT
GGAGAGTGGATTTGATGATACAGCAGGTGagaaaatctttacaaatagaa
attATCGTTATTTTTCTACGGTTCTCTTTTTccattgttatttttcattc
acTTTGAAGTTTATtgattatattatttttatctACTTAGATCAACATAA
AAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAA
TGGACATTCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAG
AGTGGATTTGATGATACAGCAGGTgagaaaatcttttacaaataGAAATT
ATCGTTATTTTTCTACGGTTCTCTTTTTccattgttatttttcattcacT
TTGAAGTTTATTGATTATATTATTCTTATCTACTTAGATCAACATAAGAG
AAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGTTGAAATGG
ACATTCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGT
GGATTTGATGATACAGCAGGTgagaaaatcttttacaaataGAAATTATC
GTTATTTTTCTACGGTTCTCTTTTTccattgttatttttcattcacTTTG
AAGTTTATtgattatattatttttatctACTTAGATCAACATAAAAGAAG
TTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGACA
TTCTCCATAAAAAGGCTCCGGTCACTGAAAAAGATGATGATTTGGAGAGT
GGATTTGATGATACAGCAggtgagaaaaatttgaaaacaacaatTCTCCC
GAGTAACAAACGTGTTGACTATAAATGGATAAACTTGAATTTcttgggtc
atttattaaatttggttcattggatcaaaagttatcctaatttgaaaaaa
aagttacttCAGGAAAGTactcaaaaacgttgaaaatcgacctatcaaat
ttttattctgaaattttcagtagcgACAGCTTTTGCACGAATAAGAGCAT
TACGTAGTAATTtagaaacataatttttttcaaacttgagcctagaaagg
gtttaaaatcttcatcaaaatcatttccaTTTGTAAAAGGATTAAACTTT
TTAGATCTCTTTTTAGAATATTCACctgaaagagagaaacttttttgtgg
cgcaccagGTATATAATATCACTATATTGAAAAcgatttcattttctttc
agcTTCTATTGCACGCCCTATTAGGAAAGCCAAGATGAGAAATTCCAAAG
AGTCGACTGACTCGGTCACAACCAGTAAGCTTTTTTTTCATCCTATCAGA
TTCATGTCCCGTTTCAAgctatttttcttttcgcatctTGAACTTTCAAA
ATGTTGTCAATTATGAATACTAACTATCAGAATTTTCCTTTGAATGTAAC
AAAATGAATCCTTATTATTGTTattcttgtttttattattattgtatTCA
AAGATTCTATTGTATTACTTATCTTCGTTAGCCGAATTGAGAAACCAGCC
CATAGCAAACCCAAACCTCTGATAAGTTTTACATCTCTTTCAGGGGAACC
AGGAATTCGAAAACGTGGCAAAGAAAATACGAAGGCGAAAAAAACATCAG
CCTCAAGTATGGTTATTTTCCCGTTATAAATGTCCAGGGCCTAAAGTTAC
TCTTGAAATTGCCTTTTTGATTAACATAATTTTATATCTTAAACTACAGG
TacatgaaattttattttcaaaactttttagatATAATCCCTATTTCTTT
TCCAATTGAGTTTGCCTCTCATTTTGTATGCCATTTTGAGTGGTACAATA
TCGAATCTTTTGTATATATGACAGTCAAATCTAGTATGGGAGTATTCCTC
TGGCTCTGGGTCATTTATTATCACAATTGtaattctcttttattttagac
AACAATTCAATGAAACGCAAaagaaaagaggaaaagaaagagACTATTAT
GTGTACGGGATGTGGAGAAAAGTACGACGAAAAAACTGATGATAATAGGT
ATGAAGAGTCGTTATGTTCGATTTTTTAGATCAAAAGCACTTCCTTTTTA
AAGATTATACAAGGAAGACCTTTCTTGGAATTAAAGCATACCGTTTTCTT
GTGAAAATTTAGAAAGAAGATATTATAGAGAATGACTGGTAGCAGTAGTT
TAACCTACTTTAAACACCATCAGTTTTTGCTTCTCAATCTCAATTACTct
aataatttaattttgaattttgcaaaaaattttcaCCCAATACATTTTTA
TTCCGAAcccctgcttgttaatttttggaaaattttatttgaaagttatT
TTCCTTGCCCTAGTTATTCTGTATTAACCTGCTTTTCTAAAATTCTCTCT
GTAATACCTACTCCTGCGAAAGGAGAGGGGATCCAGAGGCTTCATATATA
ATATCTATATCTAGTATCCACTGGTATTCGAAGATATTTCGAATGTCTGT
TTTTCATGTTTGTTCGATGTCTTATCATATTTATTATAGGTGGGTGCAAT
GTGATGCATGCGAACAGTGGTGTCATCTCCAGTGTTCCGGCATAAAATAT
CGGACGTCAAAATATGACACTATTAATCTTGAAAATATACCGTTTAAGTG
TAGAACGTCGTGTTTAAAGTAAAGATTGAACAATAAAAAGTGTCTGTATT
TTTACTCAACGTAACTACAGTAATCGTATTTTTATATGGTCGAGCTCTCT
TTTGCGAATTGGGATAAATGTTTTACGAAGACAATAACAATGGAAATAGG
TCTTGAATTCCCAAGtcaattgaatgaaaacaaaaacaaaatttgtcaAA
GTCTTTCTTGAAGGGAAATCCGGACTTTTTTGCACGTCCTATGTAATAGG
CTAATCGCAATAAACAATTTAACCCCCATGTTGAGGAAGTCACTTTTGGA
AAATATTCATCCATAGTCCTTATAAAAACCCTGGTCCGgaagcttatttt
tcaaatattttgttagctttttcctttgttgccatcaaaagataaaaatc
aatttgctcAATTTTGGATCACGTTACCGagtactcctcttgggattggt
ttgagcaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036772XLOC_036772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058365-exon-scaffold_31-1491911889:110..175TCONS_00058365-exon-scaffold_31-1491911889:110..175Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1510915933:110..175TCONS_00058365-exon-scaffold_31-1510915933:110..175Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1575043694:110..175TCONS_00058365-exon-scaffold_31-1575043694:110..175Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1491911889:416..430TCONS_00058365-exon-scaffold_31-1491911889:416..430Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1510915933:416..430TCONS_00058365-exon-scaffold_31-1510915933:416..430Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1575043694:416..430TCONS_00058365-exon-scaffold_31-1575043694:416..430Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1491911889:677..731TCONS_00058365-exon-scaffold_31-1491911889:677..731Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1510915933:677..731TCONS_00058365-exon-scaffold_31-1510915933:677..731Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1575043694:677..731TCONS_00058365-exon-scaffold_31-1575043694:677..731Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1491911889:847..978TCONS_00058365-exon-scaffold_31-1491911889:847..978Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1510915933:847..978TCONS_00058365-exon-scaffold_31-1510915933:847..978Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1575043694:847..978TCONS_00058365-exon-scaffold_31-1575043694:847..978Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1491911889:1094..1228TCONS_00058365-exon-scaffold_31-1491911889:1094..1228Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1510915933:1094..1228TCONS_00058365-exon-scaffold_31-1510915933:1094..1228Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1575043694:1094..1228TCONS_00058365-exon-scaffold_31-1575043694:1094..1228Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1491911889:1662..1733TCONS_00058365-exon-scaffold_31-1491911889:1662..1733Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1510915933:1662..1733TCONS_00058365-exon-scaffold_31-1510915933:1662..1733Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1575043694:1662..1733TCONS_00058365-exon-scaffold_31-1575043694:1662..1733Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1491911889:2003..2065TCONS_00058365-exon-scaffold_31-1491911889:2003..2065Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1510915933:2003..2065TCONS_00058365-exon-scaffold_31-1510915933:2003..2065Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1575043694:2003..2065TCONS_00058365-exon-scaffold_31-1575043694:2003..2065Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1491911889:2358..2457TCONS_00058365-exon-scaffold_31-1491911889:2358..2457Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1510915933:2358..2457TCONS_00058365-exon-scaffold_31-1510915933:2358..2457Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1575043694:2358..2457TCONS_00058365-exon-scaffold_31-1575043694:2358..2457Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1491911889:2949..3520TCONS_00058365-exon-scaffold_31-1491911889:2949..3520Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1510915933:2949..3520TCONS_00058365-exon-scaffold_31-1510915933:2949..3520Clytia hemisphaericaexon
TCONS_00058365-exon-scaffold_31-1575043694:2949..3520TCONS_00058365-exon-scaffold_31-1575043694:2949..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:110..3520 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.008832	0	0	0	0.424029	0.242627	0.217906	1.70086	3.25762	0	0	1.64448	0.780808	1.10037e-08	0.638191	1.22224	3.52357	1.79298	2.33187	0	0	0	1.24866	0.184909	0	0	0.361702	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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