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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054837 ID=TCONS_00054837|Name=TCONS_00054837|organism=Clytia hemisphaerica|type=transcript|length=1911bp
CTAGCACTGCTTAGTACCTATTGGTTTTCAATAATTAATCTAGCGtaaca
tattttttcaaagttatttCACACTTTCCATCTATTTTTCTCTTATTGCA
GACGagtgaaataaatgaaaatgagtATCAACAACCTTGTATCAAGCATT
CTGGCAATCACTGTTATTGTCCATCAGATCAAAGCTGATCCAATCTACCT
TGAACCACCACCGACAGCTGCTGGTGGAAAACCAATCGCTGTTATTTGGA
TTCATGGTATGCGATGCTCACCTGAAGCGTATCGAACAATCGCTCAAGAA
TTTCAGAAAGCAGCTGCTACTCAAGGCTTCAAAGCCTGGGTTGGTCTTCC
TGAATTCTTCCTTGATGTACCAGAGCCTATATTGATGACCCGTTATGTCC
AATACACCTTGAAAATGCTGAAAACCAAGCACAACTTTCCAGGAGATCAG
ATTTATTTGGCTGCTCATTCTTTGGGAGGTGTCATGACACAAATCTATGC
CAAAGGAaaatcgaactttgtcaaagGTCAAATATTGATGGGAGCAGTTC
TGTTGAGAAACACAAGAAGAATCACAGGTTCaggacgaacaatattcgat
tATGATGTTCCAACCCTTACACTCAACGGAGAACTTGATGGACTTTTGAG
AGTTAGTAGAAGTGCAGAAGGTTACTGGcatgcaaagaaaaacattgtta
aaagtCAATCAGGAATGTTCCCTGTTGTTGCAATGAGAGGTATGAGTCAT
TCAAGTTTCATGGATTTCTCAATGATACCAAACTCTGTAACTTCAACTGA
TCTTCATCCAGAAGTCCCTGAGATAGTTGGTCATGTCATTACTGGCAATG
TCATGGCAAGCTTCATCTCAAAACTGGAAGGTTCCGATAATCCTTGGTCA
AATATCCAAGACATTCTTGATTACACAGATGACTTTATGAAGCCGTTTTC
TGAAGCCATGGAAATTGAAGGAAGCTATAACTTGAAACCACCTTGCTACA
ACAAAACACTGGTTAACGACAAACGTGAAACTTGTATGAGAGGATCAAAG
TGGGTTCCTTATGCTCAACGAATAATGGGTGGCAACTTGACTGCTTACAA
TGCTGATATTATAACTCAGGACAACTTTCACCGTGTATACACAATCAACC
CTGTCCATTTACCTCAAATAAACAACACATGTAAATCCGCTTCAACAAAT
GGAAAATGTATTCTTGACAGCGTCACCGTTACCGAGAACTATTATCACCG
TTTGAACTCTTTGGATACTGGCAAATATGAAGTTGGTGCAGTTGAAATGA
AAGCCAAACTCATGTCACGCCAATCTGTACAAAAAGCAGCAGGAAATAAA
CAAGCTGATTTTCATCAAACTGACGAAGTTGGTAATCGTTGTGGTGAAAT
CAATAGACAAGCATTGAAGTGGGCTCTCTCGAAAACAAATCCTGATGCAC
TTCGCAGATATCAGAAATACGGCAAGAAATTAGTCATTGGAAACGACCTT
GGTCCATACAATGCTGGTCCACTGTGGATCTGGCATTATTTGAAGTACAA
AGATAATGCCGACAAAACACAGACCGTTCTTCAAGCACCGATGATGAGAA
CACCGACCGACTATTTCATTAAATCAGCCGCGGGATTCCATTATTGTAAG
CTGTTGTCACCTTTCAGAGCCTTGGAATGGATCCACGTTGATTCTCAATT
CGACCATAATGGTATTCGACCAAAGGAATTGATGAGAAGTGGAAAGAGAG
TCTTCCAGAACTGAAATAAGATCAAATCTTTATCATCATTTTATGTTAAA
ATGTATCTCTATGAATAATGGGAGCAATTTATTTTAATAGTAGTTTTATC
AACCAAGAAAATATCTTATGCGCCGAAAATATAACGTGTCTTTTTATTAA
CCCAATGAAAT Run BLAST on NCBI protein sequence of TCONS_00054837-protein >TCONS_00054837-protein ID=TCONS_00054837-protein|Name=TCONS_00054837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=549bp
MKMSINNLVSSILAITVIVHQIKADPIYLEPPPTAAGGKPIAVIWIHGMR
CSPEAYRTIAQEFQKAAATQGFKAWVGLPEFFLDVPEPILMTRYVQYTLK
MLKTKHNFPGDQIYLAAHSLGGVMTQIYAKGKSNFVKGQILMGAVLLRNT
RRITGSGRTIFDYDVPTLTLNGELDGLLRVSRSAEGYWHAKKNIVKSQSG
MFPVVAMRGMSHSSFMDFSMIPNSVTSTDLHPEVPEIVGHVITGNVMASF
ISKLEGSDNPWSNIQDILDYTDDFMKPFSEAMEIEGSYNLKPPCYNKTLV
NDKRETCMRGSKWVPYAQRIMGGNLTAYNADIITQDNFHRVYTINPVHLP
QINNTCKSASTNGKCILDSVTVTENYYHRLNSLDTGKYEVGAVEMKAKLM
SRQSVQKAAGNKQADFHQTDEVGNRCGEINRQALKWALSKTNPDALRRYQ
KYGKKLVIGNDLGPYNAGPLWIWHYLKYKDNADKTQTVLQAPMMRTPTDY
FIKSAAGFHYCKLLSPFRALEWIHVDSQFDHNGIRPKELMRSGKRVFQN Run BLAST on NCBI transcript from alignment at scaffold_245:741840..744042- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054837 ID=TCONS_00054837|Name=TCONS_00054837|organism=Clytia hemisphaerica|type=transcript|length=2203bp|location=Sequence derived from alignment at scaffold_245:741840..744042- (Clytia hemisphaerica)
CTAGCACTGCTTAGTACCTATTGGTTTTCAATAATTAATCTAGCGTAACA
TATTTTTTCAAAGTTATTTCACACTTTCCATCTATTTTTCTCTTATTGCA
GACGAGTGAAATAAATGAAAATGAGTATCAACAACCTTGTATCAAGCATT
CTGGCAATCACTGTTATTGTCCATCAGATCAAAGCTGATCCAATCTACCT
TGAACCACCACCGACAGCTGCTGGTGGAAAACCAATCGCTGTTATTTGGA
TTCATGGTATGCGATGCTCACCTGAAGCGTATCGAACAATCGCTCAAGAA
TTTCAGAAAGCAGCTGCTACTCAAGGCTTCAAAGCCTGGGTTGGTCTTCC
TGAATTCTTCCTTGATGTACCAGAGCCTATATTGATGACCCGTTATGTCC
AATACACCTTGAAAATGCTGAAAACCAAGCACAACTTTCCAGGAGATCAG
ATTTATTTGGCTGCTCATTCTTTGGGAGGTGTCATGACACAAATCTATGC
CAAAGGAAAATCGAACTTTGTCAAAGGTCAAATATTGATGGGAGCAGTTC
TGTTGAGAAACACAAGAAGAATCACAGGTTCAGGACAAACAAAATTCGAT
TATGATGTTCCAACTCTTACTNAAAGCCTGGGTTGGTCTTCCTGAATTCT
TCCTTGATGTACCAGAGCCTATATTGATGACCCGTTATGTCCAATACACC
TTGAAAATGCTGAAGACCAAGCACAACTTTCCAGGAGATCAGATTTATTT
GGCTGCTCATTCTTTGGGAGGTGTCATGACACAAATATATGCCAAAGGAA
AATCGAACTTTGTCAAAGGTCAAATATTGATGGGAGCACATTTGTTGAGA
AACACAAGAAGAATCACAGGTTCAGGACGAACAATATTCGATTATGATGT
TCCAACCCTTACACTCAACGGAGAACTTGATGGACTTTTGAGAGTTAGTA
GAAGTGCAGAAGGTTACTGGCATGCAAAGAAAAACATTGTTAAAAGTCAA
TCAGGAATGTTCCCTGTTGTTGCAATGAGAGGTATGAGTCATTCAAGTTT
CATGGATTTCTCAATGATACCAAACTCTGTAACTTCAACTGATCTTCATC
CAGAAGTCCCTGAGATAGTTGGTCATGTCATTACTGGCAATGTCATGGCA
AGCTTCATCTCAAAACTGGAAGGTTCCGATAATCCTTGGTCAAATATCCA
AGACATTCTTGATTACACAGATGACTTTATGAAGCCGTTTTCTGAAGCCA
TGGAAATTGAAGGAAGCTATAACTTGAAACCACCTTGCTACAACAAAACA
CTGGTTAACGACAAACGTGAAACTTGTATGAGAGGATCAAAGTGGGTTCC
TTATGCTCAACGAATAATGGGTGGCAACTTGACTGCTTACAATGCTGATA
TTATAACTCAGGACAACTTTCACCGTGTATACACAATCAACCCTGTCCAT
TTACCTCAAATAAACAACACATGTAAATCCGCTTCAACAAATGGAAAATG
TATTCTTGACAGCGTCACCGTTACCGAGAACTATTATCACCGTTTGAACT
CTTTGGATACTGGCAAATATGAAGTTGGTGCAGTTGAAATGAAAGCCAAA
CTCATGTCACGCCAATCTGTACAAAAAGCAGCAGGAAATAAACAAGCTGA
TTTTCATCAAACTGACGAAGTTGGTAATCGTTGTGGTGAAATCAATAGAC
AAGCATTGAAGTGGGCTCTCTCGAAAACAAATCCTGATGCACTTCGCAGA
TATCAGAAATACGGCAAGAAATTAGTCATTGGAAACGACCTTGGTCCATA
CAATGCTGGTCCACTGTGGATCTGGCATTATTTGAAGTACAAAGATAATG
CCGACAAAACACAGACCGTTCTTCAAGCACCGATGATGAGAACACCGACC
GACTATTTCATTAAATCAGCCGCGGGATTCCATTATTGTAAGCTGTTGTC
ACCTTTCAGAGCCTTGGAATGGATCCACGTTGATTCTCAATTCGACCATA
ATGGTATTCGACCAAAGGAATTGATGAGAAGTGGAAAGAGAGTCTTCCAG
AACTGAAATAAGATCAAATCTTTATCATCATTTTATGTTAAAATGTATCT
CTATGAATAATGGGAGCAATTTATTTTAATAGTAGTTTTATCAACCAAGA
AAATATCTTATGCGCCGAAAATATAACGTGTCTTTTTATTAACCCAATGA
AAT Coding sequence (CDS) from alignment at scaffold_245:741840..744042- >TCONS_00054837 ID=TCONS_00054837|Name=TCONS_00054837|organism=Clytia hemisphaerica|type=CDS|length=3300bp|location=Sequence derived from alignment at scaffold_245:741840..744042- (Clytia hemisphaerica)
GTTCAGGACGAACAATATTCGATTATGATGTTCCAACCCTTACACTCAAC
GGAGAACTTGATGGACTTTTGAGAGTTAGTAGAAGTGCAGAAGGTTACTG
GCATGCAAAGAAAAACATTGTTAAAAGTCAATCAGGAATGTTCCCTGTTG
TTGCAATGAGAGGTATGAGTCATTCAAGTTTCATGGATTTCTCAATGATA
CCAAACTCTGTAACTTCAACTGATCTTCATCCAGAAGTCCCTGAGATAGT
TGGTCATGTCATTACTGGCAATGTCATGGCAAGCTTCATCTCAAAACTGG
AAGGTTCCGATAATCCTTGGTCAAATATCCAAGACATTCTTGATTACACA
GATGACTTTATGAAGCCGTTTTCTGAAGCCATGGAAATTGAAGGAAGCTA
TAACTTGAAACCACCTTGCTACAACAAAACACTGGTTAACGACAAACGTG
AAACTTGTATGAGAGGATCAAAGTGGGTTCCTTATGCTCAACGAATAATG
GGTGGCAACTTGACTGCTTACAATGCTGATATTATAACTCAGGACAACTT
TCACCGTGTATACACAATCAACCCTGTCCATTTACCTCAAATAAACAACA
CATGTAAATCCGCTTCAACAAATGGAAAATGTATTCTTGACAGCGTCACC
GTTACCGAGAACTATTATCACCGTTTGAACTCTTTGGATACTGGCAAATA
TGAAGTTGGTGCAGTTGAAATGAAAGCCAAACTCATGTCACGCCAATCTG
TACAAAAAGCAGCAGGAAATAAACAAGCTGATTTTCATCAAACTGACGAA
GTTGGTAATCGTTGTGGTGAAATCAATAGACAAGCATTGAAGTGGGCTCT
CTCGAAAACAAATCCTGATGCACTTCGCAGATATCAGAAATACGGCAAGA
AATTAGTCATTGGAAACGACCTTGGTCCATACAATGCTGGTCCACTGTGG
ATCTGGCATTATTTGAAGTACAAAGATAATGCCGACAAAACACAGACCGT
TCTTCAAGCACCGATGATGAGAACACCGACCGACTATTTCATTAAATCAG
CCGCGGGATTCCATTATTGTAAGCTGTTGTCACCTTTCAGAGCCTTGGAA
TGGATCCACGTTGATTCTCAATTCGACCATAATGGTATTCGACCAAAGGA
ATTGATGAGAAGTGGAAAGAGAGTCTTCCAGAACTGAATGAAAATGAGTA
TCAACAACCTTGTATCAAGCATTCTGGCAATCACTGTTATTGTCCATCAG
ATCAAAGCTGATCCAATCTACCTTGAACCACCACCGACAGCTGCTGGTGG
AAAACCAATCGCTGTTATTTGGATTCATGGTATGCGATGCTCACCTGAAG
CGTATCGAACAATCGCTCAAGAATTTCAGAAAGCAGCTGCTACTCAAGGC
TTCAAAGCCTGGGTTGGTCTTCCTGAATTCTTCCTTGATGTACCAGAGCC
TATATTGATGACCCGTTATGTCCAATACACCTTGAAAATGCTGAAAACCA
AGCACAACTTTCCAGGAGATCAGATTTATTTGGCTGCTCATTCTTTGGGA
GGTGTCATGACACAAATCTATGCCAAAGGAAAATCGAACTTTGTCAAAGG
TCAAATATTGATGGGAGCAGTTCTGTTGAGAAACACAAGAAGAATCACAG
GTTCAGGACGAACAATATTCGATTATGATGTTCCAACCCTTACACTCAAC
GGAGAACTTGATGGACTTTTGAGAGTTAGTAGAAGTGCAGAAGGTTACTG
GCATGCAAAGAAAAACATTGTTAAAAGTCAATCAGGAATGTTCCCTGTTG
TTGCAATGAGAGGTATGAGTCATTCAAGTTTCATGGATTTCTCAATGATA
CCAAACTCTGTAACTTCAACTGATCTTCATCCAGAAGTCCCTGAGATAGT
TGGTCATGTCATTACTGGCAATGTCATGGCAAGCTTCATCTCAAAACTGG
AAGGTTCCGATAATCCTTGGTCAAATATCCAAGACATTCTTGATTACACA
GATGACTTTATGAAGCCGTTTTCTGAAGCCATGGAAATTGAAGGAAGCTA
TAACTTGAAACCACCTTGCTACAACAAAACACTGGTTAACGACAAACGTG
AAACTTGTATGAGAGGATCAAAGTGGGTTCCTTATGCTCAACGAATAATG
GGTGGCAACTTGACTGCTTACAATGCTGATATTATAACTCAGGACAACTT
TCACCGTGTATACACAATCAACCCTGTCCATTTACCTCAAATAAACAACA
CATGTAAATCCGCTTCAACAAATGGAAAATGTATTCTTGACAGCGTCACC
GTTACCGAGAACTATTATCACCGTTTGAACTCTTTGGATACTGGCAAATA
TGAAGTTGGTGCAGTTGAAATGAAAGCCAAACTCATGTCACGCCAATCTG
TACAAAAAGCAGCAGGAAATAAACAAGCTGATTTTCATCAAACTGACGAA
GTTGGTAATCGTTGTGGTGAAATCAATAGACAAGCATTGAAGTGGGCTCT
CTCGAAAACAAATCCTGATGCACTTCGCAGATATCAGAAATACGGCAAGA
AATTAGTCATTGGAAACGACCTTGGTCCATACAATGCTGGTCCACTGTGG
ATCTGGCATTATTTGAAGTACAAAGATAATGCCGACAAAACACAGACCGT
TCTTCAAGCACCGATGATGAGAACACCGACCGACTATTTCATTAAATCAG
CCGCGGGATTCCATTATTGTAAGCTGTTGTCACCTTTCAGAGCCTTGGAA
TGGATCCACGTTGATTCTCAATTCGACCATAATGGTATTCGACCAAAGGA
ATTGATGAGAAGTGGAAAGAGAGTCTTCCAGAACTGAATGAAAATGAGTA
TCAACAACCTTGTATCAAGCATTCTGGCAATCACTGTTATTGTCCATCAG
ATCAAAGCTGATCCAATCTACCTTGAACCACCACCGACAGCTGCTGGTGG
AAAACCAATCGCTGTTATTTGGATTCATGGTATGCGATGCTCACCTGAAG
CGTATCGAACAATCGCTCAAGAATTTCAGAAAGCAGCTGCTACTCAAGGC
TTCAAAGCCTGGGTTGGTCTTCCTGAATTCTTCCTTGATGTACCAGAGCC
TATATTGATGACCCGTTATGTCCAATACACCTTGAAAATGCTGAAAACCA
AGCACAACTTTCCAGGAGATCAGATTTATTTGGCTGCTCATTCTTTGGGA
GGTGTCATGACACAAATCTATGCCAAAGGAAAATCGAACTTTGTCAAAGG
TCAAATATTGATGGGAGCAGTTCTGTTGAGAAACACAAGAAGAATCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00054837-exon-scaffold_245-1575043694:743466..744042 | TCONS_00054837-exon-scaffold_245-1575043694:743466..744042 | Clytia hemisphaerica | exon |
| TCONS_00054837-exon-scaffold_245-1575043694:741840..743173 | TCONS_00054837-exon-scaffold_245-1575043694:741840..743173 | Clytia hemisphaerica | exon |
| TCONS_00054837-exon-scaffold_245-1510915933:743466..744042 | TCONS_00054837-exon-scaffold_245-1510915933:743466..744042 | Clytia hemisphaerica | exon |
| TCONS_00054837-exon-scaffold_245-1510915933:741840..743173 | TCONS_00054837-exon-scaffold_245-1510915933:741840..743173 | Clytia hemisphaerica | exon |
| TCONS_00054837-exon-scaffold_245-1491911889:743466..744042 | TCONS_00054837-exon-scaffold_245-1491911889:743466..744042 | Clytia hemisphaerica | exon |
| TCONS_00054837-exon-scaffold_245-1491911889:741840..743173 | TCONS_00054837-exon-scaffold_245-1491911889:741840..743173 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:741840..744042 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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