TCONS_00055331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055331
Unique NameTCONS_00055331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1042

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055331 ID=TCONS_00055331|Name=TCONS_00055331|organism=Clytia hemisphaerica|type=transcript|length=1042bp
GGTTAGTTAACCTTGATAATCCCTCCTTAAGCTAATTTAATCTATATGTT
AACACATTACGTCACCTTACAAAACCTATAAATTGACAACACTTTCAGGA
GTTGGGAACCATAACTGATTGAACTACGAGCAAGTAAACGTCTCATTCGT
ATCATTTTTTTTAGAACAATTTAGAAAAGGAACATGAATACGTCAAATGT
CCTCAAATTATTCTTATGTGGTATTCTGATGGGAATTGTTTTATCTCGAC
CAATGCTAAGTGGACTTGGCGATCATTTACTAACAGATGGCGTTCTTTCC
ACACATGCTTGTGCTAAAACACCCAAGTTCCCTCCAACGAACGGAAAACT
GAAATGTACTGTCGACCAGTCTGATGATTCAGTTACTTGCTTAATGGACT
GTGATCAAAACTTTTCGCATGACTTTGGTGGTCAAGCAACTGGCTTCAAA
CACTTCCCAACTTTTATCTGTGATAAGAACTCAGTTTGGAGACATTTCCT
TGATCAGAAAAAAGTCATTGATACCTCCCTTCTAACGTGCCAACCACACA
AACAATaaggtattttacagaccagaatataaAGCACTTACCTTGGATAT
GGTTGCCATGGAGCATTTAATGACGTGACCATGCAAATGGCTAAaatgaa
acaattaaaaattgcGTTGACAAATACAGGAGGTGACGAGGAATCAGACT
ATTCAATTTACAACTCACTTCAAAATCCGAGACAGCAGTTTTCTTTGCAT
AAAGTTGGATTTACACACACCAATTTGTCGGCCGACTTCCAAGTAACTAA
AGGCATAATGCGACGACAACGTAAATGAGGCATCTGTGAATCTTCTCATT
TAGCTGAACTGTTGACCGATAAAACTAGTGTGTGTGAAGAAGTATTAGTA
TTTAGAAGAAATGTCCTTGTGAAATATGAATTTTTTCCATTGGCGATAGT
AGATCTTTAAGAGGATTCGTTTATTTCATCAAGTCAtgttattgtaaata
tttttatttatgtgtaacacaaacaccaaaaaacGGATGAAG
Run BLAST on NCBI

protein sequence of TCONS_00055331-protein

>TCONS_00055331-protein ID=TCONS_00055331-protein|Name=TCONS_00055331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MNTSNVLKLFLCGILMGIVLSRPMLSGLGDHLLTDGVLSTHACAKTPKFP
PTNGKLKCTVDQSDDSVTCLMDCDQNFSHDFGGQATGFKHFPTFICDKNS
VWRHFLDQKKVIDTSLLTCQPHKQ
Run BLAST on NCBI

transcript from alignment at scaffold_253:264973..266151+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055331 ID=TCONS_00055331|Name=TCONS_00055331|organism=Clytia hemisphaerica|type=transcript|length=1179bp|location=Sequence derived from alignment at scaffold_253:264973..266151+ (Clytia hemisphaerica)
GGTTAGTTAACCTTGATAATCCCTCCTTAAGCTAATTTAATCTATATGTT AACACATTACGTCACCTTACAAAACCTATAAATTGACAACACTTTCAGGA GTTGGGAACCATAACTGATTGAACTACGAGCAAGTAAACGTCTCATTCGT ATCATTTTTTTTAGAACAATTTAGAAAAGGAACATGAATACGTCAAATGT CCTCAAATTATTCTTATGTGGTATTCTGATGGGAATTGTTTTATCTCGAC CAATGCTAAGTGGTAGGTACCGCTTTacatttatttgataaaatattttg ttgtatCGACAAACGACCGATGAAGACCTAATTTTCTGGCCAGCATCGCA ATAGaccactttttttaattttttcgatatatctttttcttttccaaaGG ACTTGGCGATCATTTACTAACAGATGGCGTTCTTTCCACACATGCTTGTG CTAAAACACCCAAGTTCCCTCCAACGAACGGAAAACTGAAATGTACTGTC GACCAGTCTGATGATTCAGTTACTTGCTTAATGGACTGTGATCAAAACTT TTCGCATGACTTTGGTGGTCAAGCAACTGGCTTCAAACACTTCCCAACTT TTATCTGTGATAAGAACTCAGTTTGGAGACATTTCCTTGATCAGAAAAAA GTCATTGATACCTCCCTTCTAACGTGCCAACCACACAAACAATaaggtat tttacagaccagaatataaAGCACTTACCTTGGATATGGTTGCCATGGAG CATTTAATGACGTGACCATGCAAATGGCTAAaatgaaacaattaaaaatt gcGTTGACAAATACAGGAGGTGACGAGGAATCAGACTATTCAATTTACAA CTCACTTCAAAATCCGAGACAGCAGTTTTCTTTGCATAAAGTTGGATTTA CACACACCAATTTGTCGGCCGACTTCCAAGTAACTAAAGGCATAATGCGA CGACAACGTAAATGAGGCATCTGTGAATCTTCTCATTTAGCTGAACTGTT GACCGATAAAACTAGTGTGTGTGAAGAAGTATTAGTATTTAGAAGAAATG TCCTTGTGAAATATGAATTTTTTCCATTGGCGATAGTAGATCTTTAAGAG GATTCGTTTATTTCATCAAGTCAtgttattgtaaatatttttatttatgt gtaacacaaacaccaaaaaacGGATGAAG

Coding sequence (CDS) from alignment at scaffold_253:264973..266151+

>TCONS_00055331 ID=TCONS_00055331|Name=TCONS_00055331|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_253:264973..266151+ (Clytia hemisphaerica)
ATGAATACGTCAAATGTCCTCAAATTATTCTTATGTGGTATTCTGATGGG
AATTGTTTTATCTCGACCAATGCTAAGTGGACTTGGCGATCATTTACTAA
CAGATGGCGTTCTTTCCACACATGCTTGTGCTAAAACACCCAAGTTCCCT
CCAACGAACGGAAAACTGAAATGTACTGTCGACCAGTCTGATGATTCAGT
TACTTGCTTAATGGACTGTGATCAAAACTTTTCGCATGACTTTGGTGGTC
AAGCAACTGGCTTCAAACACTTCCCAACTTTTATCTGTGATAAGAACTCA
GTTTGGAGACATTTCCTTGATCAGAAAAAAGTCATTGATACCTCCCTTCT
AACGTGCCAACCACACAAACAATaaATGAATACGTCAAATGTCCTCAAAT
TATTCTTATGTGGTATTCTGATGGGAATTGTTTTATCTCGACCAATGCTA
AGTGGACTTGGCGATCATTTACTAACAGATGGCGTTCTTTCCACACATGC
TTGTGCTAAAACACCCAAGTTCCCTCCAACGAACGGAAAACTGAAATGTA
CTGTCGACCAGTCTGATGATTCAGTTACTTGCTTAATGGACTGTGATCAA
AACTTTTCGCATGACTTTGGTGGTCAAGCAACTGGCTTCAAACACTTCCC
AACTTTTATCTGTGATAAGAACTCAGTTTGGAGACATTTCCTTGATCAGA
AAAAAGTCATTGATACCTCCCTTCTAACGTGCCAACCACACAAACAATaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034859XLOC_034859Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055331-proteinTCONS_00055331-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055331-exon-scaffold_253-1491911889:264973..265234TCONS_00055331-exon-scaffold_253-1491911889:264973..265234Clytia hemisphaericaexon
TCONS_00055331-exon-scaffold_253-1510915933:264973..265234TCONS_00055331-exon-scaffold_253-1510915933:264973..265234Clytia hemisphaericaexon
TCONS_00055331-exon-scaffold_253-1575043694:264973..265234TCONS_00055331-exon-scaffold_253-1575043694:264973..265234Clytia hemisphaericaexon
TCONS_00055331-exon-scaffold_253-1491911889:265372..266151TCONS_00055331-exon-scaffold_253-1491911889:265372..266151Clytia hemisphaericaexon
TCONS_00055331-exon-scaffold_253-1510915933:265372..266151TCONS_00055331-exon-scaffold_253-1510915933:265372..266151Clytia hemisphaericaexon
TCONS_00055331-exon-scaffold_253-1575043694:265372..266151TCONS_00055331-exon-scaffold_253-1575043694:265372..266151Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:264973..266151 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (113.658 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0461459 0 0 0.0652536 0 2.72991 2.88714 3.00462 3.59407 1.32414 2.42304 26.8905 20.5432 1.50911 0.295966 14.8339 10.9598 113.658 90.0865 1.901 1.32813 2.94144 6.78983 0.921683 0.233795 0.148309 0.245328 0.126114 0.0961018
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
1002003004005006007008009001000Sequence
Match NameE-valueIdentityDescription
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