TCONS_00055601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055601
Unique NameTCONS_00055601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055601 ID=TCONS_00055601|Name=TCONS_00055601|organism=Clytia hemisphaerica|type=transcript|length=544bp
gtTTGGTTATTTCTTTCACTTTCTTGCCTCAAAATTGTTTAAACGTCGTT
TTTGAATGAATCTTTTCTGCAAACAAACCTAAAGTCcacattttttttat
agtttgcgaaaaatctttgatcaaaTGGGCTGAAATGGGTCGGTTTTTCA
CAAGGAATTGTTAAGTCTACTTAAGTATTTGTACCAAAGATTTTTGGAGC
TTCTTCTGTATGCATGAGACATAAAATAATGAGTTTCTCTTTGAATTGTA
GTGGTCAATCTCATTATAACAATCCGATGTTATTTCATCAGCACGTTatg
acattttttcaaaattgagcaAAAGCCTCTTATTTCTTTTGTCTTTGATA
ATGATGCTCGTCATTATGTATTTTATGCGAAGGCATTTTGTTTGAGAAaa
gctgttctttttttttaacctgTCGACAAATCACTGCGTGATATCAGAGT
GGTGCATTTAAAATGAATTTCTTTCTGAGGGAGGCGTTCATTCTTATTCT
GCATAGTGTGATTTCTCAATGCATGGATAatagttttcaataaa
Run BLAST on NCBI

transcript from alignment at scaffold_253:303944..304487

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055601 ID=TCONS_00055601|Name=TCONS_00055601|organism=Clytia hemisphaerica|type=transcript|length=544bp|location=Sequence derived from alignment at scaffold_253:303944..304487 (Clytia hemisphaerica)
tttattgaaaactatTATCCATGCATTGAGAAATCACACTATGCAGAATA
AGAATGAACGCCTCCCTCAGAAAGAAATTCATTTTAAATGCACCACTCTG
ATATCACGCAGTGATTTGTCGAcaggttaaaaaaaaagaacagcttTTCT
CAAACAAAATGCCTTCGCATAAAATACATAATGACGAGCATCATTATCAA
AGACAAAAGAAATAAGAGGCTTTtgctcaattttgaaaaaatgtcatAAC
GTGCTGATGAAATAACATCGGATTGTTATAATGAGATTGACCACTACAAT
TCAAAGAGAAACTCATTATTTTATGTCTCATGCATACAGAAGAAGCTCCA
AAAATCTTTGGTACAAATACTTAAGTAGACTTAACAATTCCTTGTGAAAA
ACCGACCCATTTCAGCCCAtttgatcaaagatttttcgcaaactataaaa
aaaatgtgGACTTTAGGTTTGTTTGCAGAAAAGATTCATTCAAAAACGAC
GTTTAAACAATTTTGAGGCAAGAAAGTGAAAGAAATAACCAAac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034973XLOC_034973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055601-exon-scaffold_253-1491911889:303944..304487TCONS_00055601-exon-scaffold_253-1491911889:303944..304487Clytia hemisphaericaexon
TCONS_00055601-exon-scaffold_253-1510915933:303944..304487TCONS_00055601-exon-scaffold_253-1510915933:303944..304487Clytia hemisphaericaexon
TCONS_00055601-exon-scaffold_253-1575043694:303944..304487TCONS_00055601-exon-scaffold_253-1575043694:303944..304487Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:303944..304487 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.317711	0.206546	0	0	0	0.112856	0.408468	0.892273	0	0.110542	0	0.0705313	0	0.365728	0.0601356	0	0	0.0814865	0.675468	0	0.409575	0.449497	0.121427	0	0	0	0.435645	0.154977	0.23509	0.239519
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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