TCONS_00055401 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055401
Unique NameTCONS_00055401
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3021

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055401 ID=TCONS_00055401|Name=TCONS_00055401|organism=Clytia hemisphaerica|type=transcript|length=3021bp
aACAGTTGATGCACTTGGATCTTCTGATCCATTCAATATGATGGTGAAAG
ATAtgccagattttgaaaaacctgCCTTGAAGAAATCACTATTTGAGCGA
CTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAAAAAGGGGA
TTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACGACC
TTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCACTG
atgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCCCTA
TGAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCTCCTC
TCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTGATCTATTCTATGATGGC
TGTGTCATTGTGGAGTTACGTGATTACAGAAGAAGTACTCAGAAAAACTT
TGATACCACCTACATTTTATTAAAACCAACCTCACAGACCATTGTTCGTG
ATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAAGGCC
AAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTTTAGA
TCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCATGCCA
ATAAATGGAATCATAAAGGTTTACGAAGGTCAATGAAAAGATTTTCACAG
CCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCATG
TTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCCAGTA
ATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTGGAAA
CAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTAACCTCACA
TGCAAAACTGATGGAACTACCGAAATACACAACAGATTATACGCCAGAGA
AAATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACCGTTCTTAT
TATTGTCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAATATATTGG
CGATCTCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATACGAAGA
AAGATGGGCGTGCATGCAGGTTTTCTCTGGTCAACCGAATCACAGCGCAA
CGCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGAAATC
AgtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaatcaacaac
aacaacagcaacaagcACAAAACAGTAACAACGCCTCACAACAAGCCAAA
ACACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTACAACAAGC
TGCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCGACAT
CCACGACACAAATGACAACCCATACCATCGTCAATCAGAATCGCACGTTC
ACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACATACATTCT
TGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAATGTTGTAC
CAATGTCGTTATCAAGGAATCCTTACATAGTAAATTCATCAGGAAACCTT
CAACAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAATTATTGG
AGCGTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCAATCTGTAT
CGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGGCAGTTCCT
ATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGTTCAT
AGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCACTGGGC
AAATCATGCTGCAGGTACCAGGCAATCTTGTACCACTCTCTCAAATGACC
AGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGCATGGC
TTCGGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCATGA
TACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATCCCAGGT
CTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTCGTGCA
AGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACAGGGACAGC
CAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAAGCACTG
CAAGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAACGCAGGT
TGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGACACCAGG
GCCAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAACAACTT
CAAATCGTCCCTCAAATACAAAAACAAGCAGTAATTACAAGTTCAGCTGG
ACGCACGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTTAACT
TGATCCCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCAATTC
ACTACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGCTTC
TCAACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTACTA
AACCTTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATTTCAC
ATCTGTATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAAGTGT
TCTGTTCTGAATGAACTACTTTTGATATATCATCAATGGCAAAATGTCAC
TTTACTAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCGGCAT
ACATAGTCATAATAATGATTTCAttgtgaaaacattttttctgttgcaGG
TGTTGTATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCTCTTC
TGCTATAAACTACTTATTATTATGGACTGTATATACTTTTTTTAACTACT
TTTGACACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCTTAgg
atattcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682253..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055401 ID=TCONS_00055401|Name=TCONS_00055401|organism=Clytia hemisphaerica|type=transcript|length=12076bp|location=Sequence derived from alignment at scaffold_253:682253..694328+ (Clytia hemisphaerica)
aACAGTTGATGCACTTGGATCTTCTGTAAGTCTATTTACTACAGTATGAT
AAAACTTAGAAAGTTTCTGATTTTAATCATTAATTCTCTTTTTCCCTAAT
AATAACAATTACGGGTTTTCAATTTAGGATCCATTCAATATGATGGTGAA
AGATAtgccagattttgaaaaacctNTGTGCTGTATAACGACATTATAAT
TTCCTTAAAGCTTTTTTGTATGAAACTTTGACTCTTCGCTCCACGAAAGC
TTTAACCTTCAAAATTGAAGTAATTTACTCAAAAAAGAATCCTATTTCTA
GAAAATACAGTTTATTTtgtaatatatataatatagtGGTAGTATACGAT
AGCAATAATATTGTGATAATTGTAATGATTTCTATTATAtaagtttttat
ttatgatatttAGTAATCCCAACTTTAGTTTAATATTATCTtatgatttt
tcagaaatacatttttcaaaatttttttttgtaacctAAAGTTGATTCTT
CAGCTAGTTTCTTTGTCAATAAAAGTCGTAAACTAACCGTCTTGTATTTC
ATCTTAGAATCTGATAGAATACAATAATGacaatataaaataaacaaata
aaaatgttatcaACAGTTGATGCACTTGGATCTTCTGTAAGTCTATTTAC
TACAGTATGATAAAACTTAGAAAGTTTCTGATTTTAATCATTAATTCTCT
TTTTCCCTAATAATAACAATTACGGGTTTTCAATTTAGGATCCATTCAAT
ATGATGGTGAAAGATAtgccagattttgaaaaacctgCCTTGAAGTGAGT
ATAataacataaaaaaatattttgattgtgTTATTAACTATGCTACAAAT
ACAAGGTGTTGTGAATTTATTTGCTGTATTTTGAAACCTCTGttagaaag
aaaaaatcagtcccatttattgactttttaaaatttttatacaaatttga
tTTAGTGGAGTGCTGAATAAGTTTTTTGAGAGAAATAAATTTGGGAGATG
GTtgggaaaaagatttttgatgggaattcattttggcaatttttggtcaa
aaatctTCATTAGATATTCTCATTAAAATCACATTATTCATATAGGAAAT
CACTATTTGAGCGACTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAA
CAAGAAAAAGGGGTAAACTAGCAATTAAAATAAGCTTTTTTTTCTCCATA
GTATATGGGTTGATATCAAAATATCCCATCATGTTTTATTCCACCATGGT
ATGTGATATAGTGTTATAAGCTTATTAAAGTTTATAAGAATGAAAGTGCA
CTTTTTccaatctttttgaaatatgataaacAATAGATATTACATTGAAC
AACTACTGAAATTCAGTATGAAATAATATTGAaacacttttatttttcct
taaGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAG
ACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATAT
TCACTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACT
CCCCTATGAGGTAATTTGTATTAGGTAATTACATAGTCTTTAAGGGGTAG
AACATTATGACATATCTGTAAAATCCTAATTTAGTGAGGTTTTGCTAAAT
ATGAGAGGATACTTAGATCCATGTGACATTATTTTGCTAATGAAATTACT
TGAAACTGAAGAGGATAAAGCCTGAGTCATTATTATTGTTTACATTGAAA
TgagtgaaaaatataaaaatacttcTGGTTTTGAAATCATCATGTCAATC
ATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGAAAGTGAATTCTT
AGATTACTTGGATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGG
AGAGTGCTCAGGTTTGTAGGTCCATCACAACAACATACTTAACGAAGTTG
GAATCGTACATAATGTCAGCTTTGTCAAGCAGAATCCTCTCAAATTTTAG
ATGATCgtgctattcatgatattataccaccctaaATATTTTCCCAAACA
AAGGGTATTGGTTTTCAAATattagaagctgaaaacccacttttCTTGGT
ATTTTGTACCTTCCCTACAATTTCATGCACCTCGCTTTTAAAGAATAAGC
TCTAGtctagacggccgactttctgtcctgcctattctaattgttagtgT
AGGCAGAAAGCGTAcacaaagttggcagttaaaatctttgcttggaaaag
attgaaagaagtcattgcgttgacgtcaaaaaagggcaatgcattgactt
tagacagcccactttattaagcccactttaattcacaattagaataggca
gggcgaaaagtgggccgtctaaactagagctaacaTCCACCTGTTTGtta
ttcttttgaaaagaattagAAATTAGAAATGTTAAAGAGACTGAAATCCT
ATCAccaaatttttgcttttcaACTGCCTTCAGAACTCtcattttttcat
tgtttattactttttgataaaattttatacTACAGAAAATTAAATATATC
CCTATGTAACGATGTTAAGAAATTCTTTGTTTTCCATGAATAGGTTGATC
TATTCTATGATGGCTGTGTCATTGTGGAGTTACGTGATTACAGAAGAAGT
ACTCAGAAAAACTTTGATACCACCTACATTTTATTAAAACCAACCTCACA
GGTAAGCAGTATTTTGTTTAAAGTTGTATTTATTTCTCTTCAGGAACAAA
CTCCTTTTAATACACATTTGTTCTCTTACTTGGttgtagattttattttc
attgaagCATTTTCCAACTGATTTTGGTCATAAGAGTACTGTACTATGTT
TAGTGTAAACTACCTATATCTAATATATTTGTCTCTCTGAAATCTTTGTA
GACCATTGTTCGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTA
ACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCA
AGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAAT
ACAACACCATGCCAATAAATGGAATCATAAAGGTTTACGAAGGTAAACAC
CAATGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACA
AACCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAACATGAACC
TAATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCA
AAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGA
ACCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTG
TTAGATTTCATCAAACAAAACAAANgaaaaatataaaaatacttcTGGTT
TTGAAATCATCATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCT
TTATAGGAAAGTGAATTCTTAGATTANTTAAAGTTTATAAGAATGAAAGT
GCACTTTTTccaatctttttgaaatatgataaacAATAGATATTACATTG
AACAACTACTGAAATTCAGTATGAAATAATATTGAaacacttttattttt
ccttaaGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGG
AAGACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGA
TATTCACTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAA
ACTCCCCTATGAGGTAATTTGTATTAGGTAATTACATAGTCTTTAAGGGG
TAGAACATTATGACATATCTGTAAAATCCTAATTTAGTGAGGTTTTGCTA
AATATGAGAGGATACTTAGATCCATGTGACATTATTTTGCTAATGAAATT
ACTTGAAACTGAAGAGGATAAAGCCTGAGTCATTATTATTGTTTACATTG
AAATgagtgaaaaatataaaaatacttcTGGTTTTGAAATCATCATGTCA
ATCATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGAAAGTGAATT
CTTAGATTACTTGGATACACAAGAACTACCTCCTCTCCTTGTGGATGTTT
TGGAGAGTGCTCAGGTTTGTAGGTCCATCACAACAACATACTTAACGAAG
TTGGAATCGTACATAATGTCAGCTTTGTCAAGCAGAATCCTCTCAAATTT
TAGATGATCgtgctattcatgatattataccaccctaaATATTTTCCCAA
ACAAAGGGTATTGGTTTTCAAATattagaagctgaaaacccacttttCTT
GGTATTTTGTACCTTCCCTACAATTTCATGCACCTCGCTTTTAAAGAATA
AGCTCTAGtctagacggccgactttctgtcctgcctattctaattgttag
tgTAGGCAGAAAGCGTAcacaaagttggcagttaaaatctttgcttggaa
aagattgaaagaagtcattgcgttgacgtcaaaaaagggcaatgcattga
ctttagacagcccactttattaagcccactttaattcacaattagaatag
gcagggcgaaaagtgggccgtctaaactagagctaacaTCCACCTGTTTG
ttattcttttgaaaagaattagAAATTAGAAATGTTAAAGAGACTGAAAT
CCTATCACCAAATTTTGCTTTTCAACTGCCTTCAGAACTCtcattttttc
attgtttattactttttgataaGATTTTATACTACAGAAAATTAAATATA
TTCCTATGTAACGATCGATGTTAAGAAATTCTTTGTTTTCCATGAATAGG
TTGATCTATTCTATGATGGTTGTGTCATTGTGGAGTTACGTGATTACAGA
CGAAGTACTCAGAAAAACTTTGATACCACTTACATTTTATTAAAACCAAC
CTCACAGGTAAGCAGTGTTGTGTTTATTTCTCTTCAGGAACAAACTCCTT
TTAATACACATTTGTTCTCTTACTTGGttgtagattttattttcattgaa
gCATTTTCCAACTGATTTTGGTCATAAGAGTACTGTACTATGTTTAGTGT
AAACTACCTATATCTAATATATTTGTCTCTCTGAAATCTTTGTAGACCAT
TGTTCGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAG
ACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTG
TGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACA
CCATGCCAATAAATGGAATCATAAAGGTTTACGAAGGTAAACACCAATGG
ATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCA
ATGTCACTACCAATAAATAAATCTTACCTGATTAAACATGAACCTAATCA
ATGTTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCC
ATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTG
CATATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGAT
TTcatcaaacaaaacaaagataaacGTTCCAGTAATTCTTTCCATAAATT
GAGTAGAGCCACCCAACATACTGACATGTGGAAACAAAGACAACTCAACC
TATCTGTGCCATCGAAAATAGACGTTAGTTATTCTTTTTTATACATTCTA
ACTTCACTATACCATACACCtcctcacagacccactgggactccttccca
ctggaaaaattggcctaaATATCGTCcctagtggaaaattatacactTAA
TTTGTATCCCAACTAAAAATAATCCAATGAACTAATCCCCACTACTTATA
TCATGCTATTTTCTatcctcactgaattttctgacttaaaaacaatggaa
tttaaatccaCAGTCATAAAAGTATAGGAATATCGATCCCCAACgaattt
cagtccgttatttttacccccactggctgaaaaaatcccacccccttctc
acacacccgagaagggggtgtatcatttAATACCGATTCTTCATATCTCA
CGGCTTAAAGAGCTCAAAGTATGAACTAATCATGAACTAACAGTGACTCC
TTGCANGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGA
CAAACCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAACATGAA
CCTAATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTATTATC
CAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTT
GAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGC
TGTTAGATTTcatcaaacaaaacaaagataaacGTTCCAGTAATTCTTTC
CATAAATTGAGTAGAGCCACCCAACATACTGACATGTGGAAACAAAGACA
ACTCAACCTATCTGTGCCATCGAAAATAGACGTTAGTTATTCTTTTTTAT
ACATTCTAACTTCACTATACCATACACCtcctcacagacccactgggact
ccttcccactggaaaaattggcctaaATATCGTCcctagtggaaaattat
acactTAATTTGTATCCCAACTAAAAATAATCCAATGAACTAATCCCCAC
TACTTATATCATGCTATTTTCTatcctcactgaattttctgacttaaaaa
caatggaatttaaatccaCAGTCATAAAAGTATAGGAATATCGATCCCCA
ACgaatttcagtccgttatttttacccccactggctgaaaaaatcccacc
gggtgtgtgagaagggggtgtatcatttAATACCGATTCTTCATATCTCA
CGGCTTAAAGAGCTCAAAGTATGAACTAATCGTGAACTAACAATGACTCC
TTGCAAACAGTATTTGTCTATCATCGTTAAAAGTTTCGATGGTGGTCGAA
AGGAATAAGTTAtttgatatttcaattttagtttaaaCCACGACTCTCAT
TTTACAAACTCTTTTAGGTAACCTCACATGCAAAACTGATGGAACTACCG
AAATACACAACAGATTATACGCCAGAGAAAATCCAAGAAATTATTTTGGA
AGGCGAAAAGACCAACAACCGTTCTTATTATTGTCGTGTTACCATCCAAA
GACGTGGCTCAACAGGCGAATATATTGGCGATCTCTACCTAGAGGAAGAC
CATGGGAAAACGAAGGAAGATACGAAGAAAGATGGGCGTGCATGCAGGTT
TGTCTTTTTTGTTAATTACCTTAGAGAGACTTGGACGGTGTTTAGAAAAC
ACCCATGAGGACAGATAGTCTAGAATATGTCAACTCAAATGCTGTCTTGA
CTTCAAAAGTTATGGAAACCTTTAGGATCGTTATTTGACCTGACAGATTT
GTTTTATTTGTAGAATTTTTCCTGGTACCTTAGGTTATGGAGTTCAATTC
TATAGTTAGATCTATTTATCAAGCTTTGTATCATTtggtttttatcattt
tattttacattcTTTTCGAAAGGTTTTCTCTGGTCAACCGAATCACAGCG
CAACGCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGAA
ATCAgtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaatcaac
aacaacaacagcaacaagcACAAAACAGTAACAACGCCTCACAACAAGCC
AAAACACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTACAACA
AGCTGCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCGA
CATCCACGACACAAATGACAACCCATACCATCGTCAATCAGAATCGCACG
TTCACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACATACAT
TCTTGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAATGTTG
TACCAATGTCGTTATCAAGTTCGTTTTTTGAGTTTTACTTAATATCTTTC
TTGTGTCTCTACTAAGATTTTCTCATCTAAgattttctctatttttcgCT
TCTAGAATAGTTCCTCTGTTCCACATCCAAAATCTTATACAACATAACCA
GTAAACTCTCTTTTTTCTCTCTACATGAGTTTACATAACTCAAACGCCAA
GTAAGGACAACCCAGTAACTCTTCGAGTTGCAGAGTAAAAAATCAATACC
TTAAGGGGTCAGAAAGAATGTTTCGACTACATTGAAATAATGTGCGAGTT
ATGAAGAGATGCTTTAACATTCAATTTAATTATTCAATCTTCTAGGGAAT
CCTTACATAGTAAATTCATCAGGAAACCTTCAACAAGCTGTATCAACCAA
AACCAACCAATCGCCAAGCAAAATTATTGGAGCGTCTAATGAAAATGCAC
AGCTAACAACAGCTTACATCCAAGTAACTTCTCATAAATTGATTCTTCCT
TTTTTAATTCCAATTATCACCCAAGGGTGTTTAATTTTGAGCACCATCTA
GATTACTTCTGATTGACACGACCATTCTCAAACCGCTCAACTCGTAATAC
AAATGCTTGTTCAGTTAGCACTAATCATTTTCATACAACGATAAATATTG
TTTTGCTTCAGTCTGTATCGGGTGCAACGATAGGAGGAACTTCACATGGT
CAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGT
CCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATACGTC
CAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACATgatcaaatcttt
tttgttggaataataatattttgcaaaaagtATCAAGTTATTGACTCTAG
TTGGTCTAAGTTGTCTTTGCTCCAACTAATTTTATTTGGCATTTCTTTAA
TAGTGTGAATTGAGCTCTGGTTCTGGTTTTCCTGGATATTAAATTGTATG
TCATCCAATACcttacttatttttcaaagtattgtaattttaaagcttaa
aagtatttgttgtttttgtaaacTTTCCAGGTACCAGGCAATCTTGTACC
ACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTC
CTGGTGCTGGCATGGCTTCGGTTATGGTCCACGGGAAGCAAGTCATGGTT
CAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGC
ACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTG
GTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTC
ATGATACAGGGACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCCTTTTT
ATTCAGATAAAtcgtaatttgaaatttgaaaactcTGTGATAAAATGGGA
TTTCTAGCATTACTTATTGAAATTATTTGATAAGCATAAGCAGTTACCAT
CTCTTCCTCGGCATATTTTTTTCTCGTTGTTCATTTCAATATCCAACCCG
TAGTAACTCGTTTCGAGCTGTATAATTTTGTTTGACTTAGGACAACATCA
AACTGGTCAGAATACTTTGATCCAAGGACAGGCACTGCAAGGTCAACCTG
TATTCATCCAAGGTCAACCGAANGACCATTCTAAAACCGCTCAACTCGTA
ATACAAATGCTTGTTCAGTTAGCACTAATCATTTTCATACAACGATAAAT
ATTGTTTTGCTTCAGTCTGTATCGGGTGCAACGATAGGAGGAACTTCACA
TGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTT
TGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATA
CGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACatcatcaaat
cttttttgttggaataacaatattttgcaaaatgtaTCAAGTTATTGACT
CTAGTTGGTCTAAGTTGTCTTTGTTCCAACTGATTTTATTTGGCATTTCT
TTAATACTGTGAATTGGGCTCTGGTTCTGGTTTTCCTGGATATTAAATTG
TATGTCATCCAATACcttacttatttttcaaagtattgtaattttaaagc
ttaaagctatttgttgtttttgtaaacTTTTCCAGGTACCAGGCAATCTT
GTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACA
AATTCCTGGTGCTGGCATGGCTTCAGTTATGGTCCACGGGAAGCAAGTCA
TGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCATACCTAAC
CAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCA
AGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAA
CTGTCATGATACAGGGACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCC
TTTTTATTCAGATAAatcgtaatttttgaaatttgaaaactcTGTGATAA
AATGGGATTTCTAGCATTACTTATTGAAATTATTTGATAAGCATAAGCAG
TTACCAACTCTTCCTCGGCATATTTTTTTCTCGTTGTTCCAACCCGTAGT
AACTCGTTTCGAGCTGTATAATTTTGTTTGACTTAGGACAACATCAAACT
GGTCAGAATACTTTGATCCAAGGACAAGCACTGCAAGGTCAACCTGTATT
CATCCAAGGTCAACCGAATGGCCAAACGCAGGTAAGCTATTCAACATTTA
AATAACAGTTGACAGTTTCAAATGATTAATATGGTGAAAATATTAGTAGC
TATTTAGTACTCTACTTTTTAATGTATTTTATAAATattatttgcttttt
ctcataagGTACACCATAATATACACTGGTAGCGTTTTTCCAATTTATTA
CCAACGAATTTCTTTTACTGTACACTTGTATGATAAAAAAGGCGTCGAGT
AAGATATATACTTCGGTAATGTCAAGACGAAGCTTCATTGCATATTGTTT
GTGATTGTAGTTCATGACGAAATTATAGCCATTGTCGGAGTTCAATCACT
ATTCAAAGTATTTTTCACCCTTTCTTCTTCCTCTACAGGTTGTTCAAGGT
CAAGCAATCATGTTGCAGGGCAATCAAGGTGGACACCAGGGCCAAGTTCA
ATTGATCACAACTTCAACATCAAGCGGCGGCCAACAACTTCAAATCGTCC
CTCAAATACAAAAACAAGGTATAACTCGCCCATTTTCATCTTTCTATAAT
AATAGTACCGGAGCTTtttgtatttgtatttttttgtaatgaaactttat
caaatgcaaacttaaaatttacttttaagATTTACAATATTAGACCCTGT
TAGATTTTTTGCCCACGTCTGAAAGATCGTTGTAAAAGACCTTACAAAAA
CACTTATTATTCTTGATATTATTCTTATTTCAGCAGTAATTACAAGTTCA
GCTGGACGCACGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGT
TAACTTGATCCCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTC
AATTCACTACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGT
GCTTCTCAACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACC
TACTAAACCTTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCAT
TTCACATCTGTATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGA
AGTGTTCTGTTCTGAATGAACTACTTTTGATATATCATCAATGGCAAAAT
GTCACTTTACTAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgC
GGCATACATAGTCATAATAATGATTTCAttgtgaaaacattttttctgtt
gcaGGTGTTGTATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATC
TCTTCTGCTATAAACTACTTATTATTATGGACTGTATATACTTTTTTTAA
CTACTTTTGACACAAAATTGACAACACATTTAAATGTTTCTTTAATAATC
TTAggatattcaaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055401-exon-scaffold_253-1491911889:682253..682277TCONS_00055401-exon-scaffold_253-1491911889:682253..682277Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:682253..682277TCONS_00055401-exon-scaffold_253-1510915933:682253..682277Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:682253..682277TCONS_00055401-exon-scaffold_253-1575043694:682253..682277Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:682991..683046TCONS_00055401-exon-scaffold_253-1491911889:682991..683046Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:682991..683046TCONS_00055401-exon-scaffold_253-1510915933:682991..683046Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:682991..683046TCONS_00055401-exon-scaffold_253-1575043694:682991..683046Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:683348..683414TCONS_00055401-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:683348..683414TCONS_00055401-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:683348..683414TCONS_00055401-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:683657..683812TCONS_00055401-exon-scaffold_253-1491911889:683657..683812Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:683657..683812TCONS_00055401-exon-scaffold_253-1510915933:683657..683812Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:683657..683812TCONS_00055401-exon-scaffold_253-1575043694:683657..683812Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:684089..684163TCONS_00055401-exon-scaffold_253-1491911889:684089..684163Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:684089..684163TCONS_00055401-exon-scaffold_253-1510915933:684089..684163Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:684089..684163TCONS_00055401-exon-scaffold_253-1575043694:684089..684163Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:684846..684953TCONS_00055401-exon-scaffold_253-1491911889:684846..684953Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:684846..684953TCONS_00055401-exon-scaffold_253-1510915933:684846..684953Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:684846..684953TCONS_00055401-exon-scaffold_253-1575043694:684846..684953Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:687348..687538TCONS_00055401-exon-scaffold_253-1491911889:687348..687538Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:687348..687538TCONS_00055401-exon-scaffold_253-1510915933:687348..687538Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:687348..687538TCONS_00055401-exon-scaffold_253-1575043694:687348..687538Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:688523..688733TCONS_00055401-exon-scaffold_253-1491911889:688523..688733Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:688523..688733TCONS_00055401-exon-scaffold_253-1510915933:688523..688733Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:688523..688733TCONS_00055401-exon-scaffold_253-1575043694:688523..688733Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:689270..689499TCONS_00055401-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:689270..689499TCONS_00055401-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:689270..689499TCONS_00055401-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:689775..690220TCONS_00055401-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:689775..690220TCONS_00055401-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:689775..690220TCONS_00055401-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:690548..690675TCONS_00055401-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:690548..690675TCONS_00055401-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:690548..690675TCONS_00055401-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:690864..691034TCONS_00055401-exon-scaffold_253-1491911889:690864..691034Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:690864..691034TCONS_00055401-exon-scaffold_253-1510915933:690864..691034Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:690864..691034TCONS_00055401-exon-scaffold_253-1575043694:690864..691034Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:691283..691571TCONS_00055401-exon-scaffold_253-1491911889:691283..691571Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:691283..691571TCONS_00055401-exon-scaffold_253-1510915933:691283..691571Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:691283..691571TCONS_00055401-exon-scaffold_253-1575043694:691283..691571Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:692889..692983TCONS_00055401-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:692889..692983TCONS_00055401-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:692889..692983TCONS_00055401-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:693341..693470TCONS_00055401-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:693341..693470TCONS_00055401-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:693341..693470TCONS_00055401-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1491911889:693686..694328TCONS_00055401-exon-scaffold_253-1491911889:693686..694328Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1510915933:693686..694328TCONS_00055401-exon-scaffold_253-1510915933:693686..694328Clytia hemisphaericaexon
TCONS_00055401-exon-scaffold_253-1575043694:693686..694328TCONS_00055401-exon-scaffold_253-1575043694:693686..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682253..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.44029e-10	3.44052e-10	1.09597e-05	0	0	0	0	0	0.000184081	0	0	0	0	0	0	0	0	0	0	0	1.78712e-09	1.58959e-06	0	0	0	0
Blast
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BLAST of TCONS_00055401 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 1.623e-80
Identity = 155/393 (39.44%), Postives = 244/393 (62.09%), Query Frame = 2 
Query:   80 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1210
            +KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H1.623e-8039.44Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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