TCONS_00055580 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055580
Unique NameTCONS_00055580
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055580 ID=TCONS_00055580|Name=TCONS_00055580|organism=Clytia hemisphaerica|type=transcript|length=415bp
CGCTTCAATCGCTCTCCGTCCTCAAAAGCGTAGATACATATCTCAGACTA
TAGCTAATTATATTCATGAATATGCACCATTGAAAAGTCTTCTGAGGTTA
AATCACAAACTCAGCAGCTGAGTGACGTAAGATCGGTCAATAAGCCACTT
GAAACCAATCATCTGTTGGGTCCTTTGGAATACATGGTAATGGCACATAT
CACGAATATATAAAACGATGGCGTTTTAAATTTGAAGGCCTCGCAAACGA
GTTtcaaatttagaacgccatgtatAAAACACATAAAAGGTAAAAGCCTG
TTAATTTCACATATCATGCCAAtggaaagaaaatataaagaaatagAAGT
AAAGAAAGACCAAAGAAAGATTTCTTTTCGATAATCTTGAATACACAGTA
ACCACTAACATTACC
Run BLAST on NCBI

transcript from alignment at scaffold_253:6254..6668

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055580 ID=TCONS_00055580|Name=TCONS_00055580|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at scaffold_253:6254..6668 (Clytia hemisphaerica)
GGTAATGTTAGTGGTTACTGTGTATTCAAGATTATCGAAAAGAAATCTTT
CTTTGGTCTTTCTTTACTTctatttctttatattttctttccaTTGGCAT
GATATGTGAAATTAACAGGCTTTTACCTTTTATGTGTTTTatacatggcg
ttctaaatttgaAACTCGTTTGCGAGGCCTTCAAATTTAAAACGCCATCG
TTTTATATATTCGTGATATGTGCCATTACCATGTATTCCAAAGGACCCAA
CAGATGATTGGTTTCAAGTGGCTTATTGACCGATCTTACGTCACTCAGCT
GCTGAGTTTGTGATTTAACCTCAGAAGACTTTTCAATGGTGCATATTCAT
GAATATAATTAGCTATAGTCTGAGATATGTATCTACGCTTTTGAGGACGG
AGAGCGATTGAAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034952XLOC_034952Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055580-exon-scaffold_253-1491911889:6254..6668TCONS_00055580-exon-scaffold_253-1491911889:6254..6668Clytia hemisphaericaexon
TCONS_00055580-exon-scaffold_253-1510915933:6254..6668TCONS_00055580-exon-scaffold_253-1510915933:6254..6668Clytia hemisphaericaexon
TCONS_00055580-exon-scaffold_253-1575043694:6254..6668TCONS_00055580-exon-scaffold_253-1575043694:6254..6668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:6254..6668 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.172222	0.167944	0.194999	0	0	0.367056	0.221419	0.207289	0	0.359529	0	0	0	0	0	0	0	0	0	0	0	0	0.197466	0	0	2.47538	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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