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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055292 ID=TCONS_00055292|Name=TCONS_00055292|organism=Clytia hemisphaerica|type=transcript|length=1840bp
CTTTCATTGCTAATTCTTAGTAAGAGTAATATATagtttgaagaaaataa
atatttacaaTTTGATATTATGTATAAGATATGATTGCATACGCCAGCGG
AGcagtttatttaaaaaatactaaaattaccGATTCCTTAAAAGTACGTG
GCACAAATTTCAGCATTCTTACAAATCTGGGTCATCAGTATTACTTGTGG
AGAATCGAAGCAAAATATACaatagagtctctttaactcgattGTCTAAT
TAGCTCAAATAAGTTTTCTCGTTCCTTCAGATAAAAATGTCTTTATAAAC
CTTATACgtcataactcgaaatttccttaactcgaacatttttgtgttcc
ccgtgtgtgttcgagttatagagactcaacTGTACTATCTTACTGATTTC
TTAAAAGTGCGTCCGACAAAAAAATATCGGGGCCGTCATATATATTTGTA
GAGAATCAAAGTAAAATATTAGGTGAAATATGACACGCGTACTTTTTGGG
AAATCTTTAGTCCAAAAGATATCTGAATAAATTTACATACagcttttaaa
agtttttaagcaaaatttagtctatACAATTCATAGTTCTACATTTTATG
TTCTCAAACGATTTTCCACAATTAAGATTTTTGAACCCTCTGCCATAAAT
AAACATTCATTTTTATCTCCATAatgataaaacaaataaaatacaaGATT
CTTAGAGACAAAATGCTCTAAGCTGATATATCAACCAAGATACCATTTTA
TCTCTATTATAGCACAAAATGAGAGACACGATTTTCATAGATTAAATGGA
CCAGTCAGATGTATTAATCACCAGCTTATCATTTTATCTCCATTATAAAA
CATATGAGAGACACGATTTTCATAGATTGATTGACCAGGCGGATATATTA
ATCACCAAGGTATCATTCTCAATATATTTATTCAAATCTGTCAACggtag
aaattcaaaaaatccatAACTCTTATCACTATCTCTTGAAGGTCTACGAA
AAGCTTCAGAGCATTGTGATAAATTTGTATTTATTTGACAAGCATTTTCA
AGTTCTCCTTCATGTATAACACCGAACTCTATACAACATATAAGCGGCCA
TCTTAAATGTTCATCTATAGGGCCTTCCAAAAGTCTTATAAAAATCGACA
TGTGTTTATTTTGTGATTTCTCATATCCATTGGGGTATAATATCGCTTGT
GCTTTATAACCGCTGACCATAAAAAATGGCTCACTAGTTACGTAATACTC
TTCGTTTCTCAATCGTGCGTTTTTACGTTTGGCCGCGAAATCGCTAATAC
ACCAGGCGTACGGGCACCAATTTTTCTCAGTCTTTATAAAAGAATGCATG
ACGTCACGAGTTTCCTCGACTGTCTCCCCAGCCTCttcgattttattttt
gattttattcatcTTTTTACGCTTTTTTCGTATCTTTGTTGTGActtctt
ttaaaacattttcctgtGTTTCAATTCGCGTTTCGAGTTTTTCGatcttt
ttacacttttttagtAGTGTTGTTTTGAGTTTGTTGATCATATCTTGCTG
TTCTGTGAGTTTTTGTTCTTGTTTGCGAAACTGTTCTTGTAATTCTTCGA
TCGCTTTGTCGCGTTGTTTCGGTCTATCCATATAGTCTTTGGCAATCGAT
ATGaatcgttttatttttgatagtaccatcattttttatattttgttagC
ATGTAATGCTGTATACTTTGTGATTGTATTTTTATTTGGGTTATCTAtat
agaaagaaagaaaaattataaattttatttatcaaacaaatttaggCTGG
GAATCACTCATTGAAATAAAGACGAGATAACATAACCAAG Run BLAST on NCBI protein sequence of TCONS_00055292-protein >TCONS_00055292-protein ID=TCONS_00055292-protein|Name=TCONS_00055292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MMVLSKIKRFISIAKDYMDRPKQRDKAIEELQEQFRKQEQKLTEQQDMIN
KLKTTLLKKCKKIEKLETRIETQENVLKEVTTKIRKKRKKMNKIKNKIEE
AGETVEETRDVMHSFIKTEKNWCPYAWCISDFAAKRKNARLRNEEYYVTS
EPFFMVSGYKAQAILYPNGYEKSQNKHMSIFIRLLEGPIDEHLRWPLICC
IEFGVIHEGELENACQINTNLSQCSEAFRRPSRDSDKSYGFFEFLPLTDL
NKYIENDTLVINISAWSINL Run BLAST on NCBI transcript from alignment at scaffold_251:836703..838542 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055292 ID=TCONS_00055292|Name=TCONS_00055292|organism=Clytia hemisphaerica|type=transcript|length=1840bp|location=Sequence derived from alignment at scaffold_251:836703..838542 (Clytia hemisphaerica)
CTTGGTTATGTTATCTCGTCTTTATTTCAATGAGTGATTCCCAGcctaaa
tttgtttgataaataaaatttataatttttctttctttctataTAGATAA
CCCAAATAAAAATACAATCACAAAGTATACAGCATTACATGctaacaaaa
tataaaaaatgatggtactatcaaaaataaaacgattCATATCGATTGCC
AAAGACTATATGGATAGACCGAAACAACGCGACAAAGCGATCGAAGAATT
ACAAGAACAGTTTCGCAAACAAGAACAAAAACTCACAGAACAGCAAGATA
TGATCAACAAACTCAAAACAACACTactaaaaaagtgtaaaaagatCGAA
AAACTCGAAACGCGAATTGAAACacaggaaaatgttttaaaagaagTCAC
AACAAAGATACGAAAAAAGCGTAAAAAgatgaataaaatcaaaaataaaa
tcgaaGAGGCTGGGGAGACAGTCGAGGAAACTCGTGACGTCATGCATTCT
TTTATAAAGACTGAGAAAAATTGGTGCCCGTACGCCTGGTGTATTAGCGA
TTTCGCGGCCAAACGTAAAAACGCACGATTGAGAAACGAAGAGTATTACG
TAACTAGTGAGCCATTTTTTATGGTCAGCGGTTATAAAGCACAAGCGATA
TTATACCCCAATGGATATGAGAAATCACAAAATAAACACATGTCGATTTT
TATAAGACTTTTGGAAGGCCCTATAGATGAACATTTAAGATGGCCGCTTA
TATGTTGTATAGAGTTCGGTGTTATACATGAAGGAGAACTTGAAAATGCT
TGTCAAATAAATACAAATTTATCACAATGCTCTGAAGCTTTTCGTAGACC
TTCAAGAGATAGTGATAAGAGTTatggattttttgaatttctaccGTTGA
CAGATTTGAATAAATATATTGAGAATGATACCTTGGTGATTAATATATCC
GCCTGGTCAATCAATCTATGAAAATCGTGTCTCTCATATGTTTTATAATG
GAGATAAAATGATAAGCTGGTGATTAATACATCTGACTGGTCCATTTAAT
CTATGAAAATCGTGTCTCTCATTTTGTGCTATAATAGAGATAAAATGGTA
TCTTGGTTGATATATCAGCTTAGAGCATTTTGTCTCTAAGAATCttgtat
tttatttgttttatcatTATGGAGATAAAAATGAATGTTTATTTATGGCA
GAGGGTTCAAAAATCTTAATTGTGGAAAATCGTTTGAGAACATAAAATGT
AGAACTATGAATTGTatagactaaattttgcttaaaaacttttaaaagct
GTATGTAAATTTATTCAGATATCTTTTGGACTAAAGATTTCCCAAAAAGT
ACGCGTGTCATATTTCACCTAATATTTTACTTTGATTCTCTACAAATATA
TATGACGGCCCCGATATTTTTTTGTCGGACGCACTTTTAAGAAATCAGTA
AGATAGTACAgttgagtctctataactcgaacacacacggggaacacaaa
aatgttcgagttaaggaaatttcgagttatgacGTATAAGGTTTATAAAG
ACATTTTTATCTGAAGGAACGAGAAAACTTATTTGAGCTAATTAGACaat
cgagttaaagagactctattGTATATTTTGCTTCGATTCTCCACAAGTAA
TACTGATGACCCAGATTTGTAAGAATGCTGAAATTTGTGCCACGTACTTT
TAAGGAATCggtaattttagtattttttaaataaactgCTCCGCTGGCGT
ATGCAATCATATCTTATACATAATATCAAAttgtaaatatttattttctt
caaactATATATTACTCTTACTAAGAATTAGCAATGAAAG Coding sequence (CDS) from alignment at scaffold_251:836703..838542 >TCONS_00055292 ID=TCONS_00055292|Name=TCONS_00055292|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at scaffold_251:836703..838542 (Clytia hemisphaerica)
atgatggtactatcaaaaataaaacgattCATATCGATTGCCAAAGACTA
TATGGATAGACCGAAACAACGCGACAAAGCGATCGAAGAATTACAAGAAC
AGTTTCGCAAACAAGAACAAAAACTCACAGAACAGCAAGATATGATCAAC
AAACTCAAAACAACACTactaaaaaagtgtaaaaagatCGAAAAACTCGA
AACGCGAATTGAAACacaggaaaatgttttaaaagaagTCACAACAAAGA
TACGAAAAAAGCGTAAAAAgatgaataaaatcaaaaataaaatcgaaGAG
GCTGGGGAGACAGTCGAGGAAACTCGTGACGTCATGCATTCTTTTATAAA
GACTGAGAAAAATTGGTGCCCGTACGCCTGGTGTATTAGCGATTTCGCGG
CCAAACGTAAAAACGCACGATTGAGAAACGAAGAGTATTACGTAACTAGT
GAGCCATTTTTTATGGTCAGCGGTTATAAAGCACAAGCGATATTATACCC
CAATGGATATGAGAAATCACAAAATAAACACATGTCGATTTTTATAAGAC
TTTTGGAAGGCCCTATAGATGAACATTTAAGATGGCCGCTTATATGTTGT
ATAGAGTTCGGTGTTATACATGAAGGAGAACTTGAAAATGCTTGTCAAAT
AAATACAAATTTATCACAATGCTCTGAAGCTTTTCGTAGACCTTCAAGAG
ATAGTGATAAGAGTTatggattttttgaatttctaccGTTGACAGATTTG
AATAAATATATTGAGAATGATACCTTGGTGATTAATATATCCGCCTGGTC
AATCAATCTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055292-exon-scaffold_251-1491911889:836703..838542 | TCONS_00055292-exon-scaffold_251-1491911889:836703..838542 | Clytia hemisphaerica | exon |
| TCONS_00055292-exon-scaffold_251-1510915933:836703..838542 | TCONS_00055292-exon-scaffold_251-1510915933:836703..838542 | Clytia hemisphaerica | exon |
| TCONS_00055292-exon-scaffold_251-1575043694:836703..838542 | TCONS_00055292-exon-scaffold_251-1575043694:836703..838542 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:836703..838542 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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