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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055632 ID=TCONS_00055632|Name=TCONS_00055632|organism=Clytia hemisphaerica|type=transcript|length=1262bp
AGATTTAGTTAGCAACACACAAACACAAGAACCACAACAACAAACAACTA
ATTTCATTGAAAACCCAATGGAAGCACATCAAGAGGTCATCCAAAATACA
CCAATCAATGTTCAAGAACAACAGAACGCACCAATCAACATGCAAGAACA
ACAAATGTTGCTACCGCTCATAGACCATGAGTACGAATTCAAACGGTTAT
CACATGCTAACAGACTATCAAGCCTTGATTCgatttttgataataatttg
GTGATTTCCCATGACAATGAGAACTTTAATGTTTTGGAAAACGACACTGT
TTTGGTGCGGTACGATAGCTCAGATTCTTATTTTGATAGAATGTAATTTT
AGGGTTGCGAGGAAAAATTTATTTACTGCTCTTCGCAGGGCAGACATTCT
GTATGGTATGGAGTACTTTCAAAAAGGATTTATACCAAGAATACGAAAAA
CTTGATTCATTTCCACCTGAGAGAGGTGGAAAACCGAGAACGTGtttcag
aaatttttgaaatattactAACAAAAGATTCATAACAAAATAGGACAAAA
GGGATACTTCAAGATCTGACCACGATGTTTTTGTCAGTTATCTTGTTTAT
TTCAGCACTGCACTATTTTCATATAGTCTttctggggggggggcgtacgg
ggtttgcgatttccgaaataccgaataattttgccaaaatttccgaactt
tcgtaaaaaaatacttgctattccgataccgatttttttgggtatttttc
ctcgttttgatttttttttcatcaaatttgattttttatgtatgaattcc
gaaaaaggggaaTAAAAACTCTATAATAccaaaatttcgaagcaaaaatt
catggatttccaaTACCgtaacaatttcagaattccgaaataccgaagga
gttttgcccgatttccgaaattctgaaataccgtacgcccccactTTCTG
AAATCGAATAATTTTAATATAGAATTTGCCAAAATGAAATTCAGATCACT
TTTTGGGCCAAGACCTTGTGTTTCTTTTTTAAGGCACATGGTCATGTAGA
CGACAAACTTCAAATGTTTATTCAACAGTGATAATCGTTAATCGATGTCA
GAATTTCACCTCTTAACTTACGATTTTGATTTGTATCGTACCATTTTAGT
TTACGTCTTCGCCTCGTCACCATCCCCCTACCCACGTCACAATTTTATTA
GTCCTTCTTAAAGTAGATATGGATTGAGTAAAATCAAAGCGAATGAGCTT
GATATTGATGGG Run BLAST on NCBI protein sequence of TCONS_00055632-protein >TCONS_00055632-protein ID=TCONS_00055632-protein|Name=TCONS_00055632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
DLVSNTQTQEPQQQTTNFIENPMEAHQEVIQNTPINVQEQQNAPINMQEQ
QMLLPLIDHEYEFKRLSHANRLSSLDSIFDNNLVISHDNENFNVLENDTV
LVRYDSSDSYFDRM Run BLAST on NCBI transcript from alignment at scaffold_253:959170..960431 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055632 ID=TCONS_00055632|Name=TCONS_00055632|organism=Clytia hemisphaerica|type=transcript|length=1262bp|location=Sequence derived from alignment at scaffold_253:959170..960431 (Clytia hemisphaerica)
CCCATCAATATCAAGCTCATTCGCTTTGATTTTACTCAATCCATATCTAC
TTTAAGAAGGACTAATAAAATTGTGACGTGGGTAGGGGGATGGTGACGAG
GCGAAGACGTAAACTAAAATGGTACGATACAAATCAAAATCGTAAGTTAA
GAGGTGAAATTCTGACATCGATTAACGATTATCACTGTTGAATAAACATT
TGAAGTTTGTCGTCTACATGACCATGTGCCTTAAAAAAGAAACACAAGGT
CTTGGCCCAAAAAGTGATCTGAATTTCATTTTGGCAAATTCTATATTAAA
ATTATTCGATTTCAGAAagtgggggcgtacggtatttcagaatttcggaa
atcgggcaaaactccttcggtatttcggaattctgaaattgttacGGTAt
tggaaatccatgaatttttgcttcgaaattttggTATTATAGAGTTTTTA
ttcccctttttcggaattcatacataaaaaatcaaatttgatgaaaaaaa
aatcaaaacgaggaaaaatacccaaaaaaatcggtatcggaatagcaagt
atttttttacgaaagttcggaaattttggcaaaattattcggtatttcgg
aaatcgcaaaccccgtacgccccccccccagaaAGACTATATGAAAATAG
TGCAGTGCTGAAATAAACAAGATAACTGACAAAAACATCGTGGTCAGATC
TTGAAGTATCCCTTTTGTCCTATTTTGTTATGAATCTTTTGTTagtaata
tttcaaaaatttctgaaaCACGTTCTCGGTTTTCCACCTCTCTCAGGTGG
AAATGAATCAAGTTTTTCGTATTCTTGGTATAAATCCTTTTTGAAAGTAC
TCCATACCATACAGAATGTCTGCCCTGCGAAGAGCAGTAAATAAATTTTT
CCTCGCAACCCTAAAATTACATTCTATCAAAATAAGAATCTGAGCTATCG
TACCGCACCAAAACAGTGTCGTTTTCCAAAACATTAAAGTTCTCATTGTC
ATGGGAAATCACcaaattattatcaaaaatcGAATCAAGGCTTGATAGTC
TGTTAGCATGTGATAACCGTTTGAATTCGTACTCATGGTCTATGAGCGGT
AGCAACATTTGTTGTTCTTGCATGTTGATTGGTGCGTTCTGTTGTTCTTG
AACATTGATTGGTGTATTTTGGATGACCTCTTGATGTGCTTCCATTGGGT
TTTCAATGAAATTAGTTGTTTGTTGTTGTGGTTCTTGTGTTTGTGTGTTG
CTAACTAAATCT Coding sequence (CDS) from alignment at scaffold_253:959170..960431 >TCONS_00055632 ID=TCONS_00055632|Name=TCONS_00055632|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_253:959170..960431 (Clytia hemisphaerica)
TTACATTCTATCAAAATAAGAATCTGAGCTATCGTACCGCACCAAAACAG
TGTCGTTTTCCAAAACATTAAAGTTCTCATTGTCATGGGAAATCACcaaa
ttattatcaaaaatcGAATCAAGGCTTGATAGTCTGTTAGCATGTGATAA
CCGTTTGAATTCGTACTCATGGTCTATGAGCGGTAGCAACATTTGTTGTT
CTTGCATGTTGATTGGTGCGTTCTGTTGTTCTTGAACATTGATTGGTGTA
TTTTGGATGACCTCTTGATGTGCTTCCATTGGGTTTTCAATGAAATTAGT
TGTTTGTTGTTGTGGTTCTTGTGTTTGTGTGTTGCTAACTAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055632-exon-scaffold_253-1491911889:959170..960431 | TCONS_00055632-exon-scaffold_253-1491911889:959170..960431 | Clytia hemisphaerica | exon |
| TCONS_00055632-exon-scaffold_253-1510915933:959170..960431 | TCONS_00055632-exon-scaffold_253-1510915933:959170..960431 | Clytia hemisphaerica | exon |
| TCONS_00055632-exon-scaffold_253-1575043694:959170..960431 | TCONS_00055632-exon-scaffold_253-1575043694:959170..960431 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:959170..960431 . |
Blast
The following BLAST results are available for this feature:
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