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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055566 ID=TCONS_00055566|Name=TCONS_00055566|organism=Clytia hemisphaerica|type=transcript|length=665bp
CATAGCCTTCATCAATTCAGTTATTAAAGACTTCGCTATAAACCTGAAAA
ATGAAGGTGTTTTTGATTATGGTATTTTCTTGCTATTTAGTGCTGCAAAC
TAAAGGATTGCCTAAACAGAAGACTGGGAGCGCGAAGTTGTACTCCAATA
CTATGCAACCGTGTAAAGCAACCTTGCTACAGTCACACAAACCATGCTTT
CCAATGAACTTGCACGAAATAGTTCTCAAGTACAGAAGCAGCGACAGAAA
GTCATCATCAAGTTCACGTGGAGGAATGAGACGAGCAAGAAGGAAGAata
agaaacaaaaacatcacAATCACGTTAAAAGGAGGAAAACAACCAAAGTG
CaatgaaattattttcacaACCAACTATAAAGCTTATGTCAGGATAAAGT
TTGACTTTTATTTATATGCACTTATAATTTTGAACGTATTATCTTTAAAG
TATTTAAACCGAGAAGAAAGTTTCTCATATCTGTAATGAAACGTGTAGTT
AAAAAGAAGGAGCTTaaagtcaataaattttgtttgatatcttttgattg
aatgaatatttttgaaaaaatttttgacagtgataatgatctaagattga
agaatcactcctgtgaaaatgataattataccacatttctacaagaagtt
gatttttttcttctt Run BLAST on NCBI protein sequence of TCONS_00055566-protein >TCONS_00055566-protein ID=TCONS_00055566-protein|Name=TCONS_00055566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MKVFLIMVFSCYLVLQTKGLPKQKTGSAKLYSNTMQPCKATLLQSHKPCF
PMNLHEIVLKYRSSDRKSSSSSRGGMRRARRKNKKQKHHNHVKRRKTTKV
Q Run BLAST on NCBI transcript from alignment at scaffold_253:1143260..1145449- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055566 ID=TCONS_00055566|Name=TCONS_00055566|organism=Clytia hemisphaerica|type=transcript|length=2190bp|location=Sequence derived from alignment at scaffold_253:1143260..1145449- (Clytia hemisphaerica)
CATAGCCTTCATCAATTCAGTTATTAAAGACTTCGCTATAAACCTGAAAA
ATGAAGGTGTTTTTGATTATGGTATTTTCTTGCTATTTAGTGCTGCAAAC
TAAAGGTGAAGAATAATCTGTCTCTATAGTTTTTTCTTAAATCTAGTACT
AGTCAAGGGACTCTTTCCCAGGCCTTGCAACTGTGGTTGGTCGCTAAGGC
GCTAAAAATTTCATTTTTGAATCTCTACACTCCCTTCTCACAGACCCGGT
AGAATTTTTTTAGCCAGTTGTGGTAAAAATAACGGACTGAAACTCGATGG
GTTCCCTTATTTTTTATGACTGGGGATTTAAATTCTTTCGTTTTCAAGTC
AGAAAATTCAGTTGGGATGGGGAAAATAGCATAATATCTTGCAGCGAGGA
TTGGTTTATTTGATTATTTTCAGTGGGGACGAAAATTGGAGTATAATTTT
TCACCGGAGGTGATATTTTGGCCAATTTTTCAGTGGGAATGGTTCCCAGT
GGGTCTGTGAGAAAGGGGTGTATCTCTGGATGTCTTTGACAATCACTAAC
TACTTTTAAATAGAAAATATGTTAAAGAAAAATTTTCATCCTTTAACAAT
TATTATAGGATTGCCTAAACAGAAGACTGGGAGCGCGAAGTTGTACTCCA
ATACTATGCAACCGTGTAAAGCAACCTTGCTACAGTGTAAGTTGATTGTT
TTACAACATTTCAATCTTGATTTAATAGTCGTGGGTGCAACCTTGTTTTC
CAAAAACGAGGCAAAGATTATACACATTCTCTATAAATTCTCACGTCTGT
TTCCTATCTTAACTCGTCTTGTATATATAGTTTAGAAATCAGTTTGGTGG
AACAATGTTTAGTAGGATTCTTGTATTTCTTTGAAGTCCAATGGATACCT
GGGAAGACCATATGTTTAGAAAAATGAATATTTTCATTCACAATTTCTGC
TTTGAATATTTGGGGCCCCCCTATTTGCTGTAAACGGAACAAAAACTCCT
CCTTGAAACGCTGTTTTTCTTCCCAGATGGATTAATATTTTTTGATAACG
CGAACCACGAACCACAAAGCTCGAAGATCAAATGGGATATCTTGAGTTTT
TCAAATATTTTAAAAATATATTGATGCATATATCCTTGCATGCAAAGGCT
TTCTTGCAAAGTGTTCATGTTTTTTAAAACAGACCTTGTGTTACACGTAA
TTAATAGAGGAGAAGTGAAAGAAATGAAAAACTAGGAGTGGGAAAATCTC
AAGCCTAGATCCTTACTCTAACTGCTACAACACCCTTCTCACAGACCCGG
TAGGATTCTTGTAGCTAGTGGAGATAAAATAACGGACTGAAATTCGATAG
GGATCGATATTCTCAAATTCTTTATGAATGGGGATTTTAATTCTTTTATT
TTCAAGTCAGAAAACTCAGTGGGGATAGGAAAAATAGTCAATATTTCGCA
GTGAGGATTGGTTTATTTGATTATTTTCAGTGGGGACAGAAATTGGAGGA
TAATTTTTCACCGGGGACGATATTTTGGCCAAGTTTTCCAGTGGTGGGTC
TGTGAGAAGGGGGTTTGCTACAGTATTTTGTGATTCTGAAATGTCCATCA
GTAACCAAAAGGTGGCTCTGTTGTACGAGATCGGGAATGGGATACATAAA
CAAAAGTTCACTCATCCTAAGGCATATCAATTTTTTTCAATGTCATCTTT
TTTTTAAGCACACAAACCATGCTTTCCAATGAACTTGCACGAAATAGTTC
TCAAGTACAGAAGCAGCGACAGAAAGTCATCATCAAGTTCACGTGGAGGA
ATGAGACGAGCAAGAAGGAAGAATAAGAAACAAAAACATCACAATCACGT
TAAAAGGAGGAAAACAACCAAAGTGCAATGAAATTATTTTCACAACCAAC
TATAAAGCTTATGTCAGGATAAAGTTTGACTTTTATTTATATGCACTTAT
AATTTTGAACGTATTATCTTTAAAGTATTTAAACCGAGAAGAAAGTTTCT
CATATCTGTAATGAAACGTGTAGTTAAAAAGAAGGAGCTTAAAGTCAATA
AATTTTGTTTGATATCTTTTGATTGAATGAATATTTTTGAAAAAATTTTT
GACAGTGATAATGATCTAAGATTGAAGAATCACTCCTGTGAAAATGATAA
TTATACCACATTTCTACAAGAAGTTGATTTTTTTCTTCTT Coding sequence (CDS) from alignment at scaffold_253:1143260..1145449- >TCONS_00055566 ID=TCONS_00055566|Name=TCONS_00055566|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_253:1143260..1145449- (Clytia hemisphaerica)
CACACAAACCATGCTTTCCAATGAACTTGCACGAAATAGTTCTCAAGTAC
AGAAGCAGCGACAGAAAGTCATCATCAAGTTCACGTGGAGGAATGAGACG
AGCAAGAAGGAAGAATAAGAAACAAAAACATCACAATCACGTTAAAAGGA
GGAAAACAACCAAAGTGCAATGAGATTGCCTAAACAGAAGACTGGGAGCG
CGAAGTTGTACTCCAATACTATGCAACCGTGTAAAGCAACCTTGCTACAG
TATGAAGGTGTTTTTGATTATGGTATTTTCTTGCTATTTAGTGCTGCAAA
CTAAAGCACACAAACCATGCTTTCCAATGAACTTGCACGAAATAGTTCTC
AAGTACAGAAGCAGCGACAGAAAGTCATCATCAAGTTCACGTGGAGGAAT
GAGACGAGCAAGAAGGAAGAATAAGAAACAAAAACATCACAATCACGTTA
AAAGGAGGAAAACAACCAAAGTGCAATGAGATTGCCTAAACAGAAGACTG
GGAGCGCGAAGTTGTACTCCAATACTATGCAACCGTGTAAAGCAACCTTG
CTACAGTATGAAGGTGTTTTTGATTATGGTATTTTCTTGCTATTTAGTGC
TGCAAACTAAAGCACACAAACCATGCTTTCCAATGAACTTGCACGAAATA
GTTCTCAAGTACAGAAGCAGCGACAGAAAGTCATCATCAAGTTCACGTGG
AGGAATGAGACGAGCAAGAAGGAAGAATAAGAAACAAAAACATCACAATC
ACGTTAAAAGGAGGAAAACAACCAAAGTGCAATGAGATTGCCTAAACAGA
AGACTGGGAGCGCGAAGTTGTACTCCAATACTATGCAACCGTGTAAAGCA
ACCTTGCTACAGTATGAAGGTGTTTTTGATTATGGTATTTTCTTGCTATT
TAGTGCTGCAAACTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055566-exon-scaffold_253-1575043694:1145345..1145449 | TCONS_00055566-exon-scaffold_253-1575043694:1145345..1145449 | Clytia hemisphaerica | exon |
| TCONS_00055566-exon-scaffold_253-1575043694:1144764..1144841 | TCONS_00055566-exon-scaffold_253-1575043694:1144764..1144841 | Clytia hemisphaerica | exon |
| TCONS_00055566-exon-scaffold_253-1575043694:1143260..1143741 | TCONS_00055566-exon-scaffold_253-1575043694:1143260..1143741 | Clytia hemisphaerica | exon |
| TCONS_00055566-exon-scaffold_253-1510915933:1145345..1145449 | TCONS_00055566-exon-scaffold_253-1510915933:1145345..1145449 | Clytia hemisphaerica | exon |
| TCONS_00055566-exon-scaffold_253-1510915933:1144764..1144841 | TCONS_00055566-exon-scaffold_253-1510915933:1144764..1144841 | Clytia hemisphaerica | exon |
| TCONS_00055566-exon-scaffold_253-1510915933:1143260..1143741 | TCONS_00055566-exon-scaffold_253-1510915933:1143260..1143741 | Clytia hemisphaerica | exon |
| TCONS_00055566-exon-scaffold_253-1491911889:1145345..1145449 | TCONS_00055566-exon-scaffold_253-1491911889:1145345..1145449 | Clytia hemisphaerica | exon |
| TCONS_00055566-exon-scaffold_253-1491911889:1144764..1144841 | TCONS_00055566-exon-scaffold_253-1491911889:1144764..1144841 | Clytia hemisphaerica | exon |
| TCONS_00055566-exon-scaffold_253-1491911889:1143260..1143741 | TCONS_00055566-exon-scaffold_253-1491911889:1143260..1143741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:1143260..1145449 - |
Blast
The following BLAST results are available for this feature:
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