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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055615 ID=TCONS_00055615|Name=TCONS_00055615|organism=Clytia hemisphaerica|type=transcript|length=837bp
ttCAGCGACTAAGGACTGACAAAATTCGCGCTCCTAATTAATGATGCTAT
TTAGTCTTCTGCGAGAAAAGCTTAACAGGTAGAGAGCTCAAGTCGATGAA
GTCGTTCACTTGGTTTTCATATGCGAAAATAAATTTGCTTCTCGTCACCT
CGTTCATCCAATATTTGATGATTTTCCAACACCCCCAAAAGATATACGGA
TAGTTGATGATAAAGGCGGTCGCAATGCGTTCAGGAAAATACGTTTTCAA
TACATGTAGCAATTCCTTGACAAATTTATAATCCATGTTTGAAAGTCCGA
ATccttttaaatcaaatataagaACCATTCGTTTGTCGAAAGCCCTTTCG
TCAGCCTTATTGGAAATACTTTCCAAACGATGCAAACAATACTTGTACAG
TGTGTCGTAATCGCCATGGTGTTTATCGTGGTTTCGAACCGTGATTAAAA
GTATGGGGCGCCCACAACGATCGTAATGACCGTCGAAAATTCGATCACGA
TCTCTTTCTTGTTCCTTCTTCATCTTTTCATCAGCCGATATATCGATATC
GGCAATTTGGTCGACATTATTCTGTTGTCTCCAATTACAATATTCTTCTA
ACCCGTTCAAAGCGTCTTTGACATTTTCGAAAGCCTTCAGGAATCGAATA
AGAGAATCTTCGTTTAGCCAGCGTTCTTTCCATCCTTCGTTCTCTGATAA
TTTCTTCGCCACCAACCCTCGTAATTCTTCTAGctcttcatttttatatt
tcGGACGCGTGATGTGATATTTTTCGGACAACGTTCGATCATTTTCCACA
AAATTATCTTGCATCGCTGAAAGacttttaattcttt Run BLAST on NCBI protein sequence of TCONS_00055615-protein >TCONS_00055615-protein ID=TCONS_00055615-protein|Name=TCONS_00055615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
RIKSLSAMQDNFVENDRTLSEKYHITRPKYKNEELEELRGLVAKKLSENE
GWKERWLNEDSLIRFLKAFENVKDALNGLEEYCNWRQQNNVDQIADIDIS
ADEKMKKEQERDRDRIFDGHYDRCGRPILLITVRNHDKHHGDYDTLYKYC
LHRLESISNKADERAFDKRMVLIFDLKGFGLSNMDYKFVKELLHVLKTYF
PERIATAFIINYPYIFWGCWKIIKYWMNEVTRSKFIFAYENQVNDFIDLS
SLPVKLFSQKTK Run BLAST on NCBI transcript from alignment at scaffold_253:549589..550425 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055615 ID=TCONS_00055615|Name=TCONS_00055615|organism=Clytia hemisphaerica|type=transcript|length=837bp|location=Sequence derived from alignment at scaffold_253:549589..550425 (Clytia hemisphaerica)
aaagaattaaaagtCTTTCAGCGATGCAAGATAATTTTGTGGAAAATGAT
CGAACGTTGTCCGAAAAATATCACATCACGCGTCCgaaatataaaaatga
agagCTAGAAGAATTACGAGGGTTGGTGGCGAAGAAATTATCAGAGAACG
AAGGATGGAAAGAACGCTGGCTAAACGAAGATTCTCTTATTCGATTCCTG
AAGGCTTTCGAAAATGTCAAAGACGCTTTGAACGGGTTAGAAGAATATTG
TAATTGGAGACAACAGAATAATGTCGACCAAATTGCCGATATCGATATAT
CGGCTGATGAAAAGATGAAGAAGGAACAAGAAAGAGATCGTGATCGAATT
TTCGACGGTCATTACGATCGTTGTGGGCGCCCCATACTTTTAATCACGGT
TCGAAACCACGATAAACACCATGGCGATTACGACACACTGTACAAGTATT
GTTTGCATCGTTTGGAAAGTATTTCCAATAAGGCTGACGAAAGGGCTTTC
GACAAACGAATGGTtcttatatttgatttaaaaggATTCGGACTTTCAAA
CATGGATTATAAATTTGTCAAGGAATTGCTACATGTATTGAAAACGTATT
TTCCTGAACGCATTGCGACCGCCTTTATCATCAACTATCCGTATATCTTT
TGGGGGTGTTGGAAAATCATCAAATATTGGATGAACGAGGTGACGAGAAG
CAAATTTATTTTCGCATATGAAAACCAAGTGAACGACTTCATCGACTTGA
GCTCTCTACCTGTTAAGCTTTTCTCGCAGAAGACTAAATAGCATCATTAA
TTAGGAGCGCGAATTTTGTCAGTCCTTAGTCGCTGaa Coding sequence (CDS) from alignment at scaffold_253:549589..550425 >TCONS_00055615 ID=TCONS_00055615|Name=TCONS_00055615|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_253:549589..550425 (Clytia hemisphaerica)
agaattaaaagtCTTTCAGCGATGCAAGATAATTTTGTGGAAAATGATCG
AACGTTGTCCGAAAAATATCACATCACGCGTCCgaaatataaaaatgaag
agCTAGAAGAATTACGAGGGTTGGTGGCGAAGAAATTATCAGAGAACGAA
GGATGGAAAGAACGCTGGCTAAACGAAGATTCTCTTATTCGATTCCTGAA
GGCTTTCGAAAATGTCAAAGACGCTTTGAACGGGTTAGAAGAATATTGTA
ATTGGAGACAACAGAATAATGTCGACCAAATTGCCGATATCGATATATCG
GCTGATGAAAAGATGAAGAAGGAACAAGAAAGAGATCGTGATCGAATTTT
CGACGGTCATTACGATCGTTGTGGGCGCCCCATACTTTTAATCACGGTTC
GAAACCACGATAAACACCATGGCGATTACGACACACTGTACAAGTATTGT
TTGCATCGTTTGGAAAGTATTTCCAATAAGGCTGACGAAAGGGCTTTCGA
CAAACGAATGGTtcttatatttgatttaaaaggATTCGGACTTTCAAACA
TGGATTATAAATTTGTCAAGGAATTGCTACATGTATTGAAAACGTATTTT
CCTGAACGCATTGCGACCGCCTTTATCATCAACTATCCGTATATCTTTTG
GGGGTGTTGGAAAATCATCAAATATTGGATGAACGAGGTGACGAGAAGCA
AATTTATTTTCGCATATGAAAACCAAGTGAACGACTTCATCGACTTGAGC
TCTCTACCTGTTAAGCTTTTCTCGCAGAAGACTAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055615-exon-scaffold_253-1491911889:549589..550425 | TCONS_00055615-exon-scaffold_253-1491911889:549589..550425 | Clytia hemisphaerica | exon |
| TCONS_00055615-exon-scaffold_253-1510915933:549589..550425 | TCONS_00055615-exon-scaffold_253-1510915933:549589..550425 | Clytia hemisphaerica | exon |
| TCONS_00055615-exon-scaffold_253-1575043694:549589..550425 | TCONS_00055615-exon-scaffold_253-1575043694:549589..550425 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:549589..550425 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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