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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054891 ID=TCONS_00054891|Name=TCONS_00054891|organism=Clytia hemisphaerica|type=transcript|length=2427bp
CATAGACTAAAGAAAAATTCCATAGACGGGAAACGAACAATAGGCGCATT
GTTTTAGCGAGAGGAACTTGAAATATTCGTGCCCAGACCTTCTGAATggg
aagaaaaattcaaaatggcggccagcTCAAGTAATTCAGGCAGTGATTAC
CCAATTGAAGATATCCTTTCCTTGCTTGATGCTGGTTTTTTCGACTGTGA
GGAAGAAGTATCGGAGCAGATTAACTCTATGGAGTCAGATGTAAGTTCCA
ATGCaaatctttgttcttttttcacACGTAAACCTTCCCTTTATACCAAT
AATATTTGCTTTacttttgactgcttttaaggTGTAAGGGTGCATGCAAT
AGTTTCTATACTTATGTTTGGTTATGATGTAGGACACCCAAATCAAGCAT
AGAGCAACATAATCCAGacctttcaaaaatcttttctttcaATCACTTTA
ACAATCAAGTTTTCTTGATTCTTTCAGTTTCAATGATGGAAAATACTTGG
AAAATTAACTAATTGAAAGTTAATAATtcaacttttgttttctttgtctA
CAGCTTACAGAAACATCACAAGTGGCAACATTTGATTGTGAAATATGCGG
AAAGATTTGCAAGACAAAGGGTGGAATAAAGAGACATAAAGCAGCAAAAC
ATCCACACGAAGTGtatttggaaaaagttaaagaGAAGGAGGAAAAAACA
AAGATTGCAAGTGACAAATTGGGATCGATGGATATTATGAGACTAATCAA
AGAATCTGCTGAAAGATTATCACATGACCAGTGCTATCCAGAGGAGTTTC
GATCCCAGtttattgattttgaaattacGCAAAATCAAGGTGATGTAATC
TTTAAACAATTGGAGGAGATCATCTTCAAATAcaaggaaaataaaaatga
cgaaTTCCTTGCTGCTTTTCGGCGAATAACTTCATCAAAACTTGATCTAT
TATTTACTGACAAACGAGTTCATAACCTTCTAATGTTGGAATTTGCTAGC
AGTTGTGTAAAGCATCTAAAGCCAAATCAAAGTGATGCAAATGTTGATAT
TAGAACTGCACTGGGGACAAAGGAGAAGGCAGCCCTCAATTACATAGCCG
GACATGCAGTCCACAAAATCTATGCAAAACTACGCACCAGTAAACATTGG
CGAacagatatttttcaaaaatcatttaatcttttgaagaaattcaaaat
tgaacCAACTGACATGGAAGAGCATGCTTTGATTAAAGCAAAAAATAGAG
GTGGATTGTGGTGTGTCTCCAAATTAACGGTACAAGTTTTTGAACAAGCT
GAACTTTTGTTCACAAGTGAAACATGTAGACATGTCACAAGGGTTGACTA
TAAAGCAATGGTcagaaatttaatgaaaaacttATTGGTTAAAAAGTATT
GGGAACAGCTTTTAAGTGATTCACCAGAAATAGATACAGATCTTGGGAAA
GACTTACTTGATCAACTACTCTCTCTTTACCTCAAAATCAGAGGATTTTC
ATATGCAAAAAGCATAAGGGAAAAACACAAGTGTAAAAGCAAGTCAACTC
AAAAACACTCTTTGAgagcaaatttgaaaaaatcagagaaagagGAGCCA
TAAATATATTTATAACAATAATTATATAATAATATACATATATTTCATTT
TGTATTGGTTTGTTTTAACTTGTCTTGAGGTCTATACTATAATAATGTAT
CTGCATTTTTGATAATAATGTTGGACTTTTTCATTTGCATTATATTGTAT
GAAATGATTTTACAATTTGGACAAGCCAAATTTCTTTTTACAGAGTTACT
GTTGCTGTTTATTATGCTTTTCACCAAGGTTTTTATAACTTGAATTTTTC
ATTCtgattcaaaagctttttctgtttttatagtttcttgtatatttttt
tatttaccacaaaaaacaaaagttgtaATTACATGAATTTATTATATTTA
AAGTAATTTATTTTATGCTGCCAATGTATTTTCCATATGtttccttttaa
aattttcactgaaGGAATCTTAGAACTGCCTAACTTTCCAGAAAGCCGTT
TATCATTCTGACTGATCTGATTGGTcgatttgttattttttattttgaaa
ttgtaaAATCCAACTGTCTGATTGCTCAAATTAACTCAAATGATAAACAG
CTTTCTGGAAAGTTAAGTAGTTCTTCGTCATATGTTTGGTATTTTGAGTA
CTAAGCAGATGCCAAAGTACACAATGGGGAAAACTTGATACCATTAGTCT
TCAAAGTAAAAACCAAATTCTATGGCTTTACTGTGAAAGTTGtacaattt
ttatttctttcaaatGCCTAAATTCCCCATATTCTTtatattatgttaat
ttatAAAGCGTTTTTTAGGCAAATATTTTGGTCAagaatttttgaattat
tgtgTTATCAGTATCACTGATTTATCG Run BLAST on NCBI transcript from alignment at scaffold_246:51061..53487+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054891 ID=TCONS_00054891|Name=TCONS_00054891|organism=Clytia hemisphaerica|type=transcript|length=2427bp|location=Sequence derived from alignment at scaffold_246:51061..53487+ (Clytia hemisphaerica)
CATAGACTAAAGAAAAATTCCATAGACGGGAAACGAACAATAGGCGCATT
GTTTTAGCGAGAGGAACTTGAAATATTCGTGCCCAGACCTTCTGAATggg
aagaaaaattcaaaatggcggccagcTCAAGTAATTCAGGCAGTGATTAC
CCAATTGAAGATATCCTTTCCTTGCTTGATGCTGGTTTTTTCGACTGTGA
GGAAGAAGTATCGGAGCAGATTAACTCTATGGAGTCAGATGTAAGTTCCA
ATGCaaatctttgttcttttttcacACGTAAACCTTCCCTTTATACCAAT
AATATTTGCTTTacttttgactgcttttaaggTGTAAGGGTGCATGCAAT
AGTTTCTATACTTATGTTTGGTTATGATGTAGGACACCCAAATCAAGCAT
AGAGCAACATAATCCAGacctttcaaaaatcttttctttcaATCACTTTA
ACAATCAAGTTTTCTTGATTCTTTCAGTTTCAATGATGGAAAATACTTGG
AAAATTAACTAATTGAAAGTTAATAATtcaacttttgttttctttgtctA
CAGCTTACAGAAACATCACAAGTGGCAACATTTGATTGTGAAATATGCGG
AAAGATTTGCAAGACAAAGGGTGGAATAAAGAGACATAAAGCAGCAAAAC
ATCCACACGAAGTGtatttggaaaaagttaaagaGAAGGAGGAAAAAACA
AAGATTGCAAGTGACAAATTGGGATCGATGGATATTATGAGACTAATCAA
AGAATCTGCTGAAAGATTATCACATGACCAGTGCTATCCAGAGGAGTTTC
GATCCCAGtttattgattttgaaattacGCAAAATCAAGGTGATGTAATC
TTTAAACAATTGGAGGAGATCATCTTCAAATAcaaggaaaataaaaatga
cgaaTTCCTTGCTGCTTTTCGGCGAATAACTTCATCAAAACTTGATCTAT
TATTTACTGACAAACGAGTTCATAACCTTCTAATGTTGGAATTTGCTAGC
AGTTGTGTAAAGCATCTAAAGCCAAATCAAAGTGATGCAAATGTTGATAT
TAGAACTGCACTGGGGACAAAGGAGAAGGCAGCCCTCAATTACATAGCCG
GACATGCAGTCCACAAAATCTATGCAAAACTACGCACCAGTAAACATTGG
CGAacagatatttttcaaaaatcatttaatcttttgaagaaattcaaaat
tgaacCAACTGACATGGAAGAGCATGCTTTGATTAAAGCAAAAAATAGAG
GTGGATTGTGGTGTGTCTCCAAATTAACGGTACAAGTTTTTGAACAAGCT
GAACTTTTGTTCACAAGTGAAACATGTAGACATGTCACAAGGGTTGACTA
TAAAGCAATGGTcagaaatttaatgaaaaacttATTGGTTAAAAAGTATT
GGGAACAGCTTTTAAGTGATTCACCAGAAATAGATACAGATCTTGGGAAA
GACTTACTTGATCAACTACTCTCTCTTTACCTCAAAATCAGAGGATTTTC
ATATGCAAAAAGCATAAGGGAAAAACACAAGTGTAAAAGCAAGTCAACTC
AAAAACACTCTTTGAgagcaaatttgaaaaaatcagagaaagagGAGCCA
TAAATATATTTATAACAATAATTATATAATAATATACATATATTTCATTT
TGTATTGGTTTGTTTTAACTTGTCTTGAGGTCTATACTATAATAATGTAT
CTGCATTTTTGATAATAATGTTGGACTTTTTCATTTGCATTATATTGTAT
GAAATGATTTTACAATTTGGACAAGCCAAATTTCTTTTTACAGAGTTACT
GTTGCTGTTTATTATGCTTTTCACCAAGGTTTTTATAACTTGAATTTTTC
ATTCtgattcaaaagctttttctgtttttatagtttcttgtatatttttt
tatttaccacaaaaaacaaaagttgtaATTACATGAATTTATTATATTTA
AAGTAATTTATTTTATGCTGCCAATGTATTTTCCATATGtttccttttaa
aattttcactgaaGGAATCTTAGAACTGCCTAACTTTCCAGAAAGCCGTT
TATCATTCTGACTGATCTGATTGGTcgatttgttattttttattttgaaa
ttgtaaAATCCAACTGTCTGATTGCTCAAATTAACTCAAATGATAAACAG
CTTTCTGGAAAGTTAAGTAGTTCTTCGTCATATGTTTGGTATTTTGAGTA
CTAAGCAGATGCCAAAGTACACAATGGGGAAAACTTGATACCATTAGTCT
TCAAAGTAAAAACCAAATTCTATGGCTTTACTGTGAAAGTTGtacaattt
ttatttctttcaaatGCCTAAATTCCCCATATTCTTtatattatgttaat
ttatAAAGCGTTTTTTAGGCAAATATTTTGGTCAagaatttttgaattat
tgtgTTATCAGTATCACTGATTTATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054891-exon-scaffold_246-1491911889:51061..53487 | TCONS_00054891-exon-scaffold_246-1491911889:51061..53487 | Clytia hemisphaerica | exon |
| TCONS_00054891-exon-scaffold_246-1510915933:51061..53487 | TCONS_00054891-exon-scaffold_246-1510915933:51061..53487 | Clytia hemisphaerica | exon |
| TCONS_00054891-exon-scaffold_246-1575043694:51061..53487 | TCONS_00054891-exon-scaffold_246-1575043694:51061..53487 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_246 | supercontig | scaffold_246:51061..53487 + |
Blast
The following BLAST results are available for this feature:
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