TCONS_00055569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055569
Unique NameTCONS_00055569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2042

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055569 ID=TCONS_00055569|Name=TCONS_00055569|organism=Clytia hemisphaerica|type=transcript|length=2042bp
ttccAACCCTTAATCCTCTCCTTAATCCAGACCCTTATGTTACAGTATGT
CGAGAGAGTAACGACTAACAGACTGATTTCAAATGATGTTTTTTCTCAAC
ATTTCAAGCTTCACGATctagaaaataataataaaatatggAAGAGTCAC
AAGAAAGCAGGACTGGTATGAACAAAGATCTCGACCAATGGATAGAACAA
TTAAACGACTGTAAACAATTATCAGAAAACCAAGTAAAAAATTTAACAGA
TAAGGCAAAAGAAATATTATCAAAAGAATCAAACGTCCAAGATGTCAAAT
GTCCAGTCACAGTATGTGGTGATGTTCATGGGCAATTTCACGACTTGATG
GAACTCTTCCGTATAGGGGGCAAATCACCCGACACCAACTATTTATTCAT
GGGTGATTACGTAGATCGTGGCTATTACTCAGTGGAAACTGTCACATTAC
TCGTTGCACTGAAGGTACGATATCCAGAAAGAATCACTATTCTTCGCGGA
AATCACGAAAGTCGACAAATTACACAAGTATACGGGTTTTACGATGAATG
TCTAAGGAAATACGGTAACGCTAATGTTTGGAAATACTTCACGGACTTGT
TCGACTACCTTCCATTAACGGCACTCGTTGACAGTCAAATCTTTTGTTTA
CACGGTGGTTTATCGCCTTCAATCGACACACTTGATCACATTCGTGCACT
CGACCGTTTACAAGAAGTACCACACGAAGGACCCATGTGTGATCTCTTAT
GGTCTGACCCTGATGACCGTGGAGGTTGGGGAATCTCACCTCGTGGTGCT
GGATACACTTTCGGACAGGATATCTCGGAAACTTTCAATCATACAAACGG
ATTAACGCTTATCGCTCGTGCTCATCAACTTGTTATGGAGGGTTATAATT
GGTGTCATGATCGAAACGTCGTCACGATATTCAGCGCACCTAATTATTGT
TATCGGTGTGGTAACcaagccgccattatggaaCTGGACGACGCGCTCAA
ATATTCATTCTTGCAATTCGACCCTGCTCCAAGGCGAGGAGAGCCGCATG
TCACTAGACGCACCCCAGACtatttcctataaaaaaacaacaacaacgaa
TATTCATTGACATTGTGAAAAGCAACTTAGGTCCAACTTAGGTTGAATTT
AAAACATCTCATTGATGTTTGGAAGGGACAGATTCATGTTTAATGTACAG
ATTTGATCAATCAATAGAAGGGTGAATCGCATATTTGTAAATTATGAGTT
ACCGTGACCACACCCTCGTTACGTCATCGTGATTCCCTCCGAaagcaaat
ttaaattttattccTTCTCTCTCCAGATTCACTTATTTTTTAACTGATTA
ACGAAAAAAATATAGACAAAGTTTGCCGAGTTGCAGGTCAGCTACCCCTT
AGAGTATCAATAACACTTACCTTGTTTAACTTTCAGTGAAAGCTCCTATA
CTAAAATGATTAAGTATTCAACACCAATACCAATCCACTAGGTTCCGAAT
TTTACCCTttacttttataagaattttttgtttcaatctCTTACCTACGT
GTTGTGGTTCTCAACGTTGTTACGTAAAAACCGGATGTCCACGTAAACGT
ATGCCTTTTCGTTCCCCAaatgtgtttttattttaacGTGATAATGATTG
CTAGGCCTTTCTAGAttaagaaattttcttttttatgatgatATAGGTTG
ATGAAACAACTCTCTCGATGCAgtattttttattactttctcTATACTAC
TAAAGAAAATAGATAGATTCTGTTTATGTATCTATTGTAAATTCTAATCA
TTAGACCAAAAATCACgttataataaataaaataaaatttcaattgtctt
attagaTAATAAAgagatgtattttatttatCCTTTGCTAAATCCTCCAA
ATTCTGACTCGTTTCAACAACTTGAAGGTTAATTTTTATAACTCTGCTCC
AATAGTACTAGAGAAGTAAGCAACCTAGAGGTGTCGTCTCTTTGCAGAAA
AACTGATACCTTACCTAGCCTTTGGAACAAAATGTTTGTAat
Run BLAST on NCBI

protein sequence of TCONS_00055569-protein

>TCONS_00055569-protein ID=TCONS_00055569-protein|Name=TCONS_00055569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MEESQESRTGMNKDLDQWIEQLNDCKQLSENQVKNLTDKAKEILSKESNV
QDVKCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVE
TVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKY
FTDLFDYLPLTALVDSQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPM
CDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHTNGLTLIARAHQLVM
EGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDALKYSFLQFDPAPRR
GEPHVTRRTPDYFL
Run BLAST on NCBI

transcript from alignment at scaffold_253:1150514..1155069-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055569 ID=TCONS_00055569|Name=TCONS_00055569|organism=Clytia hemisphaerica|type=transcript|length=4556bp|location=Sequence derived from alignment at scaffold_253:1150514..1155069- (Clytia hemisphaerica)
TTCCAACCCTTAATCCTCTCCTTAATCCAGACCCTTATGTTACAGTATGT
CGAGAGAGTAACGACTAACAGACTGATTTCAAATGATGTTTTTTCTCAAC
ATTTCAAGCTTCACGATCTAGAAAATAATAATAAAATATGGAAGAGTCAC
AAGAAAGCAGGACTGGTATGAACAAAGATCTCGACCAATGGATAGAACAA
TTAAACGACTGTAAACAATTATCAGAAAACCAAGTAAAAAATTTAACAGA
TAAGGTATGTTATATCTCTTCTATTTTGTTTTACTATGATAGTTTTGTAA
TTTGATCCAAAATCAATAATAGCATGAAAAGAATGGTTTCGAGGTAAATA
TTTACTGTATTTGTATTTTCATGTTGGATTTTTTAGAAAAAAGTTTTGCC
AGTTTTAATTTTATTTTCCACTCCTTATCCATTTCTACTCCAGGCAAAAG
AAATATTATCAAAAGAATCAAACGTCCAAGATGTCAAATGTCCAGTCACA
GTATGTGGTGATGTTCATGGGCAATTTCACGACTTGATGGAACTCTTCCG
TATAGGGGGCAAATCACCCGACACCAACTATTTATTCATGGGTGATTACG
TAGATCGTGGCTATTACTCAGTGGAAACTGTCACATTACTCGTTGCACTG
AAGGTTAGAGTCATTGTTTGCCTTTGCAGGCTGCTCTTATTTGAGTAATA
TTGGCCATATTTAAATTGTATTTTTTTTTTGCAATTAAAGACACTCCAAA
ACATCTCCCCCTTTCACAAAATCTGGTTCTTTTCGAAGAAGCTATTTTGT
TTTCCTAAATTAGTCGAAATTTTTCTTGAGATCAAATCTCCCCTTCATTA
TTTTTTTTCTCCCTTTCTCATCAACTTCATGATTTTTTGAATGCCTATCT
ATCAAACTATTAATTAATTTTGCTCTTGTGTCATAACTTTGTTAAATTTT
AGGTACGATATCCAGAAAGAATCACTATTCTTCGCGGAAATCACGAAAGT
CGACAAATTACACAAGTATACGGGTTTTACGATGAATGTCTAAGGAAATA
CGGTAACGCTAATGTTTGGAAATACTTCACGGACTTGTTCGACTACCTTC
CATTAACGGCACTCGTTGACAGTCAAGTAAGTCCTTTTTACAGCTTCTAA
ATCAAGCGAAATTTACCTTAGGCAACAAGCTCTTTCTCGAAGGAGTACAT
AAAAAACCTGTTTTCGAATGAGTTTTGACCCTGGAGGGGTAAAGTTAATA
ACAAAAAACTCAGAATAACAGAAGCTCTCCTCTTTTTTGAGAGAACATTC
GAATAAGTGATGTGTAAGGATTTGTATGCCCTTGCGATGCTACCGCAATT
TTCTGTAAATTGTTCGTTTCCTACACAGTGTTCACTGATCAGGGACTTAT
TTCTCTTTTCTAGATCTTTTGTTTACACGGTGGTTTATCGCCTTCAATCG
ACACACTTGATCACATTCGTGCACTCGACCGTTTACAAGAAGTACCACAC
GAAGGACCCATGTGTGATCTCTTATGGTCTGACCCTGATGACCGTGGAGG
TTGGGGAATCTCACCTCGTGGTGCTGGATACACTTTCGGACAGGATATCT
CGGAAACTTTCAATCATACAAACGGATTAACGCTTATCGCTCGTGCTCAT
CAACTTGTTATGGAGGTGAGTTCTTTTTTAGTACCCTTTTCACCACTCCA
AACTGCTCCAAACTTACGCTAAGTTACATAGCCTTGTAAATTGATGTCTT
TCCATACTTTTCACCTTGAAAGCTACCATGAATAGATAAGTTTCAAGAAA
CTCTTCATTTAACTCATTCAATCTGATTCAGTTACGATGATAACTTCAAA
TTATACGGATTGTAGGTGAAAAGTTATGCCCCTGCCCCTANCATTTCTAC
TCCAGGCAAAAGAAATATTATCAAAAGAATCAAACGTCCAAGATGTCAAA
TGTCCAGTCACAGTATGTGGTGATGTTCATGGGCAATTTCACGACTTGAT
GGAACTCTTCCGTATAGGGGGCAAATCACCCGACACCAACTATTTATTCA
TGGGTGATTACGTAGATCGTGGCTATTACTCAGTGGAAACTGTCACATTA
CTCGTTGCACTGAAGGTTAGAGTCATTGTTTGCCTTTGCAGGCTGCTCTT
ATTTGAGTAATATTGGCCATATTTAAATTGTATTTTTTTTTTGCAATTAA
AGACACTCCAAAACATCTCCCCCTTTCACAAAATCTGGTTCTTTTCGAAG
AAGCTATTTTGTTTTCCTAAATTAGTCGAAATTTTTCTTGAGATCAAATC
TCCCCTTCATTATTTTTTTTCTCCCTTTCTCATCAACTTCATGATTTTTT
GAATGCCTATCTATCAAACTATTAATTAATTTTGCTCTTGTGTCATAACT
TTGTTAAATTTTAGGTACGATATCCAGAAAGAATCACTATTCTTCGCGGA
AATCACGAAAGTCGACAAATTACACAAGTATACGGGTTTTACGATGAATG
TCTAAGGAAATACGGTAACGCTAATGTTTGGAAATACTTCACGGACTTGT
TCGACTACCTTCCATTAACGGCACTCGTTGACAGTCAAGTAAGTCCTTTT
TACAGCTTCTAAATCAAGCGAAATTTACCTTAGGCAACAAGCTCTTTCTC
GAAGGAGTACATAAAAAACCTGTTTTCGAATGAGTTTTGACCCTGGAGGG
GTAAAGTTAATAACAAAAAACTCAGAATAACAGAAGCTCTCCTCTTTTTT
GAGAGAACATTCGAATAAGTGATGTGTAAGGATTTGTATGCCCTTGCGAT
GCTACCGCAATTTTCTGTAAATTGTTCGTTTCCTACACAGTGTTCACTGA
TCAGGGACTTATTTCTCTTTTCTAGATCTTTTGTTTACACGGTGGTTTAT
CGCCTTCAATCGACACACTTGATCACATTCGTGCACTCGACCGTTTACAA
GAAGTACCACACGAAGGACCCATGTGTGATCTCTTATGGTCTGACCCTGA
TGACCGTGGAGGTTGGGGAATCTCACCTCGTGGTGCTGGATACACTTTCG
GACAGGATATCTCGGAAACTTTCAATCATACAAACGGATTAACGCTTATC
GCTCGTGCTCATCAACTTGTTATGGAGGTGAGTTCTTTTTTAGTACCCTT
TTCACCACTCCAAACTGCTCCAAACTTACGCTAAGTTACATAGCCTTGTA
AATTGATGTCTTTCCATACTTTTCACCTTGAAAGCTACCATGAATAGATA
AGTTTCAAGAAACTCTTCATTTAACTCATTCAATCTGATTCAGTTACGAT
GATAACTTCAAATTATACGGATTGTAGGTGAAAAGTTATGCCCCTGCCCC
TAGAAGATTAACTCCCATAAAAGATACAGTTAAAATAATCACACCATTTT
TTAGGGTTATAATTGGTGTCATGATCGAAACGTCGTCACGATATTCAGCG
CACCTAATTATTGTTATCGGTGTGGTAACCAAGCCGCCATTATGGAACTG
GACGACGCGCTCAAATATTCATTCTTGCAATTCGACCCTGCTCCAAGGCG
AGGAGAGCCGCATGTCACTAGACGCACCCCAGACTATTTCCTATAAAAAA
ACAACAACAACGAATATTCATTGACATTGTGAAAAGCAACTTAGGTCCAA
CTTAGGTTGAATTTAAAACATCTCATTGATGTTTGGAAGGGACAGATTCA
TGTTTAATGTACAGATTTGATCAATCAATAGAAGGGTGAATCGCATATTT
GTAAATTATGAGTTACCGTGACCACACCCTCGTTACGTCATCGTGATTCC
CTCCGAAAGCAAATTTAAATTTTATTCCTTCTCTCTCCAGATTCACTTAT
TTTTTAACTGATTAACGAAAAAAATATAGACAAAGTTTGCCGAGTTGCAG
GTCAGCTACCCCTTAGAGTATCAATAACACTTACCTTGTTTAACTTTCAG
TGAAAGCTCCTATACTAAAATGATTAAGTATTCAACACCAATACCAATCC
ACTAGGTTCCGAATTTTACCCTTTACTTTTATAAGAATTTTTTGTTTCAA
TCTCTTACCTACGTGTTGTGGTTCTCAACGTTGTTACGTAAAAACCGGAT
GTCCACGTAAACGTATGCCTTTTCGTTCCCCAAATGTGTTTTTATTTTAA
CGTGATAATGATTGCTAGGCCTTTCTAGATTAAGAAATTTTCTTTTTTAT
GATGATATAGGTTGATGAAACAACTCTCTCGATGCAGTATTTTTTATTAC
TTTCTCTATACTACTAAAGAAAATAGATAGATTCTGTTTATGTATCTATT
GTAAATTCTAATCATTAGACCAAAAATCACGTTATAATAAATAAAATAAA
ATTTCAATTGTCTTATTAGATAATAAAGAGATGTATTTTATTTATCCTTT
GCTAAATCCTCCAAATTCTGACTCGTTTCAACAACTTGAAGGTTAATTTT
TATAACTCTGCTCCAATAGTACTAGAGAAGTAAGCAACCTAGAGGTGTCG
TCTCTTTGCAGAAAAACTGATACCTTACCTAGCCTTTGGAACAAAATGTT
TGTAAT

Coding sequence (CDS) from alignment at scaffold_253:1150514..1155069-

>TCONS_00055569 ID=TCONS_00055569|Name=TCONS_00055569|organism=Clytia hemisphaerica|type=CDS|length=5670bp|location=Sequence derived from alignment at scaffold_253:1150514..1155069- (Clytia hemisphaerica)
GGTTATAATTGGTGTCATGATCGAAACGTCGTCACGATATTCAGCGCACC
TAATTATTGTTATCGGTGTGGTAACCAAGCCGCCATTATGGAACTGGACG
ACGCGCTCAAATATTCATTCTTGCAATTCGACCCTGCTCCAAGGCGAGGA
GAGCCGCATGTCACTAGACGCACCCCAGACTATTTCCTATAAATTCGTGC
ACTCGACCGTTTACAAGAAGTACCACACGAAGGACCCATGTGTGATCTCT
TATGGTCTGACCCTGATGACCGTGGAGGTTGGGGAATCTCACCTCGTGGT
GCTGGATACACTTTCGGACAGGATATCTCGGAAACTTTCAATCATACAAA
CGGATTAACGCTTATCGCTCGTGCTCATCAACTTGTTATGGAGATCTTTT
GTTTACACGGTGGTTTATCGCCTTCAATCGACACACTTGATCACGTACGA
TATCCAGAAAGAATCACTATTCTTCGCGGAAATCACGAAAGTCGACAAAT
TACACAAGTATACGGGTTTTACGATGAATGTCTAAGGAAATACGGTAACG
CTAATGTTTGGAAATACTTCACGGACTTGTTCGACTACCTTCCATTAACG
GCACTCGTTGACAGTCAAGCAAAAGAAATATTATCAAAAGAATCAAACGT
CCAAGATGTCAAATGTCCAGTCACAGTATGTGGTGATGTTCATGGGCAAT
TTCACGACTTGATGGAACTCTTCCGTATAGGGGGCAAATCACCCGACACC
AACTATTTATTCATGGGTGATTACGTAGATCGTGGCTATTACTCAGTGGA
AACTGTCACATTACTCGTTGCACTGAAGATGGAAGAGTCACAAGAAAGCA
GGACTGGTATGAACAAAGATCTCGACCAATGGATAGAACAATTAAACGAC
TGTAAACAATTATCAGAAAACCAAGTAAAAAATTTAACAGATAAGGGTTA
TAATTGGTGTCATGATCGAAACGTCGTCACGATATTCAGCGCACCTAATT
ATTGTTATCGGTGTGGTAACCAAGCCGCCATTATGGAACTGGACGACGCG
CTCAAATATTCATTCTTGCAATTCGACCCTGCTCCAAGGCGAGGAGAGCC
GCATGTCACTAGACGCACCCCAGACTATTTCCTATAAATTCGTGCACTCG
ACCGTTTACAAGAAGTACCACACGAAGGACCCATGTGTGATCTCTTATGG
TCTGACCCTGATGACCGTGGAGGTTGGGGAATCTCACCTCGTGGTGCTGG
ATACACTTTCGGACAGGATATCTCGGAAACTTTCAATCATACAAACGGAT
TAACGCTTATCGCTCGTGCTCATCAACTTGTTATGGAGATCTTTTGTTTA
CACGGTGGTTTATCGCCTTCAATCGACACACTTGATCACGTACGATATCC
AGAAAGAATCACTATTCTTCGCGGAAATCACGAAAGTCGACAAATTACAC
AAGTATACGGGTTTTACGATGAATGTCTAAGGAAATACGGTAACGCTAAT
GTTTGGAAATACTTCACGGACTTGTTCGACTACCTTCCATTAACGGCACT
CGTTGACAGTCAAGCAAAAGAAATATTATCAAAAGAATCAAACGTCCAAG
ATGTCAAATGTCCAGTCACAGTATGTGGTGATGTTCATGGGCAATTTCAC
GACTTGATGGAACTCTTCCGTATAGGGGGCAAATCACCCGACACCAACTA
TTTATTCATGGGTGATTACGTAGATCGTGGCTATTACTCAGTGGAAACTG
TCACATTACTCGTTGCACTGAAGATGGAAGAGTCACAAGAAAGCAGGACT
GGTATGAACAAAGATCTCGACCAATGGATAGAACAATTAAACGACTGTAA
ACAATTATCAGAAAACCAAGTAAAAAATTTAACAGATAAGGGTTATAATT
GGTGTCATGATCGAAACGTCGTCACGATATTCAGCGCACCTAATTATTGT
TATCGGTGTGGTAACCAAGCCGCCATTATGGAACTGGACGACGCGCTCAA
ATATTCATTCTTGCAATTCGACCCTGCTCCAAGGCGAGGAGAGCCGCATG
TCACTAGACGCACCCCAGACTATTTCCTATAAATTCGTGCACTCGACCGT
TTACAAGAAGTACCACACGAAGGACCCATGTGTGATCTCTTATGGTCTGA
CCCTGATGACCGTGGAGGTTGGGGAATCTCACCTCGTGGTGCTGGATACA
CTTTCGGACAGGATATCTCGGAAACTTTCAATCATACAAACGGATTAACG
CTTATCGCTCGTGCTCATCAACTTGTTATGGAGATCTTTTGTTTACACGG
TGGTTTATCGCCTTCAATCGACACACTTGATCACGTACGATATCCAGAAA
GAATCACTATTCTTCGCGGAAATCACGAAAGTCGACAAATTACACAAGTA
TACGGGTTTTACGATGAATGTCTAAGGAAATACGGTAACGCTAATGTTTG
GAAATACTTCACGGACTTGTTCGACTACCTTCCATTAACGGCACTCGTTG
ACAGTCAAGCAAAAGAAATATTATCAAAAGAATCAAACGTCCAAGATGTC
AAATGTCCAGTCACAGTATGTGGTGATGTTCATGGGCAATTTCACGACTT
GATGGAACTCTTCCGTATAGGGGGCAAATCACCCGACACCAACTATTTAT
TCATGGGTGATTACGTAGATCGTGGCTATTACTCAGTGGAAACTGTCACA
TTACTCGTTGCACTGAAGATGGAAGAGTCACAAGAAAGCAGGACTGGTAT
GAACAAAGATCTCGACCAATGGATAGAACAATTAAACGACTGTAAACAAT
TATCAGAAAACCAAGTAAAAAATTTAACAGATAAGGGTTATAATTGGTGT
CATGATCGAAACGTCGTCACGATATTCAGCGCACCTAATTATTGTTATCG
GTGTGGTAACCAAGCCGCCATTATGGAACTGGACGACGCGCTCAAATATT
CATTCTTGCAATTCGACCCTGCTCCAAGGCGAGGAGAGCCGCATGTCACT
AGACGCACCCCAGACTATTTCCTATAAATTCGTGCACTCGACCGTTTACA
AGAAGTACCACACGAAGGACCCATGTGTGATCTCTTATGGTCTGACCCTG
ATGACCGTGGAGGTTGGGGAATCTCACCTCGTGGTGCTGGATACACTTTC
GGACAGGATATCTCGGAAACTTTCAATCATACAAACGGATTAACGCTTAT
CGCTCGTGCTCATCAACTTGTTATGGAGATCTTTTGTTTACACGGTGGTT
TATCGCCTTCAATCGACACACTTGATCACGTACGATATCCAGAAAGAATC
ACTATTCTTCGCGGAAATCACGAAAGTCGACAAATTACACAAGTATACGG
GTTTTACGATGAATGTCTAAGGAAATACGGTAACGCTAATGTTTGGAAAT
ACTTCACGGACTTGTTCGACTACCTTCCATTAACGGCACTCGTTGACAGT
CAAGCAAAAGAAATATTATCAAAAGAATCAAACGTCCAAGATGTCAAATG
TCCAGTCACAGTATGTGGTGATGTTCATGGGCAATTTCACGACTTGATGG
AACTCTTCCGTATAGGGGGCAAATCACCCGACACCAACTATTTATTCATG
GGTGATTACGTAGATCGTGGCTATTACTCAGTGGAAACTGTCACATTACT
CGTTGCACTGAAGATGGAAGAGTCACAAGAAAGCAGGACTGGTATGAACA
AAGATCTCGACCAATGGATAGAACAATTAAACGACTGTAAACAATTATCA
GAAAACCAAGTAAAAAATTTAACAGATAAGGGTTATAATTGGTGTCATGA
TCGAAACGTCGTCACGATATTCAGCGCACCTAATTATTGTTATCGGTGTG
GTAACCAAGCCGCCATTATGGAACTGGACGACGCGCTCAAATATTCATTC
TTGCAATTCGACCCTGCTCCAAGGCGAGGAGAGCCGCATGTCACTAGACG
CACCCCAGACTATTTCCTATAAATTCGTGCACTCGACCGTTTACAAGAAG
TACCACACGAAGGACCCATGTGTGATCTCTTATGGTCTGACCCTGATGAC
CGTGGAGGTTGGGGAATCTCACCTCGTGGTGCTGGATACACTTTCGGACA
GGATATCTCGGAAACTTTCAATCATACAAACGGATTAACGCTTATCGCTC
GTGCTCATCAACTTGTTATGGAGATCTTTTGTTTACACGGTGGTTTATCG
CCTTCAATCGACACACTTGATCACGTACGATATCCAGAAAGAATCACTAT
TCTTCGCGGAAATCACGAAAGTCGACAAATTACACAAGTATACGGGTTTT
ACGATGAATGTCTAAGGAAATACGGTAACGCTAATGTTTGGAAATACTTC
ACGGACTTGTTCGACTACCTTCCATTAACGGCACTCGTTGACAGTCAAGC
AAAAGAAATATTATCAAAAGAATCAAACGTCCAAGATGTCAAATGTCCAG
TCACAGTATGTGGTGATGTTCATGGGCAATTTCACGACTTGATGGAACTC
TTCCGTATAGGGGGCAAATCACCCGACACCAACTATTTATTCATGGGTGA
TTACGTAGATCGTGGCTATTACTCAGTGGAAACTGTCACATTACTCGTTG
CACTGAAGATGGAAGAGTCACAAGAAAGCAGGACTGGTATGAACAAAGAT
CTCGACCAATGGATAGAACAATTAAACGACTGTAAACAATTATCAGAAAA
CCAAGTAAAAAATTTAACAGATAAGGGTTATAATTGGTGTCATGATCGAA
ACGTCGTCACGATATTCAGCGCACCTAATTATTGTTATCGGTGTGGTAAC
CAAGCCGCCATTATGGAACTGGACGACGCGCTCAAATATTCATTCTTGCA
ATTCGACCCTGCTCCAAGGCGAGGAGAGCCGCATGTCACTAGACGCACCC
CAGACTATTTCCTATAAATTCGTGCACTCGACCGTTTACAAGAAGTACCA
CACGAAGGACCCATGTGTGATCTCTTATGGTCTGACCCTGATGACCGTGG
AGGTTGGGGAATCTCACCTCGTGGTGCTGGATACACTTTCGGACAGGATA
TCTCGGAAACTTTCAATCATACAAACGGATTAACGCTTATCGCTCGTGCT
CATCAACTTGTTATGGAGATCTTTTGTTTACACGGTGGTTTATCGCCTTC
AATCGACACACTTGATCACGTACGATATCCAGAAAGAATCACTATTCTTC
GCGGAAATCACGAAAGTCGACAAATTACACAAGTATACGGGTTTTACGAT
GAATGTCTAAGGAAATACGGTAACGCTAATGTTTGGAAATACTTCACGGA
CTTGTTCGACTACCTTCCATTAACGGCACTCGTTGACAGTCAAGCAAAAG
AAATATTATCAAAAGAATCAAACGTCCAAGATGTCAAATGTCCAGTCACA
GTATGTGGTGATGTTCATGGGCAATTTCACGACTTGATGGAACTCTTCCG
TATAGGGGGCAAATCACCCGACACCAACTATTTATTCATGGGTGATTACG
TAGATCGTGGCTATTACTCAGTGGAAACTGTCACATTACTCGTTGCACTG
AAGATGGAAGAGTCACAAGAAAGCAGGACTGGTATGAACAAAGATCTCGA
CCAATGGATAGAACAATTAAACGACTGTAAACAATTATCAGAAAACCAAG
TAAAAAATTTAACAGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034947XLOC_034947Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055569-proteinTCONS_00055569-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055569-exon-scaffold_253-1575043694:1154816..1155069TCONS_00055569-exon-scaffold_253-1575043694:1154816..1155069Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1575043694:1154417..1154626TCONS_00055569-exon-scaffold_253-1575043694:1154417..1154626Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1575043694:1153944..1154117TCONS_00055569-exon-scaffold_253-1575043694:1153944..1154117Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1575043694:1153606..1153656TCONS_00055569-exon-scaffold_253-1575043694:1153606..1153656Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1575043694:1151943..1152143TCONS_00055569-exon-scaffold_253-1575043694:1151943..1152143Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1575043694:1150514..1151665TCONS_00055569-exon-scaffold_253-1575043694:1150514..1151665Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1510915933:1154816..1155069TCONS_00055569-exon-scaffold_253-1510915933:1154816..1155069Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1510915933:1154417..1154626TCONS_00055569-exon-scaffold_253-1510915933:1154417..1154626Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1510915933:1153944..1154117TCONS_00055569-exon-scaffold_253-1510915933:1153944..1154117Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1510915933:1153606..1153656TCONS_00055569-exon-scaffold_253-1510915933:1153606..1153656Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1510915933:1151943..1152143TCONS_00055569-exon-scaffold_253-1510915933:1151943..1152143Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1510915933:1150514..1151665TCONS_00055569-exon-scaffold_253-1510915933:1150514..1151665Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1491911889:1154816..1155069TCONS_00055569-exon-scaffold_253-1491911889:1154816..1155069Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1491911889:1154417..1154626TCONS_00055569-exon-scaffold_253-1491911889:1154417..1154626Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1491911889:1153944..1154117TCONS_00055569-exon-scaffold_253-1491911889:1153944..1154117Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1491911889:1153606..1153656TCONS_00055569-exon-scaffold_253-1491911889:1153606..1153656Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1491911889:1151943..1152143TCONS_00055569-exon-scaffold_253-1491911889:1151943..1152143Clytia hemisphaericaexon
TCONS_00055569-exon-scaffold_253-1491911889:1150514..1151665TCONS_00055569-exon-scaffold_253-1491911889:1150514..1151665Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1150514..1155069 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
318.508	303.441	451.798	447.69	410.377	316.569	337.023	360.252	274.503	282.382	355.202	328.537	386.904	424.611	299.371	325.567	283.662	317.34	318.581	298.433	349.731	361.709	265.934	282.464	306.855	317.616	263.98	337.332	215.002	218.69
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006186Ser/Thr-sp_prot-phosphatase
IPR004843Calcineurin-like_PHP_ApaH
IPR029052Metallo-depent_PP-like
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
Blast
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BLAST of TCONS_00055569 vs. Swiss-Prot (Human)
Match: PP2AB (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Homo sapiens GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 612.838 bits (1579), Expect = 0.000e+0
Identity = 286/305 (93.77%), Postives = 297/305 (97.38%), Query Frame = 3 
Query:  165 GMNKDLDQWIEQLNDCKQLSENQVKNLTDKAKEILSKESNVQDVKCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDSQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHTNGLTLIARAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDALKYSFLQFDPAPRRGEPHVTRRTPDYFL 1079
               K+LDQW+EQLN+CKQL+ENQV+ L +KAKEIL+KESNVQ+V+CPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD QIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNH NGLTL++RAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDD LKYSFLQFDPAPRRGEPHVTRRTPDYFL
Sbjct:    5 AFTKELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYFL 309
The following BLAST results are available for this feature:
BLAST of TCONS_00055569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PP2AB0.000e+093.77Serine/threonine-protein phosphatase 2A catalytic ... [more]
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