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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055584 ID=TCONS_00055584|Name=TCONS_00055584|organism=Clytia hemisphaerica|type=transcript|length=1074bp
AATCGATTGGACTGTTTACAAACAAATCGTAGGGATCCCAACAAACCAGA
TTGCATCAATGATTTACAACGCATGTGACGATGCTACCCAAACAAGTATC
ATCAACAACCATCCAAACTTTCTAACATACAATGAGAACAATTTCCTGAA
TGCCATTGAAACCATTGTTACGAAAAAGTCGAATCCAACTGTCCACAGAA
TGCAATTTTCATCACTATTGCAGCACGAAAATGAACAACTAAGGGACTAT
TTAGTTCGTTTAAAGTCGTCAGCACAAGACTGTGAATTTTCATGTCCGCA
ATGTCATCATGATCTGTCACCTTCGTACATCAGAGACCAATTGATCCGGG
GCTTACATAAAGAGGTTCTACAGGTCGACATCCTTGCTAAGGCCACCACC
CTCAAGCATGCAGAAGCCTTCGAAACGGCCCTCCAAGATCATGCCAGCTT
ACAAGATGCATCCGATGCAATGGCGGTCCGAACATCGCAATATCAACGCC
AAAAGCTTCCAACCAGACAAGCTCCGTGTTCCGGTTGTGGCAGCCTTACC
CACGGATCAAAAGATCGGTCATCCAAGTGTCCAGCATGGGGGAAGACATG
CCACAATTGCAAattatcaaatcatttttcaaaagtgtgTTGGAAACCAA
AATCAGAAACAGCCGAAGCACTATTGGCCCATGTCACCTATGACGAAAAA
TGCAAAGCGTTCCGCCCAACCGCAGAGATCACTGAAATAGATGCGAAACT
TACGCCAACCTCCAATACGACCAAACCGACACCAACGCCAATGAAAATCT
TTCCTGATAGTGGAGCTAGCATTTGTTTAGCTGGACCCCAACATTTGCAT
AAACTCAAACTAAACAAACAATCATTGACCCCATGCAACAAACTAGTTCG
AGCCGTTGGCGGATCCACATTACATTGTTCTGGCTGGCTACCAATGACTT
TCACAATAGACAATCACACTACTACTCAACCGCTATACATTTGTGAAAAA
GTTGACAGAATTTACGTCAGCCGTAAAGGGTGTACAGAATTGAACATTCT
ACCAGAGACATTTCCATACCCCAT Run BLAST on NCBI protein sequence of TCONS_00055584-protein >TCONS_00055584-protein ID=TCONS_00055584-protein|Name=TCONS_00055584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
IDWTVYKQIVGIPTNQIASMIYNACDDATQTSIINNHPNFLTYNENNFLN
AIETIVTKKSNPTVHRMQFSSLLQHENEQLRDYLVRLKSSAQDCEFSCPQ
CHHDLSPSYIRDQLIRGLHKEVLQVDILAKATTLKHAEAFETALQDHASL
QDASDAMAVRTSQYQRQKLPTRQAPCSGCGSLTHGSKDRSSKCPAWGKTC
HNCKLSNHFSKVCWKPKSETAEALLAHVTYDEKCKAFRPTAEITEIDAKL
TPTSNTTKPTPTPMKIFPDSGASICLAGPQHLHKLKLNKQSLTPCNKLVR
AVGGSTLHCSGWLPMTFTIDNHTTTQPLYICEKVDRIYVSRKGCTELNIL
PETFPYP Run BLAST on NCBI transcript from alignment at scaffold_253:72934..74007 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055584 ID=TCONS_00055584|Name=TCONS_00055584|organism=Clytia hemisphaerica|type=transcript|length=1074bp|location=Sequence derived from alignment at scaffold_253:72934..74007 (Clytia hemisphaerica)
ATGGGGTATGGAAATGTCTCTGGTAGAATGTTCAATTCTGTACACCCTTT
ACGGCTGACGTAAATTCTGTCAACTTTTTCACAAATGTATAGCGGTTGAG
TAGTAGTGTGATTGTCTATTGTGAAAGTCATTGGTAGCCAGCCAGAACAA
TGTAATGTGGATCCGCCAACGGCTCGAACTAGTTTGTTGCATGGGGTCAA
TGATTGTTTGTTTAGTTTGAGTTTATGCAAATGTTGGGGTCCAGCTAAAC
AAATGCTAGCTCCACTATCAGGAAAGATTTTCATTGGCGTTGGTGTCGGT
TTGGTCGTATTGGAGGTTGGCGTAAGTTTCGCATCTATTTCAGTGATCTC
TGCGGTTGGGCGGAACGCTTTGCATTTTTCGTCATAGGTGACATGGGCCA
ATAGTGCTTCGGCTGTTTCTGATTTTGGTTTCCAAcacacttttgaaaaa
tgatttgataatTTGCAATTGTGGCATGTCTTCCCCCATGCTGGACACTT
GGATGACCGATCTTTTGATCCGTGGGTAAGGCTGCCACAACCGGAACACG
GAGCTTGTCTGGTTGGAAGCTTTTGGCGTTGATATTGCGATGTTCGGACC
GCCATTGCATCGGATGCATCTTGTAAGCTGGCATGATCTTGGAGGGCCGT
TTCGAAGGCTTCTGCATGCTTGAGGGTGGTGGCCTTAGCAAGGATGTCGA
CCTGTAGAACCTCTTTATGTAAGCCCCGGATCAATTGGTCTCTGATGTAC
GAAGGTGACAGATCATGATGACATTGCGGACATGAAAATTCACAGTCTTG
TGCTGACGACTTTAAACGAACTAAATAGTCCCTTAGTTGTTCATTTTCGT
GCTGCAATAGTGATGAAAATTGCATTCTGTGGACAGTTGGATTCGACTTT
TTCGTAACAATGGTTTCAATGGCATTCAGGAAATTGTTCTCATTGTATGT
TAGAAAGTTTGGATGGTTGTTGATGATACTTGTTTGGGTAGCATCGTCAC
ATGCGTTGTAAATCATTGATGCAATCTGGTTTGTTGGGATCCCTACGATT
TGTTTGTAAACAGTCCAATCGATT Coding sequence (CDS) from alignment at scaffold_253:72934..74007 >TCONS_00055584 ID=TCONS_00055584|Name=TCONS_00055584|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_253:72934..74007 (Clytia hemisphaerica)
GGGGTATGGAAATGTCTCTGGTAGAATGTTCAATTCTGTACACCCTTTAC
GGCTGACGTAAATTCTGTCAACTTTTTCACAAATGTATAGCGGTTGAGTA
GTAGTGTGATTGTCTATTGTGAAAGTCATTGGTAGCCAGCCAGAACAATG
TAATGTGGATCCGCCAACGGCTCGAACTAGTTTGTTGCATGGGGTCAATG
ATTGTTTGTTTAGTTTGAGTTTATGCAAATGTTGGGGTCCAGCTAAACAA
ATGCTAGCTCCACTATCAGGAAAGATTTTCATTGGCGTTGGTGTCGGTTT
GGTCGTATTGGAGGTTGGCGTAAGTTTCGCATCTATTTCAGTGATCTCTG
CGGTTGGGCGGAACGCTTTGCATTTTTCGTCATAGGTGACATGGGCCAAT
AGTGCTTCGGCTGTTTCTGATTTTGGTTTCCAAcacacttttgaaaaatg
atttgataatTTGCAATTGTGGCATGTCTTCCCCCATGCTGGACACTTGG
ATGACCGATCTTTTGATCCGTGGGTAAGGCTGCCACAACCGGAACACGGA
GCTTGTCTGGTTGGAAGCTTTTGGCGTTGATATTGCGATGTTCGGACCGC
CATTGCATCGGATGCATCTTGTAAGCTGGCATGATCTTGGAGGGCCGTTT
CGAAGGCTTCTGCATGCTTGAGGGTGGTGGCCTTAGCAAGGATGTCGACC
TGTAGAACCTCTTTATGTAAGCCCCGGATCAATTGGTCTCTGATGTACGA
AGGTGACAGATCATGATGACATTGCGGACATGAAAATTCACAGTCTTGTG
CTGACGACTTTAAACGAACTAAATAGTCCCTTAGTTGTTCATTTTCGTGC
TGCAATAGTGATGAAAATTGCATTCTGTGGACAGTTGGATTCGACTTTTT
CGTAACAATGGTTTCAATGGCATTCAGGAAATTGTTCTCATTGTATGTTA
GAAAGTTTGGATGGTTGTTGATGATACTTGTTTGGGTAGCATCGTCACAT
GCGTTGTAAATCATTGATGCAATCTGGTTTGTTGGGATCCCTACGATTTG
TTTGTAAACAGTCCAATCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055584-exon-scaffold_253-1491911889:72934..74007 | TCONS_00055584-exon-scaffold_253-1491911889:72934..74007 | Clytia hemisphaerica | exon |
| TCONS_00055584-exon-scaffold_253-1510915933:72934..74007 | TCONS_00055584-exon-scaffold_253-1510915933:72934..74007 | Clytia hemisphaerica | exon |
| TCONS_00055584-exon-scaffold_253-1575043694:72934..74007 | TCONS_00055584-exon-scaffold_253-1575043694:72934..74007 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:72934..74007 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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