TCONS_00055621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055621
Unique NameTCONS_00055621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055621 ID=TCONS_00055621|Name=TCONS_00055621|organism=Clytia hemisphaerica|type=transcript|length=566bp
TTGTCACGTGATAAAATTTCTAAGAATCTTGAAAGGCGGCAAACGCCATT
AATCACACCCACCGCCCCGTACAAGTTCCACGTTAATTCAAGATGGACGC
CGCTTTCTTTGACATAACAAACATTTACAACAATTATATTGATATGTTTT
GGTTCGGTACTACGGTAAATTTTAGTGATAGTGTATATTTTGAGATTTAA
TTATAATCCTGAAAATATTTATACGCTTAAAAGTCATTTCAGTGATAGTT
CATATGTCAAATTCCAGATGCAAGGAGGGGGAGAGAGCGAGaggaagaaa
ataaaagaaagtgaaCATTCTATCTGGTGGTTTGGATTTTTGCATTTGCA
ACTTTTATTTCATGTAGCATAACATTTATCATTATGTTGATTTCTCAAAG
ATTGtgaaaaggttgaaaatttcaATCCTAGGGATAACTTGCAAACATAA
TAATAGAAGTATatataaaaacctttcttttgcttttttgtGCTCAAAAT
GAGTAGATATTTGTCTCTGTTTGTGAAATGGTATGGTGTTTTTTGTTAca
ataaaacattaaaatt
Run BLAST on NCBI

transcript from alignment at scaffold_253:615132..615697

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055621 ID=TCONS_00055621|Name=TCONS_00055621|organism=Clytia hemisphaerica|type=transcript|length=566bp|location=Sequence derived from alignment at scaffold_253:615132..615697 (Clytia hemisphaerica)
aattttaatgttttattgTAACAAAAAACACCATACCATTTCACAAACAG
AGACAAATATCTACTCATTTTGAGCacaaaaaagcaaaagaaaggttttt
atatATACTTCTATTATTATGTTTGCAAGTTATCCCTAGGATtgaaattt
tcaaccttttcaCAATCTTTGAGAAATCAACATAATGATAAATGTTATGC
TACATGAAATAAAAGTTGCAAATGCAAAAATCCAAACCACCAGATAGAAT
GttcactttcttttattttcttcctCTCGCTCTCTCCCCCTCCTTGCATC
TGGAATTTGACATATGAACTATCACTGAAATGACTTTTAAGCGTATAAAT
ATTTTCAGGATTATAATTAAATCTCAAAATATACACTATCACTAAAATTT
ACCGTAGTACCGAACCAAAACATATCAATATAATTGTTGTAAATGTTTGT
TATGTCAAAGAAAGCGGCGTCCATCTTGAATTAACGTGGAACTTGTACGG
GGCGGTGGGTGTGATTAATGGCGTTTGCCGCCTTTCAAGATTCTTAGAAA
TTTTATCACGTGACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034993XLOC_034993Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055621-exon-scaffold_253-1491911889:615132..615697TCONS_00055621-exon-scaffold_253-1491911889:615132..615697Clytia hemisphaericaexon
TCONS_00055621-exon-scaffold_253-1510915933:615132..615697TCONS_00055621-exon-scaffold_253-1510915933:615132..615697Clytia hemisphaericaexon
TCONS_00055621-exon-scaffold_253-1575043694:615132..615697TCONS_00055621-exon-scaffold_253-1575043694:615132..615697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:615132..615697 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.298132	0.387635	0.562601	0.660501	0.804096	0.635408	1.40542	2.15302	1.25615	0.829838	0.704779	1.12514	0.859206	1.37276	0.959306	1.81673	2.08886	2.14102	0.633842	1.216	2.01776	3.09317	0.911554	1.13951	0.320091	0.571348	1.2264	0	0.88241	0.899036
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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