TCONS_00055354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055354
Unique NameTCONS_00055354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055354 ID=TCONS_00055354|Name=TCONS_00055354|organism=Clytia hemisphaerica|type=transcript|length=1786bp
tactaattcacgagtttccgttgttttttttggaatctaaaatatgtatc
acgaaatgaaacgtttttcgacctcagccgcgcgactaaatGGCGAAAGA
AAAATTGTCTGCAAAATTATAAAATTCACAACCAATGTGTTGCCTCATTT
CTAATAATATTGCATAGTTTAGTTACTCATGGAGGAAAAAAGCGGAGAAA
AAGTCAAAGTCATCTGTCTTGGAGACAGTGCCGTTGGTAAATCAAAATTG
GTGGAACGATTTCTGATGGATGGATACAAACCACAACAGTTATCAACCTA
CGCTCTTACTCTGTTCAAATATTTCACGCAAATAGAAGGCAGAGATGTTA
ATGTTGaattttgggATACGGCAGGGCAGGAACGATTTAGCAGTATGCAC
CCATCTTATTACCATTCTGCACATGCTTGTATTTTGGTATTTGATGTTAC
AAGGAAACCAACATACAAAAACTTAGCGAATTGGTATAAAGAATTACGTG
AATACAGAGAAGACATACCTTGTATACTAGTCGCAAACAAGATAGACGTT
GACTACAGTGTAACAAAGAAGAGTTTTAATTTTGCAAAGAAATATCATAT
GCCATTTTATTTTGTATCCGCTTCAGATGGAACCAACGTTGTCAAGGTAT
TTCGAGAAGCTATACGATTAGGTTTGGATTATAAAGATAACTCGACAGAC
TTTGTTGATGAAGTTTTGAAAGAATTAGAGCATATGGAGGAAACAGACAA
AAGTTTGGCTTCTTCAACTCCTTCATCGATATCACCCACAAGCTCCAAAG
ATGATCCATGATTCAAGATGGTTTATTTCTCATACAGCGGAAAAAGTTTA
GGGAAGAAAACTTAACTGTATGATGTCTTTTGTTTTGGAATGTTCACTTT
TGTTTTGTATTCTTGACAAGAGTATGGCTTTGTACTCACTCGCACGATAC
GTTCTTTTTTCATTTGCGTGGTGATCTTtagtcattttcatttcaatgtt
ttttaaaataacttttagtcttttttccttttgttaaatcaaggaaaaac
ttaaaatgaaattgaattttttttacctaatAATATTTTAGATATGTTTT
TTATTCGATTGATTGCTTCTGTTTTAACAGCGCAACGTAAGGCAAGTAGA
TTTCAGTTGAGGCTAGGATATTCTTCTTCGTCCatgattttcagactttg
aaTTTGATCTCGATGTATCCTTGCTGTACTCAGCTTACTGACTACTTGGC
TCAAAATGGGGTTCAAATCAGCATTTTCGTTGCCAATGAAGCCTGACACG
ATAGGTTTACTTTTTATTCGACAATACATGCTATTATTAATTTCTGGACC
ATCAATCTTCTTTCATTTCTTGTCCAAACTTTTTTCAACAATAACTAGAA
AAAGATTTTGACCTGTCTTTGCTTGCCTCTTATCATTGCCTTTTGTTGAT
ACTTTTATTGGTTACCGCACGATATGACAAAAATTTATCAAGAATCTGTG
GTTAGTTGTGATATACTTGCTGGTAGTCAAATTATATGTTAATATATTGC
AATGATGTGTGTTATTgtagattttgcagattgaatttttttaacgcgtt
catcatcatttttaaaaggaaaatataaaataagGAATGTCAttgtaaaa
cattattttaagtttagaaatatataaattataactttttatttacCTTG
TAAAATTTGACCTCCATTTTTCTGCCTATAGAAATTGAGTATTTGATTTT
TCTCAATAGTCGACTTTTAAAACTTGTATAAGCCAG
Run BLAST on NCBI

protein sequence of TCONS_00055354-protein

>TCONS_00055354-protein ID=TCONS_00055354-protein|Name=TCONS_00055354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MEEKSGEKVKVICLGDSAVGKSKLVERFLMDGYKPQQLSTYALTLFKYFT
QIEGRDVNVEFWDTAGQERFSSMHPSYYHSAHACILVFDVTRKPTYKNLA
NWYKELREYREDIPCILVANKIDVDYSVTKKSFNFAKKYHMPFYFVSASD
GTNVVKVFREAIRLGLDYKDNSTDFVDEVLKELEHMEETDKSLASSTPSS
ISPTSSKDDP
Run BLAST on NCBI

transcript from alignment at scaffold_253:616747..631217+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055354 ID=TCONS_00055354|Name=TCONS_00055354|organism=Clytia hemisphaerica|type=transcript|length=14471bp|location=Sequence derived from alignment at scaffold_253:616747..631217+ (Clytia hemisphaerica)
tactaattcacgagtttccgttgttttttttggaatctaaaatatgtatc
acgaaatgaaacgtttttcgacctcagccgcgcgactaaatGGCGAAAGA
AAAATTGTCTGCAAAATTATAAAATTCACAACCAATGTGTTGCCTCATTT
CTAATAATATTGCATAGTTTAGTTACTCATGGAGGAAAAAAGCGGAGAAA
AAGTCAAAGTCATCTGTCTTGGAGACAGTGCCGTTGGTAAATCAAAGtaa
gtatatatttttcatataaaattaaaagaaagagactttaagttttatta
ttgtttcagaactttaagtttcatgccgCCCGCATGGACGACAATCATCA
GCTATTTTTCATATATAATCAAGGGGATGTTCGACTGCTGAACCCTATTG
AACCAATTTTCttaatcaaaacattgaacttAATCAAAAGATAGATGTTT
GATTATTACCAAACCAGATCGAACTTTAACGCAGAGATATattgattagt
tcgattagttcgatcaaaaataaaatacagtTCGACGTTGTTCGATGTAT
GTTTGAGTTGTTGGACGAGTGTTATGTTGGTGCTTTTCTGGAATCATTCA
GCTATTTTTCTCAGGTATAATAGCAAAGATATTGCAAAAATGGCCTAGAA
AAAAGTTAGATGCTTATTGAATGAATGTCTAACTACAATCAAATCTATCA
GTCTAAGCTTCAAACTCCTTATCAGGATAAGAAACttggctagtcttacc
tcttttatctttccctttacaacaatatcgtcaactgctctaacttgggg
gacgattggtcaaaacatgggactgttgatatctggcctgtattttcact
tactgttaaatctctttgacaacaaatttgttttgataactccaccaagt
ttatcaatcatactttctgtcataacatgtcatgataactttcaatggta
gcgcgtcctttttaacttttttgttttcattcaaaatgactcggcgctga
ttgtagagaattagagaacgcctaATCGCTTATcgcccaatgggattaac
aaataacgacaGCCCTggcaattcaattttttttgccgaGGCAAATGGCT
AAATTTGCTGTTTGCCTCGGCAGAATAGGATTCTGCCTCAGcatttttcc
caatttaaaGGGAGGTCGGGGGACGTTACACTCCTGCGCAAAGAGTGCCT
CTCGTGAAcccaaaaatgaaacaaaatttgCCTTGGCATTTTTTTGCCGA
CGCAANGGGGACGTTACACTCTTGCGCACAGATTCTTCGATTGTTTCGGC
AGTTATCATTTTTagtaaaagtcttttgaaaaatttgcctCAGCATTATT
TTTGCCGACGCAAACACACTATAATCCAATTTACGTCAGCTTTTGCCTCG
GAATTTGCCGTATGCCGACGCCAATTACCAGGACtgaacgagtgtgtaac
ttgccgcgcgagtgacgtcaaacgctctatatcgttttgccactaatttg
ttcttcttcgttccagacatttgcGTACGTGTTCCActacatattttttt
catatttcgatttaaaagcctactcagtgcaaaagagaaattacAGGCCA
GTATCACTTACGTCCCATCTCACCAAggtgtttgaaaaaatagttcGAAA
GAAGATAGTCGAATTTATCAACAACAATGACTTGTTCAACCAAACACAGC
ATGGTTTCCGGGAAGGGCGATCATGCCTTAGTCAATTACTCAGCCACTAT
GACAGTATCCTATCAAAACTAGAAGAAGGATTGGATGTAGATGTTNNNNN
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NNNNNNNNNNNNNTCAGGAGTACCTCAAGGATCGGTTCTTGGGCCATTAT
TCTTCATCATCATGATATCAGACATTGATGAAGGGACAACCAAAGCAGAA
CTTGCAAGTTTTGCTGATGGCACACGAGTAAAGAAAGGAATCCAAAACAT
CATTGACCAGTTTCACCTACAAAACGTCCTTAACAATGTTTATCAATGGT
CGACCATAAACAAAAtgatgttaaatggaaaaaagttcGAGCATCTCCAT
TATGGAAACGGACCAGCCACCAGTTATTNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNCGAGCCACTCGTGACTGGCTACACTATGATGAG
ACGAGTTGAAACAAACAGCatcatcaatatgaaaatttacatcgGTCCTC
ACAGGATGGATGCGTATTTACGCGAAACAATGCGATATTACGAAACAAGC
TCAAGGTAACTCAAGgtaaattgtgtattttttaatacgccattcattaa
ctcaaatcagaCTTTGGAgattcggtgaaatggtggccaaattgccatcc
catgttttgtcagatagtcccaagttagagcaattGACggtacaatgctg
acaagttgacacaacacattgtcTGTGAGAGAAGcttatatcaaaatctg
caacaaaaacaaaagtggtccCTTCTATTGATTGCTTCCTggcgctcctt
cgcagctgtttatcaaatttccaccaaagaGATTGTCGCATTTCACACAG
CCCTTCCTTTTGGCACCGGTAGAATGCACCTCCCTGAGCTTAgggggcta
aaccatttttcCTTGATTGagggctgtatttttcaaaaaatactgggggc
tagcttgctaggggggctgagtgttgtgtaatagaactgggggcagagct
gataagttgaagatattttaagaATGATTCATGTTAAGaatctatgctgt
ggggaaggttttatCCCTCTTGAAAAGAATTGGGTGGTTTCCCACTCATT
TTGGTCATAAATCGCTTATAAAATGACACTTCTACATCAAATAACTCCCT
TTCAGTACAAAAATCGGCCATACTCGCTTCAAAGTCttatatataatttt
tcaagagctttcagattctataattggttttggcctaaaatgagtttgaa
aattacataaaaattgGGCCCTTGGGTGTTAGCCtagtttttcaataaat
gggTCCAGAAATAATGGCTACCCTTAAAACTTTTCTGGGCCTCCCTTCTA
ATATTAATCCACAGGGTATTAGACATGTCTGGTCCAAATTTGGTACAAAT
CGGGCCTACTATTCAAATTCAGTATATGAATAGAGTCAGtagaaaatata
acttttgtattttttccttttttttcaaaagttccagaaatgaaaataaa
gggataatgataattgaatactatccacgcATGATCCTCGGCACTATTGT
GCTAAAATTGCTTTGTGTAttctttgcttgagaaaatgattgacagatta
cagtaaagtttttttcacctttcaactcggccaaagattttaaaatggTA
TTTATAGAACTTAGCTGTGGCAGATCATTTCAATGGAAGTTGTTAGAAAG
TTTACAAGGCTCTTCATTTATTTGGTTCTCAtttgatgacagtgccgtta
ttgaTTTTGTTTGCAGTTCATTAGCAATAAGCCAAAAACTCAGTGATCAG
GATGATTTTCAGACATTGTCAACAGAACTCTGGGCACTGTGCTTAAAAAG
TCTACAATCATTATATGCCATTTTAGTCCGATATCAAATCATTTTGGCTT
GTGCAAGGTGGAACGAATCCTTCTGCCTAAATCTTCAATTTGAAATGGTT
AataatgacccctcattttctcaTTCAAGGTAAAGGCTTTCAAATGAATA
AGTTTTGTTTAAGCTACTAGCTTTTAGCTACATGTGTACACTTCAACTGC
CATTCATgaaaatacttgtccaaaacgatAATTTTGTTAGAACACCAATA
AAATCAAACCAATGAAATTTCCTTTgtctgaaataaaaaagctgatgCAA
TCAGTTTTGAAAGTGCagccgaaaaatcgaaaaaaaagaaaacatttgag
GGGCTTGTCAGGTATTAAATTTTGACTATTCTGATGTGAAGTTTTTAGCT
CCACCAACAACCTTACAATAAACGTGGAATTTAAACTGATTCACACCTAT
TTACACAGCCAAACATGGGATCTTACTAGCAATGGAGGAATCCGTTGACa
cattccagaaaatttctcAACTTGAATAGAATAGACCTTTAGCTAATCAG
GATACTCCATAATAGATCAGCCACAAAATGTAATGGCTTCAAGGACATTA
ATCTTATAGCAAAATAACCTAATAGGGGATCGACTACTTTTTTTGAACAC
TttaatttttaactttatttatttgaagACTTTGTAACCTAATGATTGCA
TGTGCACTTTTAGGAACTTAGGAATGCTGTCGGGACACTTTTTTAAGTTA
TTTAAATATACATTGTTTTTTTGTAAGgaatagtagagggcattttgtaa
aatcgctcgactgttttgttagaagcacttgttatacatttttggaaagc
taaggggtaggggaatcgaaattactgtgtttccaatttttttcggacac
tttggtgtgattttcggacaaatatgacaatctcaggcaaaaatcaaagg
ggtaaaaattaatgaaaattttagctcgaaaaaacagagacctgttgtat
atttttggaaagctctcaaaaaattaggattagagatatattgcaagtat
aggtgatttcagtacctaactcgagatattgagctNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAACTTTTTGGGGTCC
TATCATCACTACtaacatcctgtgaaaatttcggacctccaagttacccc
aatcaaaatttagcttttttgaaaatgccaaaacgaaacaattaaaaaac
atgtccataacaagtgcttctaacaaaacagtcaagcgattgcaaaaaat
cgaacaaaattccccctactagaatttaaggctgaaaaaatgctttaaaa
aatgagaaatttttaAGGAACTGATTAGGCTGAGAAAAAGTAAACaagtt
aaggaacagtaagaatTAAACTTGAACTTGCTCACATTTACAAAAACTTA
AATAAAAAGTTGGTAAAATATTGACTGAACAAGGTTCAATGAAGTTCTTT
TTGGACCTTCCTCAGAGGCTTTTAAGTTAACCTGTGTCTTTCCACCCGTC
CATCTGATAcaaacttttctcaggattggctcgttcaatttatggaccta
cctcggatgtcctttaatttaacctttgttcgttcgtccattcgtctgtt
accagcttttctagGGATTAAcccattagtttttttctgatattttgcat
tatgatgcaaaatgacagtacccaaaaagtgacggagcccgacttttgaa
aaaaatgttggaaaaccagtttttcttattttctaagTAAGTAAGTTGCG
TAttagtaatgcccaaaatgtggaagaagaagaagaacaaaaatgaactt
ttcatccTTTAGTGctagaaacttcatttttggaatAGTGGTACTTTGAA
GCCTCCTGATTTCATATatacaattatttttcacaaaagaTTATTGCAAG
GAAAGCTAGGCCTTGGTTGCTTGGAAGGTTGCCTGCTGGAGTAGAAGAAC
ACCAAAAAATGAGGTTTTTCTACTTAGATAAGCTAAATTTTAGAGGCTGT
AAGATTTTTAAGAGGCTTGAATTCTTATACAGCCATTGAAGTATTTCTCA
CAGCTTGGCTGCAAAAATTTTAAACGACACCTTTAATTTGAAGTAAACTA
AAACTGTGAGAAACAGTTTTTAAGTTTTGGGCCTGCGAGTTGTATATTTT
ACTTGTATACTTTATTacaataatatttctttattagaTTAAATCTTAAT
TCAGAAGGGGTCTGTCCTTGATTTTCCATAATTCGTTTCTGTTTCATTTA
TTTGAACTGTAATTAAACATTATAGGTTCAAGATCAAATCAATGCAATTT
GTGATATATTCTATTTAATAAAGCGCTTTCATTGATTATAtttatttaaa
gggacattaaagtagtaaaatgtaaacattgcctgAATCACGTgacatta
aagagaacaattaaaatcacgtgtccaaaacaaacttgtaaaacaattga
acaatcaaaattagccatatttggttagattttttattttNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttagattttttattttg
acatatgacatttgttttgattttgtatccgctgcatacagtttgtttac
aaatttcgcaagtactgttatgtccctttaactgTCAAATAATTTAAGAT
ATATGATTTCTATTAAtttgataatgtttttaaaattccatatttttgtt
tttgcagATTGGTGGAACGATTTCTGATGGATGGATAGTATCTTTTCGTC
ACATTTCTATACCAAAATTAGTCAATTAGGTAAACTAGGTCCTCTAATAG
CAACTTTTCATAGGTTGGATGTCAAAttgcaaagtcaaaaaaagatgtgt
ttttttgtgaaaatttaacttAATGTGAGACtccaattttaagattttaa
gattggaagtccaaatattttcaaaaacccaCATTCATAATGCAGTATAG
GTCCTCATTCACTTAGACTTAAACTTATTTAAGATGACACCTGGAAAGTC
AGGTTTCAGATTTGTGGGGCCTCAAAATTTAGATGGTACCTTTAAAGCTT
CTCCTCAAAAGTAcaagaaattaattttcttgatAAAGACAAATCTTATG
TCTGGGAGTATACAAATTCATTAATATCAAATGAACATTCCTTAACCAGT
TTCTTCCATAGCAAACCACAACAGTTATCAACCTACGCTCTTACTCTGTT
CAAATATTTCACGCAAATAGAAGGCAGAGATGTTAATGTTGGTAAGTTGA
TGTATTATTTTGCATAAACGTCCTGGGCGATTTTAGTAAGGGTGTATCTT
AAGGATGGTTAAAGATAAGCGCGCTTATTAAAAGTGAATAGGAACCTTTT
TTAGTCTTTTTCATATCTTGAGGCCCAGAAAAACCGAGTTTAACAAATTT
TATGCCATAAGTCTCAtaaggcgtttattcgaagtaatacaatatattca
atcatttttatcACTTTCTTGTATACAGAAGTTTGAACGCTCATAAAAAA
ATCTAGATAATTTGAGACCTTAGagcaaaaaataaattgttAATTCGTAA
AAATGTTCAGCAAATTCTCTGATTGAACAGGATTGAATTAAATTTTATAT
TGAAATTGATTTGTATATGAAATTGAGTATTATATTCAAGGTTCTGCTTC
TGattctatctttcttgattttagaattttgggATACGGCAGGGCAGGAA
CGATTTAGCAGTATGCACCCATCTTATTACCATTCTGCACATGCTTGTAT
TTTGGTAAGTCTTGCATTGAGACAAAAATGCTAATAACAATATGACATCT
TTCCTAGTTTTTAGACCAAAATCTGCCAAAATTGTCAAGAATTTTCTTTT
AACATGTTTTAGGTATTTGATGTTACAAGGAAACCAACATACAAAAACTT
AGCGAATTGGTATAAAGAATTACGTGAATACAGAGAAGACATACCTTGTA
TACTAGTCGCAAACAAGATAGACGGTATGTAAATGATTCCAATTTTATCT
TTTAAGCCTGGGCATCCTAGTCTTACTATGAGATAAGGGGTTCTTACCGA
TAGACACAGATGATAGCCTTAGTTGCACAAAAGAATGAAATTGTTGAATA
AAAAGGGTGTAGATACATTTTGCATAAACGAGAGATAGGACCCCTCTGCA
CATTGTGACTCTTTCACTATTTCCCCTCTTTCTTTGATTGACAATGCTTA
TTTATGTTTGACAACTAAttgctttctttttttctccatttcagTTGACT
ACAGTGTAACAAAGAAGAGTTTTAATTTTGCAAAGAAATATCATATGCCA
TTTTATTTTGTATCCGCTTCAGATGGAACCAACGTTGTCAAGGTTGAATA
CTGAACCTAACGGTCTTTTACAATGTTGTTTCAATACATTAGTTAATCTA
AAACCGAAAATTATGTACTTACTGGTACTTTAACAATTCCAAGactcaat
ttcaaatttcattctttCCAAAGACAAACTAATCAACGAGTCAGTTATTT
CTTAAGAAAGTCTAGAATACTTTGcttaagtatttcttttaacaaTTATG
ACGATGCTGACCTTTTTGTTTTCACTGGGTATTACTTTGATAAACAGAAC
TTTCTTTTTCACTCTCTTACACCAGGTATTTCGAGAAGCTATACGATTAG
GTTTGGATTATAAAGATAACTCGACAGACTTTGTTGATGAAGTTTTGAAA
GAATTAGAGGTAGGATGTGTTTCGAGCTTTTCGAAGTGTCCTGGAACATA
ATCTATTGAGTTTTTATCACCAAGAAACAGGCTCTTATTTGccaaattta
tcaatttacttTATTCAAAAACCTCGTTAATTTGCGTTGGCAAAGTCCTG
ACCTTTTCTTTGGACAGCCTTTAAGTGGAATTTTCTCTACcttgcttttt
attttactttaataGCATATGGAGGAAACAGACAAAAGTTTGGCTTCTTC
AACTCCTTCATCGATATCACCCACAAGCTCCAAAGATGATCCATGATTCA
AGATGGTTTATTTCTCATACAGCGGAAAAAGTTTAGGGAAGAAAACTTAA
CTGTATGATGTCTTTTGTTTTGGAATGTTCACTTTTGTTTTGTATTCTTG
ACAAGAGTATGGCTTTGTACTCACTCGCACGATACGTTCTTTTTTCATTT
GCGTGGTGATCTTtagtcattttcatttcaatgttttttaaaataacttt
tagtcttttttccttttgttaaatcaaggaaaaacttaaaatgaaattga
attttttttacctaatAATATTTTAGATATGTTTTTTATTCGATTGATTG
CTTCTGTTTTAACAGCGCAACGTAAGGCAAGTAGATTTCAGTTGAGGCTA
GGATATTCTTCTTCGTCCatgattttcagactttgaaTTTGATCTCGATG
TATCCTTGCTGTACTCAGCTTACTGACTACTTGGCTCAAAATGGGGTTCA
AATCAGCATTTTCGTTGCCAATGAAGCCTGACACGATAGGTTTACTTTTT
ATTCGACAATACATGCTATTATTAATTTCTGGACCATCAATCTTCTTTCA
TTTCTTGTCCAAACTTTTTTCAACAATAACTAGAAAAAGATTTTGACCTG
TCTTTGCTTGCCTCTTATCATTGCCTTTTGTTGATACTTTTATTGGTTAC
CGCACGATATGACAAAAATTTATCAAGAATCTGTGGTTAGTTGTGATATA
CTTGCTGGTAGTCAAATTATATGTTAATATATTGCAATGATGTGTGTTAT
Tgtagattttgcagattgaatttttttaacgcgttcatcatcatttttaa
aaggaaaatataaaataagGAATGTCAttgtaaaacattattttaagttt
agaaatatataaattataactttttatttacCTTGTAAAATTTGACCTCC
ATTTTTCTGCCTATAGAAATTGAGTATTTGATTTTTCTCAATAGTCGACT
TTTAAAACTTGTATAAGCCAG

Coding sequence (CDS) from alignment at scaffold_253:616747..631217+

>TCONS_00055354 ID=TCONS_00055354|Name=TCONS_00055354|organism=Clytia hemisphaerica|type=CDS|length=5064bp|location=Sequence derived from alignment at scaffold_253:616747..631217+ (Clytia hemisphaerica)
ATGGAGGAAAAAAGCGGAGAAAAAGTCAAAGTCATCTGTCTTGGAGACAG
TGCCGTTGGTAAATCAAAATTGGTGGAACGATTTCTGATGGATGGATACA
AACCACAACAGTTATCAACCTACGCTCTTACTCTGTTCAAATATTTCACG
CAAATAGAAGGCAGAGATGTTAATGTTGaattttgggATACGGCAGGGCA
GGAACGATTTAGCAGTATGCACCCATCTTATTACCATTCTGCACATGCTT
GTATTTTGGTATTTGATGTTACAAGGAAACCAACATACAAAAACTTAGCG
AATTGGTATAAAGAATTACGTGAATACAGAGAAGACATACCTTGTATACT
AGTCGCAAACAAGATAGACGTTGACTACAGTGTAACAAAGAAGAGTTTTA
ATTTTGCAAAGAAATATCATATGCCATTTTATTTTGTATCCGCTTCAGAT
GGAACCAACGTTGTCAAGGTATTTCGAGAAGCTATACGATTAGGTTTGGA
TTATAAAGATAACTCGACAGACTTTGTTGATGAAGTTTTGAAAGAATTAG
AGCATATGGAGGAAACAGACAAAAGTTTGGCTTCTTCAACTCCTTCATCG
ATATCACCCACAAGCTCCAAAGATGATCCATGAATGGAGGAAAAAAGCGG
AGAAAAAGTCAAAGTCATCTGTCTTGGAGACAGTGCCGTTGGTAAATCAA
AATTGGTGGAACGATTTCTGATGGATGGATACAAACCACAACAGTTATCA
ACCTACGCTCTTACTCTGTTCAAATATTTCACGCAAATAGAAGGCAGAGA
TGTTAATGTTGaattttgggATACGGCAGGGCAGGAACGATTTAGCAGTA
TGCACCCATCTTATTACCATTCTGCACATGCTTGTATTTTGGTATTTGAT
GTTACAAGGAAACCAACATACAAAAACTTAGCGAATTGGTATAAAGAATT
ACGTGAATACAGAGAAGACATACCTTGTATACTAGTCGCAAACAAGATAG
ACGTTGACTACAGTGTAACAAAGAAGAGTTTTAATTTTGCAAAGAAATAT
CATATGCCATTTTATTTTGTATCCGCTTCAGATGGAACCAACGTTGTCAA
GGTATTTCGAGAAGCTATACGATTAGGTTTGGATTATAAAGATAACTCGA
CAGACTTTGTTGATGAAGTTTTGAAAGAATTAGAGCATATGGAGGAAACA
GACAAAAGTTTGGCTTCTTCAACTCCTTCATCGATATCACCCACAAGCTC
CAAAGATGATCCATGAATGGAGGAAAAAAGCGGAGAAAAAGTCAAAGTCA
TCTGTCTTGGAGACAGTGCCGTTGGTAAATCAAAATTGGTGGAACGATTT
CTGATGGATGGATACAAACCACAACAGTTATCAACCTACGCTCTTACTCT
GTTCAAATATTTCACGCAAATAGAAGGCAGAGATGTTAATGTTGaatttt
gggATACGGCAGGGCAGGAACGATTTAGCAGTATGCACCCATCTTATTAC
CATTCTGCACATGCTTGTATTTTGGTATTTGATGTTACAAGGAAACCAAC
ATACAAAAACTTAGCGAATTGGTATAAAGAATTACGTGAATACAGAGAAG
ACATACCTTGTATACTAGTCGCAAACAAGATAGACGTTGACTACAGTGTA
ACAAAGAAGAGTTTTAATTTTGCAAAGAAATATCATATGCCATTTTATTT
TGTATCCGCTTCAGATGGAACCAACGTTGTCAAGGTATTTCGAGAAGCTA
TACGATTAGGTTTGGATTATAAAGATAACTCGACAGACTTTGTTGATGAA
GTTTTGAAAGAATTAGAGCATATGGAGGAAACAGACAAAAGTTTGGCTTC
TTCAACTCCTTCATCGATATCACCCACAAGCTCCAAAGATGATCCATGAA
TGGAGGAAAAAAGCGGAGAAAAAGTCAAAGTCATCTGTCTTGGAGACAGT
GCCGTTGGTAAATCAAAATTGGTGGAACGATTTCTGATGGATGGATACAA
ACCACAACAGTTATCAACCTACGCTCTTACTCTGTTCAAATATTTCACGC
AAATAGAAGGCAGAGATGTTAATGTTGaattttgggATACGGCAGGGCAG
GAACGATTTAGCAGTATGCACCCATCTTATTACCATTCTGCACATGCTTG
TATTTTGGTATTTGATGTTACAAGGAAACCAACATACAAAAACTTAGCGA
ATTGGTATAAAGAATTACGTGAATACAGAGAAGACATACCTTGTATACTA
GTCGCAAACAAGATAGACGTTGACTACAGTGTAACAAAGAAGAGTTTTAA
TTTTGCAAAGAAATATCATATGCCATTTTATTTTGTATCCGCTTCAGATG
GAACCAACGTTGTCAAGGTATTTCGAGAAGCTATACGATTAGGTTTGGAT
TATAAAGATAACTCGACAGACTTTGTTGATGAAGTTTTGAAAGAATTAGA
GCATATGGAGGAAACAGACAAAAGTTTGGCTTCTTCAACTCCTTCATCGA
TATCACCCACAAGCTCCAAAGATGATCCATGAATGGAGGAAAAAAGCGGA
GAAAAAGTCAAAGTCATCTGTCTTGGAGACAGTGCCGTTGGTAAATCAAA
ATTGGTGGAACGATTTCTGATGGATGGATACAAACCACAACAGTTATCAA
CCTACGCTCTTACTCTGTTCAAATATTTCACGCAAATAGAAGGCAGAGAT
GTTAATGTTGaattttgggATACGGCAGGGCAGGAACGATTTAGCAGTAT
GCACCCATCTTATTACCATTCTGCACATGCTTGTATTTTGGTATTTGATG
TTACAAGGAAACCAACATACAAAAACTTAGCGAATTGGTATAAAGAATTA
CGTGAATACAGAGAAGACATACCTTGTATACTAGTCGCAAACAAGATAGA
CGTTGACTACAGTGTAACAAAGAAGAGTTTTAATTTTGCAAAGAAATATC
ATATGCCATTTTATTTTGTATCCGCTTCAGATGGAACCAACGTTGTCAAG
GTATTTCGAGAAGCTATACGATTAGGTTTGGATTATAAAGATAACTCGAC
AGACTTTGTTGATGAAGTTTTGAAAGAATTAGAGCATATGGAGGAAACAG
ACAAAAGTTTGGCTTCTTCAACTCCTTCATCGATATCACCCACAAGCTCC
AAAGATGATCCATGAATGGAGGAAAAAAGCGGAGAAAAAGTCAAAGTCAT
CTGTCTTGGAGACAGTGCCGTTGGTAAATCAAAATTGGTGGAACGATTTC
TGATGGATGGATACAAACCACAACAGTTATCAACCTACGCTCTTACTCTG
TTCAAATATTTCACGCAAATAGAAGGCAGAGATGTTAATGTTGaattttg
ggATACGGCAGGGCAGGAACGATTTAGCAGTATGCACCCATCTTATTACC
ATTCTGCACATGCTTGTATTTTGGTATTTGATGTTACAAGGAAACCAACA
TACAAAAACTTAGCGAATTGGTATAAAGAATTACGTGAATACAGAGAAGA
CATACCTTGTATACTAGTCGCAAACAAGATAGACGTTGACTACAGTGTAA
CAAAGAAGAGTTTTAATTTTGCAAAGAAATATCATATGCCATTTTATTTT
GTATCCGCTTCAGATGGAACCAACGTTGTCAAGGTATTTCGAGAAGCTAT
ACGATTAGGTTTGGATTATAAAGATAACTCGACAGACTTTGTTGATGAAG
TTTTGAAAGAATTAGAGCATATGGAGGAAACAGACAAAAGTTTGGCTTCT
TCAACTCCTTCATCGATATCACCCACAAGCTCCAAAGATGATCCATGAAT
GGAGGAAAAAAGCGGAGAAAAAGTCAAAGTCATCTGTCTTGGAGACAGTG
CCGTTGGTAAATCAAAATTGGTGGAACGATTTCTGATGGATGGATACAAA
CCACAACAGTTATCAACCTACGCTCTTACTCTGTTCAAATATTTCACGCA
AATAGAAGGCAGAGATGTTAATGTTGaattttgggATACGGCAGGGCAGG
AACGATTTAGCAGTATGCACCCATCTTATTACCATTCTGCACATGCTTGT
ATTTTGGTATTTGATGTTACAAGGAAACCAACATACAAAAACTTAGCGAA
TTGGTATAAAGAATTACGTGAATACAGAGAAGACATACCTTGTATACTAG
TCGCAAACAAGATAGACGTTGACTACAGTGTAACAAAGAAGAGTTTTAAT
TTTGCAAAGAAATATCATATGCCATTTTATTTTGTATCCGCTTCAGATGG
AACCAACGTTGTCAAGGTATTTCGAGAAGCTATACGATTAGGTTTGGATT
ATAAAGATAACTCGACAGACTTTGTTGATGAAGTTTTGAAAGAATTAGAG
CATATGGAGGAAACAGACAAAAGTTTGGCTTCTTCAACTCCTTCATCGAT
ATCACCCACAAGCTCCAAAGATGATCCATGAATGGAGGAAAAAAGCGGAG
AAAAAGTCAAAGTCATCTGTCTTGGAGACAGTGCCGTTGGTAAATCAAAA
TTGGTGGAACGATTTCTGATGGATGGATACAAACCACAACAGTTATCAAC
CTACGCTCTTACTCTGTTCAAATATTTCACGCAAATAGAAGGCAGAGATG
TTAATGTTGaattttgggATACGGCAGGGCAGGAACGATTTAGCAGTATG
CACCCATCTTATTACCATTCTGCACATGCTTGTATTTTGGTATTTGATGT
TACAAGGAAACCAACATACAAAAACTTAGCGAATTGGTATAAAGAATTAC
GTGAATACAGAGAAGACATACCTTGTATACTAGTCGCAAACAAGATAGAC
GTTGACTACAGTGTAACAAAGAAGAGTTTTAATTTTGCAAAGAAATATCA
TATGCCATTTTATTTTGTATCCGCTTCAGATGGAACCAACGTTGTCAAGG
TATTTCGAGAAGCTATACGATTAGGTTTGGATTATAAAGATAACTCGACA
GACTTTGTTGATGAAGTTTTGAAAGAATTAGAGCATATGGAGGAAACAGA
CAAAAGTTTGGCTTCTTCAACTCCTTCATCGATATCACCCACAAGCTCCA
AAGATGATCCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034871XLOC_034871Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055354-exon-scaffold_253-1491911889:616747..616992TCONS_00055354-exon-scaffold_253-1491911889:616747..616992Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1510915933:616747..616992TCONS_00055354-exon-scaffold_253-1510915933:616747..616992Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1575043694:616747..616992TCONS_00055354-exon-scaffold_253-1575043694:616747..616992Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1491911889:627954..627983TCONS_00055354-exon-scaffold_253-1491911889:627954..627983Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1510915933:627954..627983TCONS_00055354-exon-scaffold_253-1510915933:627954..627983Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1575043694:627954..627983TCONS_00055354-exon-scaffold_253-1575043694:627954..627983Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1491911889:628408..628487TCONS_00055354-exon-scaffold_253-1491911889:628408..628487Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1510915933:628408..628487TCONS_00055354-exon-scaffold_253-1510915933:628408..628487Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1575043694:628408..628487TCONS_00055354-exon-scaffold_253-1575043694:628408..628487Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1491911889:628921..629000TCONS_00055354-exon-scaffold_253-1491911889:628921..629000Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1510915933:628921..629000TCONS_00055354-exon-scaffold_253-1510915933:628921..629000Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1575043694:628921..629000TCONS_00055354-exon-scaffold_253-1575043694:628921..629000Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1491911889:629109..629220TCONS_00055354-exon-scaffold_253-1491911889:629109..629220Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1510915933:629109..629220TCONS_00055354-exon-scaffold_253-1510915933:629109..629220Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1575043694:629109..629220TCONS_00055354-exon-scaffold_253-1575043694:629109..629220Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1491911889:629491..629588TCONS_00055354-exon-scaffold_253-1491911889:629491..629588Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1510915933:629491..629588TCONS_00055354-exon-scaffold_253-1510915933:629491..629588Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1575043694:629491..629588TCONS_00055354-exon-scaffold_253-1575043694:629491..629588Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1491911889:629872..629955TCONS_00055354-exon-scaffold_253-1491911889:629872..629955Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1510915933:629872..629955TCONS_00055354-exon-scaffold_253-1510915933:629872..629955Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1575043694:629872..629955TCONS_00055354-exon-scaffold_253-1575043694:629872..629955Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1491911889:630162..631217TCONS_00055354-exon-scaffold_253-1491911889:630162..631217Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1510915933:630162..631217TCONS_00055354-exon-scaffold_253-1510915933:630162..631217Clytia hemisphaericaexon
TCONS_00055354-exon-scaffold_253-1575043694:630162..631217TCONS_00055354-exon-scaffold_253-1575043694:630162..631217Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055354-proteinTCONS_00055354-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:616747..631217 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.719	10.0579	15.5541	18.0036	115.719	79.2759	52.118	55.2651	53.3279	51.17	38.3319	44.7791	16.1447	14.1042	19.8786	20.3775	17.2222	16.1744	11.7933	13.327	19.3026	18.4902	30.2897	31.8704	31.1885	29.8605	49.5312	35.0337	43.2688	39.071
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00055354 vs. Swiss-Prot (Human)
Match: RBL2B (Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 1.176e-89
Identity = 126/181 (69.61%), Postives = 156/181 (86.19%), Query Frame = 2 
Query:  191 SGEKVKVICLGDSAVGKSKLVERFLMDGYKPQQLSTYALTLFKYFTQIEGRDVNVEFWDTAGQERFSSMHPSYYHSAHACILVFDVTRKPTYKNLANWYKELREYREDIPCILVANKIDVDYSVTKKSFNFAKKYHMPFYFVSASDGTNVVKVFREAIRLGLDYKDNSTDFVDEVLKELEH 733
            + + VK+ICLGDSAVGKSKL+ERFLMDG++PQQLSTYALTL+K+   ++GR + V+FWDTAGQERF SMH SYYH AHACI+VFDV RK TY+NL+ WY ELRE+R +IPCI+VANKID D +VT+KSFNFAKK+ +P YFVSA+DGTNVVK+F +AIRL + YK NS DF+DE+ +ELE+
Sbjct:   18 ADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELREFRPEIPCIVVANKID-DINVTQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVSYKQNSQDFMDEIFQELEN 197
The following BLAST results are available for this feature:
BLAST of TCONS_00055354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBL2B1.176e-8969.61Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=1... [more]
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