TCONS_00055441 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055441
Unique NameTCONS_00055441
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2857

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055441 ID=TCONS_00055441|Name=TCONS_00055441|organism=Clytia hemisphaerica|type=transcript|length=2857bp
GTTTTAATTCTCTTCCTTTTTAACTCCTTGAACATCTTCCAAATTTTTAC
TAGGGAAGGCATATTCAAGATTGACAAGTGCCTTGTCCTTGTAATCTTGA
AAAGTGGTAGATATGGATAATCAGAGATGATTTGCAAACCTGGTTTGGCC
ACCTttctggttggtattttactaGCCTGGGGCCACTTATTGCTTCTTAA
TAGACTGGATATTGTGCCTGGTATGGCACAAAACAAATCCATACCAAATT
ATTTCCTAATATTTTTATCAtggttttgaaaactttgatggAGTTTCGAA
ATAAATTATATTGTTTTGGTCATTGGtgtttgttttgtgtttttgaaaac
GAATGCTCAAGTCTAATTGACTGGACTCAACATCAAAATGGAAAGAAGGA
AAGTTcagtcaaaaaatgaaggtaataaaaataGACGGAGAGAAAACATC
TTGGTAACAACCTAAATGATCAttcaaatcttttataaatctattcaaag
tgGCTTTTTTTATGTGCCATCATTGAGAACAAAAGAAATCATTGTTTGAA
ACCAGGTTTGTTCTATAATTgttgaaagttggagaaaattcTACCATTGC
AGAAATTTTCAACAGACAATTAATGGACGGTGTCTATCAAACAAGTTTGA
GCAAAAATCCCAATCAAGCCAAATGAATGTAAGCGAACGCGACCCCTTAT
GATGGCCAATATCCTATAAAACCATTACAAGTGTGTCTTCACCCAACCTC
TTCAAACTACAACCTTCATCCGCTTGAGTCACAAATACCAACACTTGAAG
ATTTGAAGATATCAATCTGACTATCGAggaatttgtcaaagaaatcaGTA
CACTGTCACCAACTTCAGCACCTGGACCTTATGGTTTTCCAGCTATTCTT
CAACTAAAAACAATAGATAACATTGCTCTACCACTTTCAATCATCTGGAG
AAACATACCTAACATAGGAATCactccaaaacttttaaaaactggACATA
TATCCCCAGTTTACAAGAAAGTGAATCAAGGTCTTGCTGAAAACTATAGA
CCCGTTGCCATCCCACGTTTCAAAGGTCTTTAAAAAATTGTGCGAGCCAA
GATGCAGAATCATCTAGAAGAAAACAATCTGTATAACAATAATCAACATG
GCTTTAGGAAAGGCCACTTATGTCTTAGTCAATTGCTTCAACACACCAAA
AGACTGATTCATTACCTTGAGAATGGAAACAACATTGAAGTTATCTATTT
TGACTTTTAGTAAAGCTTTTGATAGAGTAGATCATCACAATTTTGTTGCA
CAAGCTTcagaaaaatggcaaaaacggTAAACTCCTTGAATGGATCAGAT
CTTTTAAGACTCATCGAACCCAGAGAGTTTCATTAACTCAACCTTGTCCT
CAGAAATAGAGGTTATTTCATGTGTGCCACAAGGATGTGCTGGGACCGCT
ATTGTTCCCAATCATGATTCACGATATTGATAACAACATCATTCTATTTT
GGCATTGTTTGCAGACACCCGattgatgaaaaaaatatccaaaCCGGAGG
ATGTTTCTGTCCATTTATAGACAGTGGCTAGATCATTTTATAGATGATTT
ATCATCTAGACACTGTCTATAAATGGACAGAAGACAACAACATGCAACTG
AATGGTCTTAAATTTGAGCACCTTGCCTACAGGAAAAATGACGCCCTTAA
AGCAAAGTTCTCACTATTTTTATGACATAGCAACATATCAATAAAAAATA
AGGGCGAAGTTAAAGACCTTTGAGTCACCCTAGACACTCAGTTGACTTAT
GAGGAGCATATCAGCATATCcaagatcaaatttaaaaaaagtaaaaaatg
caTGGATATACCGCACATTCAaatcaaagaaaagtgaaacTATGTTAACT
TTATGGAAAGAACTAGCCATCCCTCATTTGGACTATGTTCTCAATTCTGG
TCACCCTGCTGGAAACGTGGTCTTGTCCAGCAACTGGAAGAATTTCAGAA
AACATATTTACATGGTATTCTATCCCTCAGGCATCTTAATTATTGTATAC
TGTATAGCCTTGAAAGACGGAGAGAGCGTTATCAAATAATTTACACCTGG
AACGTCATTGAAGGCAACGTCTCAAATTTTAATtatgacaaaagaaaaga
aggcATTTCCTGCCATAAAAGCCAGTAAAATGTTTATACTTCGAAAccac
acgaacagagtagacgggtctcccagctaccgtaacttggtttaatatcg
acatccctcgtctaattttgacacccttctttagagaaaggattaatatg
aaagcttgaatcactgattgaaaaaggattattcctctctgaccactaag
caaagaaaaacagtttcaacccaAGTTACGGTATCATGATATTAAATACA
AAAATATCTGGAGTGGAGGGGAAGTCTTTCCTAAGAGGGCCCTCTTGGTT
CGCTTGTTCAACACCCTTGCCAGACCAATAAAAAAGAGATTTGACAAACT
GCCTCAAAGAAGTATTCAGCAAAAAACACTTAGACACCTTCTTCACAACT
GTTCCGGGCGAACCACTGCTTGCCCACTATTTCACTCTTTAGGCAAGCTT
ACTCCAACTTTCAACAGCCTCAAGGAAATGTTAAAGCATCGGACTCAACG
AGTTGGATGAGCTGCTCAATCAAGCAGAAGCCACAAATAGGTACAAATAG
GTAGGTTGTGTTCAATTGATTCCACGTTCGATTCGTTTGATTGACTCTGT
CCGGCTATATCAAAAAAACAGTAAAGAAAGATGCAAACATAATTTCTTAT
GAGTGCTGTTATAACAAGGTATACTGGTATATGTGTCCTGGTCGCTGGTG
TCGGCTG
Run BLAST on NCBI

transcript from alignment at scaffold_253:1012712..1015629+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055441 ID=TCONS_00055441|Name=TCONS_00055441|organism=Clytia hemisphaerica|type=transcript|length=2918bp|location=Sequence derived from alignment at scaffold_253:1012712..1015629+ (Clytia hemisphaerica)
GTTTTAATTCTCTTCCTTTTTAACTCCTTGAACATCTTCCAAATTTTTAC TAGGGAAGGCATATTCAAGATTGACAAGTGCCTTGTCCTTGTAATCTTGA AAAGTGGTAGATATGGATAATCAGAGATGATTTGCAAACCTGGTTTGGCC ACCTttctggttggtattttactaGCCTGGGGCCACTTATTGCTTCTTAA TAGACTGGATATTGTGCCTGGTATGGCACAAAACAAATCCATACCAAATT ATTTCCTAATATTTTTATCAtggttttgaaaactttgatggAGTTTCGAA ATAAATTATATTGTTTTGGTCATTGGtgtttgttttgtgtttttgaaaac GAATGCTCAAGTCTAATTGACTGGACTCAACATCAAAATGGAAAGAAGGA AAGTTcagtcaaaaaatgaaggtaataaaaataGACGGAGAGAAAACATC TTGGTAACAACCTAAATGATCAttcaaatcttttataaatctattcaaag tgGCTTTTTTTATGTGCCATCATTGAGAACAAAAGAAATCATTGTTTGAA ACCAGGTTTGTTCTATAATTgttgaaagttggagaaaattcTACCATTGC AGAAATTTTCAACAGACAATTAATGGACGGTGTCTATCAAACAAGTTTGA GCAAAAATCCCAATCAAGCCAAATGAATGTAAGCGAACGCGACCCCTTAT GATGGCCAATATCCTATAAAACCATTACAAGTGTGTCTTCACCCAACCTC TTCAAACTACAACCTTCATCCGCTTGAGTCACAAATACCAACACTTGAAG ATATCAATCTGACTATCNTTCAAAACTACGACCTTCATCCGCTTGAGTCA CAAATACCAACACTTGAAGATATCAATCTGACTATCGAggaatttgtcaa agaaatcaGTACACTGTCACCAACTTCAGCACCTGGACCTTATGGTTTTC CAGCTATTCTTCAACTAAAAACAATAGATAACATTGCTCTACCACTTTCA ATCATCTGGAGAAACATACCTAACATAGGAATCactccaaaacttttaaa aactggACATATATCCCCAGTTTACAAGAAAGTGAATCAAGGTCTTGCTG AAAACTATAGACCCGTTGCCATCCCACGTTTCAAAGGTCTTTAAAAAATT GTGCGAGCCAAGATGCAGAATCATCTAGAAGAAAACAATCTGTATAACAA TAATCAACATGGCTTTAGGAAAGGCCACTTATGTCTTAGTCAATTGCTTC AACACACCAAAAGACTGATTCATTACCTTGAGAATGGAAACAACATTGAA GTTATCTATTTTGACTTTTAGTAAAGCTTTTGATAGAGTAGATCATCACA ATTTTGTTGCACAAGCTTcagaaaaatggcaaaaacggTAAACTCCTTGA ATGGATCAGATCTTTTAAGACTCATCGAACCCAGAGAGTTTCATTAACTC AACCTTGTCCTCAGAAATAGAGGTTATTTCATGTGTGCCACAAGGATGTG CTGGGACCGCTATTGTTCCCAATCATGATTCACGATATTGATAACAACAT CATTCTATTTTGGCATTGTTTGCAGACACCCGattgatgaaaaaaatatc caaaCCGGAGGATGTTTCTGTCCATTTATAGACAGTGGCTAGATCATTTT ATAGATGATTTATCATCTAGACACTGTCTATAAATGGACAGAAGACAACA ACATGCAACTGAATGGTCTTAAATTTGAGCACCTTGCCTACAGGAAAAAT GACGCCCTTAAAGCAAAGTTCTCACTATTTTTATGACATAGCAACATATC AATAAAAAATAAGGGCGAAGTTAAAGACCTTTGAGTCACCCTAGACACTC AGTTGACTTATGAGGAGCATATCAGCATATCcaagatcaaatttaaaaaa agtaaaaaatgcaTGGATATACCGCACATTCAaatcaaagaaaagtgaaa cTATGTTAACTTTATGGAAAGAACTAGCCATCCCTCATTTGGACTATGTT CTCAATTCTGGTCACCCTGCTGGAAACGTGGTCTTGTCCAGCAACTGGAA GAATTTCAGAAAACATATTTACATGGTATTCTATCCCTCAGGCATCTTAA TTATTGTATACTGTATAGCCTTGAAAGACGGAGAGAGCGTTATCAAATAA TTTACACCTGGAACGTCATTGAAGGCAACGTCTCAAATTTTAATtatgac aaaagaaaagaaggcATTTCCTGCCATAAAAGCCAGTAAAATGTTTATAC TTCGAAAccacacgaacagagtagacgggtctcccagctaccgtaacttg gtttaatatcgacatccctcgtctaattttgacacccttctttagagaaa ggattaatatgaaagcttgaatcactgattgaaaaaggattattcctctc tgaccactaagcaaagaaaaacagtttcaacccaAGTTACGGTATCATGA TATTAAATACAAAAATATCTGGAGTGGAGGGGAAGTCTTTCCTAAGAGGG CCCTCTTGGTTCGCTTGTTCAACACCCTTGCCAGACCAATAAAAAAGAGA TTTGACAAACTGCCTCAAAGAAGTATTCAGCAAAAAACACTTAGACACCT TCTTCACAACTGTTCCGGGCGAACCACTGCTTGCCCACTATTTCACTCTT TAGGCAAGCTTACTCCAACTTTCAACAGCCTCAAGGAAATGTTAAAGCAT CGGACTCAACGAGTTGGATGAGCTGCTCAATCAAGCAGAAGCCACAAATA GGTACAAATAGGTAGGTTGTGTTCAATTGATTCCACGTTCGATTCGTTTG ATTGACTCTGTCCGGCTATATCAAAAAAACAGTAAAGAAAGATGCAAACA TAATTTCTTATGAGTGCTGTTATAACAAGGTATACTGGTATATGTGTCCT GGTCGCTGGTGTCGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034888XLOC_034888Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055441-exon-scaffold_253-1491911889:1012712..1013513TCONS_00055441-exon-scaffold_253-1491911889:1012712..1013513Clytia hemisphaericaexon
TCONS_00055441-exon-scaffold_253-1510915933:1012712..1013513TCONS_00055441-exon-scaffold_253-1510915933:1012712..1013513Clytia hemisphaericaexon
TCONS_00055441-exon-scaffold_253-1575043694:1012712..1013513TCONS_00055441-exon-scaffold_253-1575043694:1012712..1013513Clytia hemisphaericaexon
TCONS_00055441-exon-scaffold_253-1491911889:1013575..1015629TCONS_00055441-exon-scaffold_253-1491911889:1013575..1015629Clytia hemisphaericaexon
TCONS_00055441-exon-scaffold_253-1510915933:1013575..1015629TCONS_00055441-exon-scaffold_253-1510915933:1013575..1015629Clytia hemisphaericaexon
TCONS_00055441-exon-scaffold_253-1575043694:1013575..1015629TCONS_00055441-exon-scaffold_253-1575043694:1013575..1015629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1012712..1015629 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (0.610768 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0962911 0 0.0719394 0.102238 0 0 0 0 0 0 0.0622354 0.233915 0.152719 0.509384 0.0915336 0 0 0.0552938 0.130358 0.333749 0.0734568 0.169888 0 0 0.079249 0.132974 0.169927 0.610768 0.355089 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200240026002800Sequence
Match NameE-valueIdentityDescription
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