TCONS_00055548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055548
Unique NameTCONS_00055548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055548 ID=TCONS_00055548|Name=TCONS_00055548|organism=Clytia hemisphaerica|type=transcript|length=1685bp
GTTTGATTATTTTCCTATGATTGCTGACACGCTGTTTTCGAATTGAAAAC
ATAAATCTCTTTTTctcatctttcaattttttgtcaatttttcagatttt
tttttatgtCCTGTTGGTGGATGTTATCTTTTAGAGTGGAAATGTTTTAA
AGTTGAAAATCGAATATTGTACAGACTTTCCGTGTATTCCGGGACCTCAT
CTCAAACTTGAGCATAACCAAAAACCATGATGGCTTGATATACCAAAAGA
TTTCATATATAAAACCTTCATGTATGGCATTACTTCCAATTTCAAACCGC
ATTGCATTCATTTTGAGCACAATCTTTGCACTAGTGCATTATGGGAAAGC
TTTGAACGATAATTCAACAACAAcattaaaagaaaatgatattTGGTGTG
GAGGGAAATGGATCATCTATAAATCACAAGGTCAACTTGATGTTGATTTA
TCCATCCTCTTAAACAGTTCAATTGTTGTTACCAATCCTCCATATGAATG
TCATTTCAAGATACGTGCCAATACACCGATATCATTTCAATGGTTTAAGT
TTTCCAGGAATTTTACTGGCAAGTATGGCGATTGTAATCAAACCAATAAC
ATTGTCAAAGTTTGGACAGGATGCCAAGACCGCGAAGAACATTGTTTCAC
CAACTACATGCAATCGAACTATGAACTTCACGCGTCTGATGGATGTTACG
ACATCGAGCTATCCACTGATATTAAGGACAAAATATTTCTCGCCAACTTT
AAACCAGCGTGGTTCAATACTGCCAGTACTCCTTACGACGATGACTCAAC
GAGCAGTTCGTTCTCCAATCATCTTGTCTTTATCATAATCGGCCCCATCG
TCTTTCTGATCGCTGTCATTGGAATCACATTCGCTTTGATGCGTCAAGCA
CAACATCGCCGATTAGTGGACACACTACAAGTGGAACAAAACCTCATCTC
ACAACAAACTTCATCAAGTAGTGAAGCTCAAGAGGAGTGTCCAAACTCGC
CCACTTCCTTACTACAAAAAACTGAACGCCAGCTTTCGAACGACAGCAAA
GCAAGATACTCGCAACGTTTCTCACAACAATTCCAGGAAGGCATGACAGA
TCACTATTATTACCCTGCCAAACGAATTTCCTATATTTCTAATCGCTATT
CAAGAAATATGCCGGCTGAGTATCGAGTATCGCGCGTTCGTTGCTCGCGC
TCATATTCTGCAGGTGAATCGTCAATGCCGCGACCACCAGGTGAGATCGC
GCGTCGATCAATTGCTAGAAGATCACCAACGCACTCTGCTGATTGGAGCA
ATAAAGTCCAACTCGTTGACGTGCATAGTCCGAAAGTTCAACACCCTCAA
AATGTTGTACATCAATTGCAACATCAAACTTCATACCATCAACAACAACC
TATTCTTCATTCTCAACAATCAGTTCAACATCTGCAACACCAAACTTCTT
ATCAACAACAACTTAGCAACAATCCTCAACAATTGCAGCACCAAAACAGT
CAATTCCAACATCCAACATCACATGATCAACCACAGCCAAACACTAATTA
TGATCCACCGCAACAACTACCGCTAACACCTTCATCAACGATGATTTCTC
CACCTCAAATTTCACCAACGGCTATCCAAGAAGAGGAAGAAGCTCCACCA
TATGAAAAAGTTATTGCACAAGGTAACGCTGATAA
Run BLAST on NCBI

protein sequence of TCONS_00055548-protein

>TCONS_00055548-protein ID=TCONS_00055548-protein|Name=TCONS_00055548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp
MALLPISNRIAFILSTIFALVHYGKALNDNSTTTLKENDIWCGGKWIIYK
SQGQLDVDLSILLNSSIVVTNPPYECHFKIRANTPISFQWFKFSRNFTGK
YGDCNQTNNIVKVWTGCQDREEHCFTNYMQSNYELHASDGCYDIELSTDI
KDKIFLANFKPAWFNTASTPYDDDSTSSSFSNHLVFIIIGPIVFLIAVIG
ITFALMRQAQHRRLVDTLQVEQNLISQQTSSSSEAQEECPNSPTSLLQKT
ERQLSNDSKARYSQRFSQQFQEGMTDHYYYPAKRISYISNRYSRNMPAEY
RVSRVRCSRSYSAGESSMPRPPGEIARRSIARRSPTHSADWSNKVQLVDV
HSPKVQHPQNVVHQLQHQTSYHQQQPILHSQQSVQHLQHQTSYQQQLSNN
PQQLQHQNSQFQHPTSHDQPQPNTNYDPPQQLPLTPSSTMISPPQISPTA
IQEEEEAPPYEKVIAQGNAD
Run BLAST on NCBI

transcript from alignment at scaffold_253:960770..963578-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055548 ID=TCONS_00055548|Name=TCONS_00055548|organism=Clytia hemisphaerica|type=transcript|length=2809bp|location=Sequence derived from alignment at scaffold_253:960770..963578- (Clytia hemisphaerica)
GTTTGATTATTTTCCTATGATTGCTGACACGCTGTTTTCGAATTGAAAAC
ATAAATCTCTTTTTCTCATCTTTCAATTTTTTGTCAATTTTTCAGATTTT
TTTTTATGTCCTGTTGGTGGATGTTATCTTTTAGAGTGGAAATGTTTTAA
AGTTGAAAATCGAATATTGTACAGACTTTCCGTGTATTCCGGGACCTCAT
CTCAAACTTGAGCATAACCAAAAACCATGATGGCTTGATATACCAAAAGA
TTTCATATATAAAACCTTCATGTATGGCATTACTTCCAATTTCAAACCGC
ATTGCATTCATTTTGAGCACAATCTTTGCACTAGTGCATTATGGGAAAGC
TTTGAACGATAATTCAACAACAACATTAAAAGAAAATGATATTTGGTGTG
GAGGGAAATGGATCATCTATAAATCACAAGGTCAACTTGATGTTGATTTA
TCCATCCTCTTAAACAGTTCAATTGTTGTTACCAATCCTCCATATGAATG
TCATTTCAAGATACGTGCCAATACACCGATATCATTTCAATGGTTTAAGT
TTTCCAGGAATTTTACTGGCAAGTATGGCGATTGTAATCAAACCAATAAC
ATTGTCAAAGTTTGGACAGGGTATGTATCTATATTCACTATATTGCATTG
TCCATCGAAATGTCATTTTGTTAAGCTTAACTTCGGGAGGGGTACTAAAA
ATGGGTGTTGGTATGTGTGGACGGTAAGGGTCGGTTTTTATCACCTTTCA
AGGTCTCTCGAAGGGTTACAAAAATCAGAAAGTTTTAAATTGGTATTGGT
AGTTTGTATTTGAAATTACCATTTTGGGTCTGATTTACATGAATTGTATA
TATATTGTATACTGTATTGTGTTTTTTGTCTCCTTTTCAGAGAGATTTTG
GAGACTAAAGTGGAAAAAACGCTGAAATTTAATAAACCAATAGACATTTT
GGAAGATATTTTTTCAACGAATGAATAAATTTGTTTTACTCGATAGTGTC
CTTATCATATGTTTTAACATTAAAGCAGTTTCTTTCCCCACAATTTCGAG
CCTGGCAAATAACTTTCATTGGGTCCGTTTGTAGACAGATTTTTCCGGTA
TAACAGAGAATTCTCGCTAATATTTTCTGATACTTGATATTCGACTGTAC
CATATTTATCTTCTTTCTATTTTATATACCATAATGAAACGGGATTTGAC
TTTCTAAATTTCCCCTTTCTTTTGTCAAAGCATGACAGCCATCTTGTCGT
CAACATTTCAAAACAAAAAAATGTCATCTCCATGAACAAGAATTCTCTCT
TCTTCTTTTCTTCACTCTTTGTTTTCTTATTATTTTTCGTGAGTCATTCT
TTCAACATAACATTTCTAGAACATTTTCTCATTAAAATAATCACCATATC
AAGTCAAAATATGTCATGTAATTTATGTAAAATATGTTTGTAAATTAATC
GATTTTCCGTCCATGACCCCTTCCCAAAACGGCTGCGACTTTTTGGGTTT
CTTTTTAACTGTAGAAATCTCTTTATACAAACTTCACTTTATTCCCTTCC
CTTAGATGCCAAGACCGCGAAGAACATTGTTTCACCAACTACATGCAATC
GAACTATGAACTTCACGCGTCTGATGGATGTTACGACATCGAGCTATCCA
CTGATATTAAGGACAAAATATTTCTCGCCAACTTTAAACCAGCGTGGTTC
AATACTGCCAGTAGTAAGTTTAGGTCACCATAACTTTTAAATTACTCGAT
ACTTTGATTAAGGCTCTAATAAAATGAGACAGACTTTCAGCTCAATAAAT
TAATTTCTGGAAGTCAAGCAAAGCAGTGTATTTTTATGAGAATATTTTTT
TATTATAAGCTTAACAAATATCTTAGAAAATTAACAAATACTTTTCCCTT
AGCTCCTTACGACGATGACTCAACGAGCAGTTCGTTCTCCAATCATCTTG
TCTTTATCATAATCGGCCCCATCGTCTTTCTGATCGCTGTCATTGGAATC
ACATTCGCTTTGATGCGTCAAGCACAACATCGCCGATTAGTGGACACACT
ACAAGTGGAACAAAACCTCATCTCACAACAAACTTCATCAAGTAGTGAAG
CTCAAGAGGAGTGTCCAAACTCGCCCACTTCCTTACTACAAAAAACTGAA
CGCCAGCTTTCGAACGACAGCAAAGCAAGATACTCGCAACGTTTCTCACA
ACAATTCCAGGAAGGCATGACAGATCACTATTATTACCCTGCCAAACGAA
TTTCCTATATTTCTAATCGCTATTCAAGAAATATGCCGGCTGAGTATCGA
GTATCGCGCGTTCGTTGCTCGCGCTCATATTCTGCAGGTGAATCGTCAAT
GCCGCGACCACCAGGTGAGATCGCGCGTCGATCAATTGCTAGAAGATCAC
CAACGCACTCTGCTGATTGGAGCAATAAAGTCCAACTCGTTGACGTGCAT
AGTCCGAAAGTTCAACACCCTCAAAATGTTGTACATCAATTGCAACATCA
AACTTCATACCATCAACAACAACCTATTCTTCATTCTCAACAATCAGTTC
AACATCTGCAACACCAAACTTCTTATCAACAACAACTTAGCAACAATCCT
CAACAATTGCAGCACCAAAACAGTCAATTCCAACATCCAACATCACATGA
TCAACCACAGCCAAACACTAATTATGATCCACCGCAACAACTACCGCTAA
CACCTTCATCAACGATGATTTCTCCACCTCAAATTTCACCAACGGCTATC
CAAGAAGAGGAAGAAGCTCCACCATATGAAAAAGTTATTGCACAAGGTAA
CGCTGATAA

Coding sequence (CDS) from alignment at scaffold_253:960770..963578-

>TCONS_00055548 ID=TCONS_00055548|Name=TCONS_00055548|organism=Clytia hemisphaerica|type=CDS|length=4230bp|location=Sequence derived from alignment at scaffold_253:960770..963578- (Clytia hemisphaerica)
CTCCTTACGACGATGACTCAACGAGCAGTTCGTTCTCCAATCATCTTGTC
TTTATCATAATCGGCCCCATCGTCTTTCTGATCGCTGTCATTGGAATCAC
ATTCGCTTTGATGCGTCAAGCACAACATCGCCGATTAGTGGACACACTAC
AAGTGGAACAAAACCTCATCTCACAACAAACTTCATCAAGTAGTGAAGCT
CAAGAGGAGTGTCCAAACTCGCCCACTTCCTTACTACAAAAAACTGAACG
CCAGCTTTCGAACGACAGCAAAGCAAGATACTCGCAACGTTTCTCACAAC
AATTCCAGGAAGGCATGACAGATCACTATTATTACCCTGCCAAACGAATT
TCCTATATTTCTAATCGCTATTCAAGAAATATGCCGGCTGAGTATCGAGT
ATCGCGCGTTCGTTGCTCGCGCTCATATTCTGCAGGTGAATCGTCAATGC
CGCGACCACCAGGTGAGATCGCGCGTCGATCAATTGCTAGAAGATCACCA
ACGCACTCTGCTGATTGGAGCAATAAAGTCCAACTCGTTGACGTGCATAG
TCCGAAAGTTCAACACCCTCAAAATGTTGTACATCAATTGCAACATCAAA
CTTCATACCATCAACAACAACCTATTCTTCATTCTCAACAATCAGTTCAA
CATCTGCAACACCAAACTTCTTATCAACAACAACTTAGCAACAATCCTCA
ACAATTGCAGCACCAAAACAGTCAATTCCAACATCCAACATCACATGATC
AACCACAGCCAAACACTAATTATGATCCACCGCAACAACTACCGCTAACA
CCTTCATCAACGATGATTTCTCCACCTCAAATTTCACCAACGGCTATCCA
AGAAGAGGAAGAAGCTCCACCATATGAAAAAGTTATTGCACAAGGTAACG
CTGATATGCCAAGACCGCGAAGAACATTGTTTCACCAACTACATGCAATC
GAACTATGAACTTCACGCGTCTGATGGATGTTACGACATCGAGCTATCCA
CTGATATTAAGGACAAAATATTTCTCGCCAACTTTAAACCAGCGTGGTTC
AATACTGCCAGTAATGGCATTACTTCCAATTTCAAACCGCATTGCATTCA
TTTTGAGCACAATCTTTGCACTAGTGCATTATGGGAAAGCTTTGAACGAT
AATTCAACAACAACATTAAAAGAAAATGATATTTGGTGTGGAGGGAAATG
GATCATCTATAAATCACAAGGTCAACTTGATGTTGATTTATCCATCCTCT
TAAACAGTTCAATTGTTGTTACCAATCCTCCATATGAATGTCATTTCAAG
ATACGTGCCAATACACCGATATCATTTCAATGGTTTAAGTTTTCCAGGAA
TTTTACTGGCAAGTATGGCGATTGTAATCAAACCAATAACATTGTCAAAG
TTTGGACAGGCTCCTTACGACGATGACTCAACGAGCAGTTCGTTCTCCAA
TCATCTTGTCTTTATCATAATCGGCCCCATCGTCTTTCTGATCGCTGTCA
TTGGAATCACATTCGCTTTGATGCGTCAAGCACAACATCGCCGATTAGTG
GACACACTACAAGTGGAACAAAACCTCATCTCACAACAAACTTCATCAAG
TAGTGAAGCTCAAGAGGAGTGTCCAAACTCGCCCACTTCCTTACTACAAA
AAACTGAACGCCAGCTTTCGAACGACAGCAAAGCAAGATACTCGCAACGT
TTCTCACAACAATTCCAGGAAGGCATGACAGATCACTATTATTACCCTGC
CAAACGAATTTCCTATATTTCTAATCGCTATTCAAGAAATATGCCGGCTG
AGTATCGAGTATCGCGCGTTCGTTGCTCGCGCTCATATTCTGCAGGTGAA
TCGTCAATGCCGCGACCACCAGGTGAGATCGCGCGTCGATCAATTGCTAG
AAGATCACCAACGCACTCTGCTGATTGGAGCAATAAAGTCCAACTCGTTG
ACGTGCATAGTCCGAAAGTTCAACACCCTCAAAATGTTGTACATCAATTG
CAACATCAAACTTCATACCATCAACAACAACCTATTCTTCATTCTCAACA
ATCAGTTCAACATCTGCAACACCAAACTTCTTATCAACAACAACTTAGCA
ACAATCCTCAACAATTGCAGCACCAAAACAGTCAATTCCAACATCCAACA
TCACATGATCAACCACAGCCAAACACTAATTATGATCCACCGCAACAACT
ACCGCTAACACCTTCATCAACGATGATTTCTCCACCTCAAATTTCACCAA
CGGCTATCCAAGAAGAGGAAGAAGCTCCACCATATGAAAAAGTTATTGCA
CAAGGTAACGCTGATATGCCAAGACCGCGAAGAACATTGTTTCACCAACT
ACATGCAATCGAACTATGAACTTCACGCGTCTGATGGATGTTACGACATC
GAGCTATCCACTGATATTAAGGACAAAATATTTCTCGCCAACTTTAAACC
AGCGTGGTTCAATACTGCCAGTAATGGCATTACTTCCAATTTCAAACCGC
ATTGCATTCATTTTGAGCACAATCTTTGCACTAGTGCATTATGGGAAAGC
TTTGAACGATAATTCAACAACAACATTAAAAGAAAATGATATTTGGTGTG
GAGGGAAATGGATCATCTATAAATCACAAGGTCAACTTGATGTTGATTTA
TCCATCCTCTTAAACAGTTCAATTGTTGTTACCAATCCTCCATATGAATG
TCATTTCAAGATACGTGCCAATACACCGATATCATTTCAATGGTTTAAGT
TTTCCAGGAATTTTACTGGCAAGTATGGCGATTGTAATCAAACCAATAAC
ATTGTCAAAGTTTGGACAGGCTCCTTACGACGATGACTCAACGAGCAGTT
CGTTCTCCAATCATCTTGTCTTTATCATAATCGGCCCCATCGTCTTTCTG
ATCGCTGTCATTGGAATCACATTCGCTTTGATGCGTCAAGCACAACATCG
CCGATTAGTGGACACACTACAAGTGGAACAAAACCTCATCTCACAACAAA
CTTCATCAAGTAGTGAAGCTCAAGAGGAGTGTCCAAACTCGCCCACTTCC
TTACTACAAAAAACTGAACGCCAGCTTTCGAACGACAGCAAAGCAAGATA
CTCGCAACGTTTCTCACAACAATTCCAGGAAGGCATGACAGATCACTATT
ATTACCCTGCCAAACGAATTTCCTATATTTCTAATCGCTATTCAAGAAAT
ATGCCGGCTGAGTATCGAGTATCGCGCGTTCGTTGCTCGCGCTCATATTC
TGCAGGTGAATCGTCAATGCCGCGACCACCAGGTGAGATCGCGCGTCGAT
CAATTGCTAGAAGATCACCAACGCACTCTGCTGATTGGAGCAATAAAGTC
CAACTCGTTGACGTGCATAGTCCGAAAGTTCAACACCCTCAAAATGTTGT
ACATCAATTGCAACATCAAACTTCATACCATCAACAACAACCTATTCTTC
ATTCTCAACAATCAGTTCAACATCTGCAACACCAAACTTCTTATCAACAA
CAACTTAGCAACAATCCTCAACAATTGCAGCACCAAAACAGTCAATTCCA
ACATCCAACATCACATGATCAACCACAGCCAAACACTAATTATGATCCAC
CGCAACAACTACCGCTAACACCTTCATCAACGATGATTTCTCCACCTCAA
ATTTCACCAACGGCTATCCAAGAAGAGGAAGAAGCTCCACCATATGAAAA
AGTTATTGCACAAGGTAACGCTGATATGCCAAGACCGCGAAGAACATTGT
TTCACCAACTACATGCAATCGAACTATGAACTTCACGCGTCTGATGGATG
TTACGACATCGAGCTATCCACTGATATTAAGGACAAAATATTTCTCGCCA
ACTTTAAACCAGCGTGGTTCAATACTGCCAGTAATGGCATTACTTCCAAT
TTCAAACCGCATTGCATTCATTTTGAGCACAATCTTTGCACTAGTGCATT
ATGGGAAAGCTTTGAACGATAATTCAACAACAACATTAAAAGAAAATGAT
ATTTGGTGTGGAGGGAAATGGATCATCTATAAATCACAAGGTCAACTTGA
TGTTGATTTATCCATCCTCTTAAACAGTTCAATTGTTGTTACCAATCCTC
CATATGAATGTCATTTCAAGATACGTGCCAATACACCGATATCATTTCAA
TGGTTTAAGTTTTCCAGGAATTTTACTGGCAAGTATGGCGATTGTAATCA
AACCAATAACATTGTCAAAGTTTGGACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034935XLOC_034935Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055548-proteinTCONS_00055548-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055548-exon-scaffold_253-1575043694:962959..963578TCONS_00055548-exon-scaffold_253-1575043694:962959..963578Clytia hemisphaericaexon
TCONS_00055548-exon-scaffold_253-1575043694:961866..962023TCONS_00055548-exon-scaffold_253-1575043694:961866..962023Clytia hemisphaericaexon
TCONS_00055548-exon-scaffold_253-1575043694:960770..961676TCONS_00055548-exon-scaffold_253-1575043694:960770..961676Clytia hemisphaericaexon
TCONS_00055548-exon-scaffold_253-1510915933:962959..963578TCONS_00055548-exon-scaffold_253-1510915933:962959..963578Clytia hemisphaericaexon
TCONS_00055548-exon-scaffold_253-1510915933:961866..962023TCONS_00055548-exon-scaffold_253-1510915933:961866..962023Clytia hemisphaericaexon
TCONS_00055548-exon-scaffold_253-1510915933:960770..961676TCONS_00055548-exon-scaffold_253-1510915933:960770..961676Clytia hemisphaericaexon
TCONS_00055548-exon-scaffold_253-1491911889:962959..963578TCONS_00055548-exon-scaffold_253-1491911889:962959..963578Clytia hemisphaericaexon
TCONS_00055548-exon-scaffold_253-1491911889:961866..962023TCONS_00055548-exon-scaffold_253-1491911889:961866..962023Clytia hemisphaericaexon
TCONS_00055548-exon-scaffold_253-1491911889:960770..961676TCONS_00055548-exon-scaffold_253-1491911889:960770..961676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:960770..963578 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0961456	0	0.0272153	0.0333049	0.259316	0.1793	0.773089	0.83232	3.56488	4.01426	2.92218	3.12158	2.98936	3.12108	0.122838	0.366178	6.11693	9.46922	3.32166	5.56141	12.8284	14.1128	2.97644	5.13643	14.0647	15.4084	6.36103	8.23081	0.213428	0.380537
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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