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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054890 ID=TCONS_00054890|Name=TCONS_00054890|organism=Clytia hemisphaerica|type=transcript|length=815bp
cgaaaatttttttttcgcgaacataaactttcgcgattttggagtttcga
aatttttcgcgagcatttaCTTTTGCGAATGCGGCAAATTGGGAAAAAAA
AGGTTtaacagaaattttcaaaaaacacagCAGtcctttttcactaaaat
gtaAACTGTAAAAAGCCtattttacaaagaaaacttCGAATCTAAGCTTC
ATCAAATAGATTGAAAGGGATTGATAAATAAGAGTTGCAGACAATGGAGA
ACTGTTACACATTTACAGCTGCAGTCAGAGGATATCACTATTACAGAAGG
GGTTGGAAACCAAAAGAAAACGAATTACTTCGATGTTTATTTGAAGAAAA
CAATGATCCTTATGACAGATTTGCTATCAAAACTATGACATCCGATGGAG
CAACGGTTGGCCATCTACCAAGAGAAATTTCTAGAATTACAAAATTTTTC
ATGGATCGTGGGGCTGTAGTTTCTGTTCAACTAACCTCCAGGCATTATCG
AAGGTCACCCCTTGTCCAGGGAGGTATGGAGATTGCTTGTTTGGTTACTG
TTGAAATACCAGCTACcaagaaaaacactgaaattgCCGAGCTATATATT
CAACTTGTTAGAGAGCGATATACAAACCCAAAGGAAGAGGATATTCTTGG
TTGCTATGTTACAGAAATTGAAGAAGAGGCTGTAATTTTCGCCATCGAGC
AAGGCAAAAACAGAGAGAAAACCCCTTCCAGAAAAGCAGCATCGCTATCG
AAAAGTCGTCAACTTCCTCGCAAGAAACAAAAACAGTTAGACATTAGAAC
ATTATTTGCTGGAGC Run BLAST on NCBI protein sequence of TCONS_00054890-protein >TCONS_00054890-protein ID=TCONS_00054890-protein|Name=TCONS_00054890-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MENCYTFTAAVRGYHYYRRGWKPKENELLRCLFEENNDPYDRFAIKTMTS
DGATVGHLPREISRITKFFMDRGAVVSVQLTSRHYRRSPLVQGGMEIACL
VTVEIPATKKNTEIAELYIQLVRERYTNPKEEDILGCYVTEIEEEAVIFA
IEQGKNREKTPSRKAASLSKSRQLPRKKQKQLDIRTLFAG Run BLAST on NCBI transcript from alignment at scaffold_245:903247..904061 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054890 ID=TCONS_00054890|Name=TCONS_00054890|organism=Clytia hemisphaerica|type=transcript|length=815bp|location=Sequence derived from alignment at scaffold_245:903247..904061 (Clytia hemisphaerica)
GCTCCAGCAAATAATGTTCTAATGTCTAACTGTTTTTGTTTCTTGCGAGG
AAGTTGACGACTTTTCGATAGCGATGCTGCTTTTCTGGAAGGGGTTTTCT
CTCTGTTTTTGCCTTGCTCGATGGCGAAAATTACAGCCTCTTCTTCAATT
TCTGTAACATAGCAACCAAGAATATCCTCTTCCTTTGGGTTTGTATATCG
CTCTCTAACAAGTTGAATATATAGCTCGGcaatttcagtgtttttcttgG
TAGCTGGTATTTCAACAGTAACCAAACAAGCAATCTCCATACCTCCCTGG
ACAAGGGGTGACCTTCGATAATGCCTGGAGGTTAGTTGAACAGAAACTAC
AGCCCCACGATCCATGAAAAATTTTGTAATTCTAGAAATTTCTCTTGGTA
GATGGCCAACCGTTGCTCCATCGGATGTCATAGTTTTGATAGCAAATCTG
TCATAAGGATCATTGTTTTCTTCAAATAAACATCGAAGTAATTCGTTTTC
TTTTGGTTTCCAACCCCTTCTGTAATAGTGATATCCTCTGACTGCAGCTG
TAAATGTGTAACAGTTCTCCATTGTCTGCAACTCTTATTTATCAATCCCT
TTCAATCTATTTGATGAAGCTTAGATTCGaagttttctttgtaaaataGG
CTTTTTACAGTTtacattttagtgaaaaaggaCTGctgtgttttttgaaa
atttctgttaAACCTTTTTTTTCCCAATTTGCCGCATTCGCAAAAGtaaa
tgctcgcgaaaaatttcgaaactccaaaatcgcgaaagtttatgttcgcg
aaaaaaaaattttcg Coding sequence (CDS) from alignment at scaffold_245:903247..904061 >TCONS_00054890 ID=TCONS_00054890|Name=TCONS_00054890|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_245:903247..904061 (Clytia hemisphaerica)
TCCAGCAAATAATGTTCTAATGTCTAACTGTTTTTGTTTCTTGCGAGGAA
GTTGACGACTTTTCGATAGCGATGCTGCTTTTCTGGAAGGGGTTTTCTCT
CTGTTTTTGCCTTGCTCGATGGCGAAAATTACAGCCTCTTCTTCAATTTC
TGTAACATAGCAACCAAGAATATCCTCTTCCTTTGGGTTTGTATATCGCT
CTCTAACAAGTTGAATATATAGCTCGGcaatttcagtgtttttcttgGTA
GCTGGTATTTCAACAGTAACCAAACAAGCAATCTCCATACCTCCCTGGAC
AAGGGGTGACCTTCGATAATGCCTGGAGGTTAGTTGAACAGAAACTACAG
CCCCACGATCCATGAAAAATTTTGTAATTCTAGAAATTTCTCTTGGTAGA
TGGCCAACCGTTGCTCCATCGGATGTCATAGTTTTGATAGCAAATCTGTC
ATAAGGATCATTGTTTTCTTCAAATAAACATCGAAGTAATTCGTTTTCTT
TTGGTTTCCAACCCCTTCTGTAATAGTGATATCCTCTGACTGCAGCTGTA
AATGTGTAACAGTTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054890-exon-scaffold_245-1491911889:903247..904061 | TCONS_00054890-exon-scaffold_245-1491911889:903247..904061 | Clytia hemisphaerica | exon |
| TCONS_00054890-exon-scaffold_245-1510915933:903247..904061 | TCONS_00054890-exon-scaffold_245-1510915933:903247..904061 | Clytia hemisphaerica | exon |
| TCONS_00054890-exon-scaffold_245-1575043694:903247..904061 | TCONS_00054890-exon-scaffold_245-1575043694:903247..904061 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:903247..904061 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014905 | HIRAN |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016818 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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