TCONS_00055591 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055591
Unique NameTCONS_00055591
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1966

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055591 ID=TCONS_00055591|Name=TCONS_00055591|organism=Clytia hemisphaerica|type=transcript|length=1966bp
AGTCTCTCCCCAATCGGAAAGATCTAgtttcaatcaccaattccgccctt
ctcctcttttcctctattttctatctctaactctgttttttctgatttct
ggacttagttttttctgaatttgactATTTGAAGCTATTTTGCAAATTCT
GAAATTATACTCCCACACCTcggttcgaaccaccaaatgcaagcaacctt
ggtttccaAACCCGACGCCTTACCACTTGAGCTATCGtcgcacagcaaaa
tcacgcaattaATAACATATTATAACAAACtagcaaaagacgggggtaat
gttattataatatgggtaaaagtacccctttttaagcctgactgaaattc
gagccgttactagcaaccctgcggggctcaaggcgccgagtatgcacccg
gcacagttacaagccgttactagcaaccctgaccctaaccaatgtcaatt
gaattctCTACTTGCACTAACTGATAATCGAATCCTGACCCCGGAAAATT
ACCACGGactagaaagaacgaaaaaaattgaaggggcggaattgctgatt
gaaactagttttcaccAGATCAATCGTCATCTTTTTGATCCACCTTGATC
CACGACGATCCACGTTGCTTGAAGTCTTTGGGtttatctcatttaaaacg
aatGTAAATTCAGGTGCTCTTTgcttaaaagttttttaagtaTAACGATC
ATTATGAGCAAACAGTATCGATTTGCAAGTGGATCCCCATCAAAACGGGG
TGAAAAAGCAGGGGGGATTTCTGCTGCTGCTTTTCAAGATCATTTCTCTC
GGAGACTAAATCTAGATGACGGGAAACCCAAAAGGACTATCAATCATCCT
CTTCCAGTCGTTAAAAGGAAAGAGGTGAAAGCTAAACAAAAAAAGACAGA
TTTGCCATCGAAAGAAAAAGACTTGACTgatattttgaaaggaaaaaacG
ACGAGAGAGTGCTGTCTCCTGATGGTAACAGTGGTGCAGCAGCTTTATCG
AAGAAAAACATGTCACTTGCTGAAAAGTATGGTCTCCTACCATCGCCGAT
AATGAATAAAGAGAAAGTCCTTTCTGAGCGTCAATGGGAGGTTTTAAAAA
GGAAAGCAATGGTTCGTGGAGATATTGAATCAAAATGTCCCATTTGTAAA
GAAGATTATACTTTATTTCGAGAACAAATTCTCCTTTCGTGCTCTCACAC
ATTTCACAAAAAGTGTATCTATTCATTTGAGAAATACTCTGGTAAACAAA
CTTGCCCTATTTGTCgatttgaaaattatgaaaggCGTTTGATTTTTGAT
GGAGCATTTATTTGTTCCAATAAGGCAGCTCTGAAGATACAATCAAAATG
GCGTGCTTACACAGTTAGGAAACGATTCCTATCAGAGAACAAGGATCGAG
TACCACAGAATCTTATGTTGAGAAagaaattctatgaaaaaaagTTCATG
AACATGGCAGAAGAGATCCATAACAGCTATGATATTCATAGTGCAAACGT
GGATAGTTTCATTGCCGAAATAGATCGTAATATTGCCACCAGTAAATCTT
TAATGGagaatttaaattttaacaGTGAGAGTGATTCTTGGAGCGAGATT
CATAACTTGGCTTTAAGACGTGACAATAATGAATGTCCTATATGTTTAGG
GTTGTTAAActcttcaaaaaaaatcgtCCTACTGAATTGTTCTCATTTAT
TTCACGAACGATGTCTTGCTTCATTTGAGACCTACAGTGCATGCTCGAAT
CATTTATGTCCAGTATGTAGATCAATGTACATGAAAAAGGAATACACTGT
AAAACAAAAATGAATTAGGCATGTTTGCAGACGTTTCGAAATCGAAAACG
AATTGAATTAATAgtatgtacatgtttttttttttataagcattgcactt
ataagcatatgtaggctcagatatggggaaaaattaagcatatggcaaag
CATTGCTTGAGCCTAC
Run BLAST on NCBI

protein sequence of TCONS_00055591-protein

>TCONS_00055591-protein ID=TCONS_00055591-protein|Name=TCONS_00055591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
MSKQYRFASGSPSKRGEKAGGISAAAFQDHFSRRLNLDDGKPKRTINHPL
PVVKRKEVKAKQKKTDLPSKEKDLTDILKGKNDERVLSPDGNSGAAALSK
KNMSLAEKYGLLPSPIMNKEKVLSERQWEVLKRKAMVRGDIESKCPICKE
DYTLFREQILLSCSHTFHKKCIYSFEKYSGKQTCPICRFENYERRLIFDG
AFICSNKAALKIQSKWRAYTVRKRFLSENKDRVPQNLMLRKKFYEKKFMN
MAEEIHNSYDIHSANVDSFIAEIDRNIATSKSLMENLNFNSESDSWSEIH
NLALRRDNNECPICLGLLNSSKKIVLLNCSHLFHERCLASFETYSACSNH
LCPVCRSMYMKKEYTVKQK
Run BLAST on NCBI

transcript from alignment at scaffold_253:204555..206520

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055591 ID=TCONS_00055591|Name=TCONS_00055591|organism=Clytia hemisphaerica|type=transcript|length=1966bp|location=Sequence derived from alignment at scaffold_253:204555..206520 (Clytia hemisphaerica)
GTAGGCTCAAGCAATGctttgccatatgcttaatttttccccatatctga
gcctacatatgcttataagtgcaatgcttataaaaaaaaaaacatgtaca
tacTATTAATTCAATTCGTTTTCGATTTCGAAACGTCTGCAAACATGCCT
AATTCATTTTTGTTTTACAGTGTATTCCTTTTTCATGTACATTGATCTAC
ATACTGGACATAAATGATTCGAGCATGCACTGTAGGTCTCAAATGAAGCA
AGACATCGTTCGTGAAATAAATGAGAACAATTCAGTAGGacgattttttt
tgaagagTTTAACAACCCTAAACATATAGGACATTCATTATTGTCACGTC
TTAAAGCCAAGTTATGAATCTCGCTCCAAGAATCACTCTCACtgttaaaa
tttaaattctCCATTAAAGATTTACTGGTGGCAATATTACGATCTATTTC
GGCAATGAAACTATCCACGTTTGCACTATGAATATCATAGCTGTTATGGA
TCTCTTCTGCCATGTTCATGAActttttttcatagaatttctTTCTCAAC
ATAAGATTCTGTGGTACTCGATCCTTGTTCTCTGATAGGAATCGTTTCCT
AACTGTGTAAGCACGCCATTTTGATTGTATCTTCAGAGCTGCCTTATTGG
AACAAATAAATGCTCCATCAAAAATCAAACGcctttcataattttcaaat
cGACAAATAGGGCAAGTTTGTTTACCAGAGTATTTCTCAAATGAATAGAT
ACACTTTTTGTGAAATGTGTGAGAGCACGAAAGGAGAATTTGTTCTCGAA
ATAAAGTATAATCTTCTTTACAAATGGGACATTTTGATTCAATATCTCCA
CGAACCATTGCTTTCCTTTTTAAAACCTCCCATTGACGCTCAGAAAGGAC
TTTCTCTTTATTCATTATCGGCGATGGTAGGAGACCATACTTTTCAGCAA
GTGACATGTTTTTCTTCGATAAAGCTGCTGCACCACTGTTACCATCAGGA
GACAGCACTCTCTCGTCgttttttcctttcaaaatatcAGTCAAGTCTTT
TTCTTTCGATGGCAAATCTGTCTTTTTTTGTTTAGCTTTCACCTCTTTCC
TTTTAACGACTGGAAGAGGATGATTGATAGTCCTTTTGGGTTTCCCGTCA
TCTAGATTTAGTCTCCGAGAGAAATGATCTTGAAAAGCAGCAGCAGAAAT
CCCCCCTGCTTTTTCACCCCGTTTTGATGGGGATCCACTTGCAAATCGAT
ACTGTTTGCTCATAATGATCGTTAtacttaaaaaacttttaagcAAAGAG
CACCTGAATTTACattcgttttaaatgagataaaCCCAAAGACTTCAAGC
AACGTGGATCGTCGTGGATCAAGGTGGATCAAAAAGATGACGATTGATCT
ggtgaaaactagtttcaatcagcaattccgccccttcaatttttttcgtt
ctttctagtCCGTGGTAATTTTCCGGGGTCAGGATTCGATTATCAGTTAG
TGCAAGTAGagaattcaattgacattggttagggtcagggttgctagtaa
cggcttgtaactgtgccgggtgcatactcggcgccttgagccccgcaggg
ttgctagtaacggctcgaatttcagtcaggcttaaaaaggggtactttta
cccatattataataacattacccccgtcttttgctaGTTTGTTATAATAT
GTTATtaattgcgtgattttgctgtgcgaCGATAGCTCAAGTGGTAAGGC
GTCGGGTTtggaaaccaaggttgcttgcatttggtggttcgaaccgAGGT
GTGGGAGTATAATTTCAGAATTTGCAAAATAGCTTCAAATagtcaaattc
agaaaaaactaagtccagaaatcagaaaaaacagagttagagatagaaaa
tagaggaaaagaggagaagggcggaattggtgattgaaacTAGATCTTTC
CGATTGGGGAGAGACT

Coding sequence (CDS) from alignment at scaffold_253:204555..206520

>TCONS_00055591 ID=TCONS_00055591|Name=TCONS_00055591|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_253:204555..206520 (Clytia hemisphaerica)
TCATTTTTGTTTTACAGTGTATTCCTTTTTCATGTACATTGATCTACATA
CTGGACATAAATGATTCGAGCATGCACTGTAGGTCTCAAATGAAGCAAGA
CATCGTTCGTGAAATAAATGAGAACAATTCAGTAGGacgattttttttga
agagTTTAACAACCCTAAACATATAGGACATTCATTATTGTCACGTCTTA
AAGCCAAGTTATGAATCTCGCTCCAAGAATCACTCTCACtgttaaaattt
aaattctCCATTAAAGATTTACTGGTGGCAATATTACGATCTATTTCGGC
AATGAAACTATCCACGTTTGCACTATGAATATCATAGCTGTTATGGATCT
CTTCTGCCATGTTCATGAActttttttcatagaatttctTTCTCAACATA
AGATTCTGTGGTACTCGATCCTTGTTCTCTGATAGGAATCGTTTCCTAAC
TGTGTAAGCACGCCATTTTGATTGTATCTTCAGAGCTGCCTTATTGGAAC
AAATAAATGCTCCATCAAAAATCAAACGcctttcataattttcaaatcGA
CAAATAGGGCAAGTTTGTTTACCAGAGTATTTCTCAAATGAATAGATACA
CTTTTTGTGAAATGTGTGAGAGCACGAAAGGAGAATTTGTTCTCGAAATA
AAGTATAATCTTCTTTACAAATGGGACATTTTGATTCAATATCTCCACGA
ACCATTGCTTTCCTTTTTAAAACCTCCCATTGACGCTCAGAAAGGACTTT
CTCTTTATTCATTATCGGCGATGGTAGGAGACCATACTTTTCAGCAAGTG
ACATGTTTTTCTTCGATAAAGCTGCTGCACCACTGTTACCATCAGGAGAC
AGCACTCTCTCGTCgttttttcctttcaaaatatcAGTCAAGTCTTTTTC
TTTCGATGGCAAATCTGTCTTTTTTTGTTTAGCTTTCACCTCTTTCCTTT
TAACGACTGGAAGAGGATGATTGATAGTCCTTTTGGGTTTCCCGTCATCT
AGATTTAGTCTCCGAGAGAAATGATCTTGAAAAGCAGCAGCAGAAATCCC
CCCTGCTTTTTCACCCCGTTTTGATGGGGATCCACTTGCAAATCGATACT
GTTTGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034963XLOC_034963Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055591-proteinTCONS_00055591-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055591-exon-scaffold_253-1491911889:204555..206520TCONS_00055591-exon-scaffold_253-1491911889:204555..206520Clytia hemisphaericaexon
TCONS_00055591-exon-scaffold_253-1510915933:204555..206520TCONS_00055591-exon-scaffold_253-1510915933:204555..206520Clytia hemisphaericaexon
TCONS_00055591-exon-scaffold_253-1575043694:204555..206520TCONS_00055591-exon-scaffold_253-1575043694:204555..206520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:204555..206520 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19856	1.32069	1.04363	1.85645	3.91667	2.7491	4.37255	3.92297	1.95311	2.64447	3.54206	2.94234	1.522	2.54877	0.373447	0.61978	0.591933	0.82321	0.724819	0.388831	0.870682	0.606307	4.99138	3.79189	4.29635	5.24834	1.1231	0.800537	2.89615	3.41171
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR000048IQ_motif_EF-hand-BS
IPR027370Znf-RING_LisH
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00055591 vs. Swiss-Prot (Human)
Match: RNF32 (RING finger protein 32 OS=Homo sapiens GN=RNF32 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.986e-59
Identity = 110/278 (39.57%), Postives = 165/278 (59.35%), Query Frame = 2 
Query: 1010 MSLAEKYGLLPSPIMNKEKVLSERQWEVLKRKAMVRGDIESKCPICKEDYTLFREQILLSCSHTFHKKCIYSFEKYSGKQTCPICRFENYERRLIFDGAFICSNKAALKIQSKWRAYTVRKRFLSENKDRVPQNLMLRKKFYEKKFMNMAEEIHNSYDIHSANVDSFIAEIDRNIATSKSLMENL----NFNSESDSWSEIHNLALRRDNNECPICLGLLNS-----------SKKIVLLNCSHLFHERCLASFETYSACSN---HLCPVCRSMYMKK 1789
            ++LA+K GL    I      LS  +WE +K++++++GD    CPICKE++ L R Q+LLSCSH FHK C+ +FEK++ K+TCP+CR   Y+ R+I DGA +   K   +IQ+ WR   VRK + +  K   P +  LRKKF+EKKF  ++  I  SY+    N++   AEID+ +A ++S+++ L          + W +I   ALRR+ +EC ICL  L++           S+++ LL+CSH+FH  CL + E +S       H CP+CRS Y KK
Sbjct:   89 LTLAQKLGL----IGPPPPPLSSDEWEKVKQRSLLQGDSVQPCPICKEEFEL-RPQVLLSCSHVFHKACLQAFEKFTNKKTCPLCRKNQYQTRVIHDGARLFRIKCVTRIQAYWRGCVVRKWYRNLRKTVPPTDAKLRKKFFEKKFTEISHRILCSYN---TNIEELFAEIDQCLAINRSVLQQLEEKCGHEITEEEWEKIQVQALRRETHECSICLAPLSAAGGQRVGAGRRSREMALLSCSHVFHHACLLALEEFSVGDRPPFHACPLCRSCYQKK 358
The following BLAST results are available for this feature:
BLAST of TCONS_00055591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF321.986e-5939.57RING finger protein 32 OS=Homo sapiens GN=RNF32 PE... [more]
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