TCONS_00055526 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055526
Unique NameTCONS_00055526
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055526 ID=TCONS_00055526|Name=TCONS_00055526|organism=Clytia hemisphaerica|type=transcript|length=2448bp
gttttagatAAGATCTAAATTCATGAAATTTCTCTACTGGACTTGCATTA
CTTTGTTCATTATCATCACAGTCTAAAAGCCAAAATGTGGGGCAAATTGA
ATAAGATGGTCACTGGAGACCAGGAAAAAATCCAGAGCTTGGAAGAAGCA
CTTGAGATGGAGCAGCAACGTAACAAAATTGCTCAAGATCAATTTAGAAA
GCTTttgaaagagaaagaaaaacagaTCCAGAAGTTACAAGTTCAAGGTG
GTGGAGGTGGAGCAGGTGCTGCAAGTAATGGTGCTACTGATGACCGTGAA
GAGATCAAAGAAGAATTGGGACGTTTGCAAAGAAAAATGGAAGAATATCA
AATGCTTATCCAgcaaaaagatgaaaatattcAAGTACTCATGCAACAAA
CACGAGAAGCAGAAGAGCTGAAAGAAAAAGTAGAAGCCCAGGAAAGAATC
AATTCTGAAAAGCTGATGTTCGAGCTGGCTGGAAGAATTGAATCTCATGA
AAAAATATCTGTCAAACTAGAGGAAATGAAACAAGTTTTGGAACAAAGAG
ATCTTACTGTTCTAAACATTGCTGATGATGTTGCTGCCAAAGACAAGCTT
GTAAAAACAAAGGATGAGGCAATTCGTCAGTTGAAAAAGCTGATGCAAGG
TGATGAAGCTGTAGAGGAACTTAAATCAATGATTTTATCACAGGAAGAAA
ATGAGTGTGAAATCATTACTCTTCAACAGACCATTGCTTCTCTTGATAGA
GAAAAGAAATATCTTGAGATGCGACTTTTAAATCCTGATGGAGAAGAAAA
TGAGACATTTTCATCCAATGAACTGAAAGAAAGAGATTCACTGATTGAGA
ATCTACAGAAGGAGAAGAAAGCCGTTGAAAACGAACTGGAGTCTTTAAAG
AAACACAGTGGAAGTGCTGAAAAACTTGAAGAGCAGGATAAGGTCATTGC
TGATCTACAAGACTTGGTCAACAAACTCGAAGGCGAATCAACATCATTGA
ATACCAAAGTTGAAGAagctgaaaaatctttttctgagCTTGAGGCTGTT
CTCAAGGCTTCTGAAGAGCTTTGTGAGAATCTAAAAGCTGAGAAAAATGA
TCTTCAAGAGGCATTGGAGTCAAAATCCAAGGAGCTTGAAAATTCTGTAG
AgaatttgcagaaaaaagaGCAAGAGTTGAGCCACAAGGATTCAGATTTG
AAAGCAAAAGAAGAAGAATCTAAGAAACTTGGGGAAAAATGTGAAGAATT
GACCAGGACAAATGACTTACTTAAAAAAGAAGTTGATAAATTGGATAAAC
TGGATGAAACAcagGAGGAGAACGAAAAAGTCAAAAGCCAGTTATCAGAA
AAAGATGAATTAATCCAACAAAAAGACGAACAAATTGAAGAACTCCAAAC
AGCTTTAACTCGAAGTGAAGAGGACAAGGAAGACTTGGCACAGCGACAGG
CTTTGGACATTGAAGAACTACAAAACGCTATGGATGTTATGGAAACTGAA
AAAGCAAATGCAAATGAAGACTTCAAAGATATACAAGATCAAATGGAAGC
TTTGAGAAGCCAACTAGCAAATAACGATGAAAGTAGTGGTGTTCTTGTGA
AACATTTAGAAGAAAAGGATGCTGAAATAAGTAATTTGAAGAAAGATTCC
GCAGAGCTTAGGAAACAAAAAGAAACTCTTGAGAAACACGTagaagaaca
aaaacaaaagcttTCCTTACTGAGACAAGAAATGGATTTGAAGGATACTG
ATTCAAAAGTTGTAAGTGAGCAGTTGTCTCAAAACGCTGCAGAAATTGAT
AAACTCAACTCGTCAATTACCACTGTGGAAAACGAGAAAAATGAGAGCat
acaaaatctacaaaaagagAATGAATCCTTAGAGAATAATATTATAACAT
TAGCAGAAAATGTTAAAACTCTTGAAAGCAATATTGAAGCTCTTGAAAGT
GAAAAgcaatcttttacaaaatctatAGAAACTAAGGATACtgaaatttc
ttctttaaaatcgAACATTGAATCACTTGAAATGGACAATAATACCACAA
AAGAAGCGCTCAATACTTCCCATAAAGAACTGTCAGAGATCAGAAAACAA
ATGGAATCAAAGGATGGTGATAGTAACATTCTAAGTAAACAATTagagga
aaaagaaaacaaactttCAGAACTTACAAAAGAGAACGATGTTTTGAGTA
AAACAGTGAGTGACTTAGAAGCCACTATAATCAAACTAGACGAAGATATT
GTTGCATCTCAAAAAGCAGCAGAAACCTCTCTCCATCGGCAAAAAGAACT
AGAAGTTTCACTGAAGACATTGTCTGACGAGAAGGATGGCTTCGAAAGCA
AATTGCAAGAGATGGGTCAAGCACTGGATGATTTCGTTCAATCAACTGAA
ACGCGAATTAGAAGCAGTAATGGTAGTGATGTTGAATCGAATGCATGT
Run BLAST on NCBI

transcript from alignment at scaffold_253:606691..611604-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055526 ID=TCONS_00055526|Name=TCONS_00055526|organism=Clytia hemisphaerica|type=transcript|length=4914bp|location=Sequence derived from alignment at scaffold_253:606691..611604- (Clytia hemisphaerica)
GTTTTAGATAAGATCTAAATTCATGAAATTTCTCTACTGGACTTGCATTA
CTTTGTTCATTATCATCACAGTCTAAAAGCCAAAATGTGGGGCAAATTGA
ATAAGATGGTCACTGGAGACCAGGAAAAAATCCAGAGCTTGGAAGAAGCA
CTTGAGATGGAGCAGCAACGTAACAAAATTGCTCAAGATCAATTTAGAAA
GCTTTTGAAAGAGAAAGAAAAACAGATCCAGAAGTTACAAGTTCAAGGTG
GTGGAGGTGGAGCAGGTGCTGCAAGTAATGGTGCTACTGATGTAAGCGAT
ATGTATTTTTTCAAAAACAATAATTCAACTGCCAAATTTTCTCTATTTAG
AACTGCCCTGTAAAGAATACTGGACTTAATCCTAAGATAAAAAACTTGAC
ACGCAATAAGTGCTTCTTTGAATTCCATAGATTTACTAGCAATAATCTGN
CTGGACTTAATCCTAAGATAAAGAACTTGACACGCAATAAGTGCTTCTTT
GAATTCCATAGATTTACTAGCAATAATCTGAAGTTCAGTTGGAGGTTTAT
CTTAGAAGCTTGTTAAAAGGAAAATATGGCTATGAAAAGAAACTTGTGAA
ATTTTTAGGTATTAAAAAGTCACAAATATCATCGCTGTTAGTAAGAAAAG
CTGTGCTCTTTGTTTAAACTCAGGTCTGTGATTTAAAGAAATATTTTGAA
TTTTATAAAGGACGCCACACCTGAAAACTAGATGATAGAAATTACTTTTG
TCAAATTGTAGGACCGTGAAGAGATCAAAGAAGAATTGGGACGTTTGCAA
AGAAAAATGGAAGAATATCAAATGCTTATCCAGCAAAAAGATGAAAATAT
TCAAGTACTCATGCAACAAACACGAGAAGCAGAAGAGCTGAAAGAAAAAG
TAGAAGCCCAGGAAAGAATCAATTCTGAAAAGCTGATGTTCGAGCTGGCT
GGAAGAATTGAATCTCATGAAAAAATATCTGTCAAACTAGAGGAAATGAA
ACAAGTTTTGGAACAAAGAGATCTTACTGTTCTAAACATTGCTGATGATG
TACGTTGCTGAATTTATTTTAATTGGAAATTTCACCAGCTTTCACTTGAA
TTAATCAAGACTCATGCTTATCTCTTTATTGGTTTGAGAGGTTAAAAAAC
ATTGTATTAAGAATGCAAACTTCTCTCTTTCAGGTTGCTGCCAAAGACAA
GCTTGTAAAAACAAAGGATGAGGCAATTCGTCAGTTGAAAAAGCTGATGC
AAGGTGATGAAGCTGTAGAGGAACTTAAATCAATGATTTTATCACAGGAA
GAAAATGAGTGTGAAATCATTACTCTTCAACAGACCATTGCTTCTCTTGA
TAGAGAAAAGAAATATCTTGAGATGCGACTTTTAAATCCTGATGGAGAAG
AAAATGAGGTACTTTTCCTTTCTTTGGCAATATCAATTATTAAACCTGTG
TTTAGTAGCAATGCCTGAACTAATCTGGTGGTTATTAACTTGTTTGTTAA
CTTGTTTTTCCCCAAAGCATTAATGGCAGTTTTTAATTTGTACATAAAAT
TGATGCCTCTTCAATATAGCAATATATAATATATTTTCAAAGTTTATTTC
AAAGTAAAAGCTTTTCGGCTATGCAACCATCAGTACAAACGTAGAATATG
TTTTGAATTCTATGTTTGTACTGACGATGACGTAGCCAATAAGCTTTTAC
TTTGAAATCAATTTTAATAAATTTTTGTTTTTTAATAAAACTATGGCGAA
TAGATTTATAACAATATATTTTCAATCAATGAACCATAAAACCAGACGCA
TTGGTAAAAAAGAAATCTTTCTCTTAATGAAGTATGTTTTCGATATATAA
TCCTTCTTGTTTTATAGCCTGTCATTATGTAAAAAGCAATGGCAAAATGC
ATATCATAAAAACTTGTACAAGGTGTACCAAAAGTCAACCCACTTTTAAA
AAATCTTTCCTCCTTTTAGACATTTTCATCCAATGAACTGAAAGAAAGAG
ATTCACTGATTGAGAATCTACAGAAGGAGAAGAAAGCCGTTGAAAACGAA
CTGGAGTCTTTAAAGAAACACAGTGGAAGTGCTGAAAAACTTGAAGAGCA
GGTATTCTACTTCATTATTATCATTGGCTACAGTTTGATTTTGTAACTGG
TCACTTCTCTCTCTCTTCTTCCAGATGATGAATTATTGACTTTTTATCAA
CCATTACTTTTGAATTCCTTCCTTTAGGATAAGGTCATTGCTGATCTACA
AGACTTGGTCAACAAACTCGAAGGCGAATCAACATCATTGAATACCAAAG
TTGAAGAAGCTGAAAAATCTTTTTCTGAGCTTGAGGCTGTTCTCAAGGCT
TCTGAAGAGCTTTGTGAGAATCTAAAAGCTGAGAAAAATGATCTTCAAGA
GGTAATCTTACAAACATCTTTAAATTTTGTGAAGCTAAAAAGCTTTGATT
GCAAGTGAGACACAGATGGGCCAGACCAAGGGGATATTTTGTGTTAGTCA
CAGTCAGTTGAAAAGGTGGGGAATTTAATAATGGGCATCTTTAATCATGG
GCATCTTTAAAAAAACTAAATCCAAAGTTCTCTTATATTTATTTGCATTT
ACTTTAGCCTGAACNAAAAGCAATGGCAAAATGCATATCATAAAAACTTG
TACAAGGTGTACCAAAAGTCAACCCACTTTTAAAAAATCTTTCCTCCTTT
TAGACATTTTCATCCAATGAACTGAAAGAAAGAGATTCACTGATTGAGAA
TCTACAGAAGGAGAAGAAAGCCGTTGAAAACGAACTGGAGTCTTTAAAGA
AACACAGTGGAAGTGCTGAAAAACTTGAAGAGCAGGTATTCTACTTCATT
ATTATCATTGGCTACAGTTTGATTTTGTAACTGGTCACTTCTCTCTCTCT
TCTTCCAGATGATGAATTATTGACTTTTTATCAACCATTACTTTTGAATT
CCTTCCTTTAGGATAAGGTCATTGCTGATCTACAAGACTTGGTCAACAAA
CTCGAAGGCGAATCAACATCATTGAATACCAAAGTTGAAGAAGCTGAAAA
ATCTTTTTCTGAGCTTGAGGCTGTTCTCAAGGCTTCTGAAGAGCTTTGTG
AGAATCTAAAAGCTGAGAAAAATGATCTTCAAGAGGTAATCTTACAAACA
TCTTTAAATTTTGTGAAGCTAAAAAGCTTTGATTGCAAGTGAGACACAGA
TGGGCCAGACCAAGGGTATATTTTGTGTAAGTCACAGTCAGTTGAAAAGG
TGGGGAATTTAATAATGGGCATCTTTAATCATGGGCATCTTTAAAAAAAC
TAAACCCAAAGTTCTCTTATATTTATTTGCATTTACTTTAGCCTGAATTT
TCTAAGAGGAATAACTCATAATTGAATTTCTATTTTCAAGGCATTGGAGT
CAAAATCCAAGGAGCTTGAAAATTCTGTAGAGAATTTGCAGAAAAAAGAG
CAAGAGTTGAGCCACAAGGATTCAGATTTGAAAGCAAAAGAAGAAGAATC
TAAGAAACTTGGGGAAAAATGTGAAGAATTGACCAGGACAAATGACTTAC
TTAAAAAAGAAGTTGATAAATTGGATAAACTGGATGAAACACAGGTTTGT
TTTTCTTCTACTTAAGGAAAGAACCTCTCCAAGGTTTTGCTTATTAAACG
ATACAATTTTCATAATTTTTACTAAAGACTAAAATTGGTTCTAAATAAAT
GTTGTTTTCTAGAAAATGTACATTTATGATTTCTTCAAAATATGAGATAA
ATTTTTTTTTCTTTGAAATTTTCATTATAGGAGGAGAACGAAAAAGTCAA
AAGCCAGTTATCAGAAAAAGATGAATTAATCCAACAAAAAGACGAACAAA
TTGAAGAACTCCAAACAGCTTTAACTCGAAGTGAAGAGGACAAGGAAGAC
TTGGCACAGCGACAGGCTTTGGACATTGAAGAACTACAAAACGCTATGGA
TGTTATGGAAACTGAAAAAGCAAATGCAAATGAAGACTTCAAAGATATAC
AAGATCAAATGGAAGCTTTGAGAAGCCAACTAGCAAATAACGATGAAAGT
AGTGGTGTTCTTGTGAAACATTTAGAAGAAAAGGATGCTGAAATAAGTAA
TTTGAAGAAAGATTCCGCAGAGCTTAGGAAACAAAAAGAAACTCTTGAGA
AACACGTAGAAGAACAAAAACAAAAGCTTTCCTTACTGAGACAAGAAATG
GATTTGAAGGATACTGATTCAAAAGTTGTAAGTGAGCAGTTGTCTCAAAA
CGCTGCAGAAATTGATAAACTCAACTCGTCAATTACCACTGTGGAAAACG
AGAAAAATGAGAGCATACAAAATCTACAAAAAGAGAATGAATCCTTAGAG
AATAATATTATAACATTAGCAGAAAATGTTAAAACTCTTGAAAGCAATAT
TGAAGCTCTTGAAAGTGAAAAGCAATCTTTTACAAAATCTATAGAAACTA
AGGATACTGAAATTTCTTCTTTAAAATCGAACATTGAATCACTTGAAATG
GACAATAATACCACAAAAGAAGCGCTCAATACTTCCCATAAAGAACTGTC
AGAGATCAGAAAACAAATGGAATCAAAGGATGGTGATAGTAACATTCTAA
GTAAACAATTAGAGGAAAAAGAAAACAAACTTTCAGAACTTACAAAAGAG
AACGATGTTTTGAGTAAAACAGTGAGTGACTTAGAAGCCACTATAATCAA
ACTAGACGAAGATATTGTTGCATCTCAAAAAGCAGCAGAAACCTCTCTCC
ATCGGCAAAAAGAACTAGAAGTTTCACTGAAGACATTGTCTGACGAGAAG
GATGGCTTCGAAAGCAAATTGCAAGAGATGGGTCAAGCACTGGATGATTT
CGTTCAATCAACTGAAACGCGAATTAGAAGCAGTAATGGTAGTGATGTTG
AATCGAATGCATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034926XLOC_034926Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055526-exon-scaffold_253-1575043694:611314..611604TCONS_00055526-exon-scaffold_253-1575043694:611314..611604Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1575043694:610556..610843TCONS_00055526-exon-scaffold_253-1575043694:610556..610843Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1575043694:610197..610421TCONS_00055526-exon-scaffold_253-1575043694:610197..610421Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1575043694:609504..609635TCONS_00055526-exon-scaffold_253-1575043694:609504..609635Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1575043694:608470..608643TCONS_00055526-exon-scaffold_253-1575043694:608470..608643Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1575043694:608011..608214TCONS_00055526-exon-scaffold_253-1575043694:608011..608214Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1575043694:606691..607824TCONS_00055526-exon-scaffold_253-1575043694:606691..607824Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1510915933:611314..611604TCONS_00055526-exon-scaffold_253-1510915933:611314..611604Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1510915933:610556..610843TCONS_00055526-exon-scaffold_253-1510915933:610556..610843Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1510915933:610197..610421TCONS_00055526-exon-scaffold_253-1510915933:610197..610421Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1510915933:609504..609635TCONS_00055526-exon-scaffold_253-1510915933:609504..609635Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1510915933:608470..608643TCONS_00055526-exon-scaffold_253-1510915933:608470..608643Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1510915933:608011..608214TCONS_00055526-exon-scaffold_253-1510915933:608011..608214Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1510915933:606691..607824TCONS_00055526-exon-scaffold_253-1510915933:606691..607824Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1491911889:611314..611604TCONS_00055526-exon-scaffold_253-1491911889:611314..611604Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1491911889:610556..610843TCONS_00055526-exon-scaffold_253-1491911889:610556..610843Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1491911889:610197..610421TCONS_00055526-exon-scaffold_253-1491911889:610197..610421Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1491911889:609504..609635TCONS_00055526-exon-scaffold_253-1491911889:609504..609635Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1491911889:608470..608643TCONS_00055526-exon-scaffold_253-1491911889:608470..608643Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1491911889:608011..608214TCONS_00055526-exon-scaffold_253-1491911889:608011..608214Clytia hemisphaericaexon
TCONS_00055526-exon-scaffold_253-1491911889:606691..607824TCONS_00055526-exon-scaffold_253-1491911889:606691..607824Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:606691..611604 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0475361	0.0772586	0.101665	0.0702096	1.08266	0.484052	0.570408	1.02987	0.191387	0.259116	0.171237	0.172364	0.14051	0.145921	0.170953	0.218863	0.297376	0.211329	0.0842198	0.26439	0.28087	0.276488	0.0726719	0.132139	0.561411	0.673122	0.101393	0.0618341	0.175871	0.107511
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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