TCONS_00055642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055642
Unique NameTCONS_00055642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055642 ID=TCONS_00055642|Name=TCONS_00055642|organism=Clytia hemisphaerica|type=transcript|length=423bp
ggtatcattgtgatgagaatttttcagactacaagttagtgtaaaatttg
ttactggatactgaaagtttaaaaagtaattgatCAAATTCGAAAAACAT
AAAACCACTTTTATAAACATAGCATATAGAAACTAGCCCTCTTCGCATGG
CGAGTcgtttttttctgaactttttgtaacgaccaaattaaagctaaaac
aaaggaGTTTTCAATAGACACAATCAGAACACTTCGGGTAATCAGAGAAG
CACTTTTTCTATTCCATCCCATTTCTCTGGGTTAGACAAATCTAGGGTAC
AGCTTGGGAATTACAGTGATGAAAATAAGCTCTCAAATTCTTATACCCTA
ACAGCTGACAATTAGGCTAAGCTAGAATTACCTCTTCTCCTTTCTATTCC
AACGATAAAATGCTTACATAGTT
Run BLAST on NCBI

transcript from alignment at scaffold_253:1159809..1160231

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055642 ID=TCONS_00055642|Name=TCONS_00055642|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at scaffold_253:1159809..1160231 (Clytia hemisphaerica)
AACTATGTAAGCATTTTATCGTTGGAATAGAAAGGAGAAGAGGTAATTCT
AGCTTAGCCTAATTGTCAGCTGTTAGGGTATAAGAATTTGAGAGCTTATT
TTCATCACTGTAATTCCCAAGCTGTACCCTAGATTTGTCTAACCCAGAGA
AATGGGATGGAATAGAAAAAGTGCTTCTCTGATTACCCGAAGTGTTCTGA
TTGTGTCTATTGAAAACtcctttgttttagctttaatttggtcgttacaa
aaagttcagaaaaaaacgACTCGCCATGCGAAGAGGGCTAGTTTCTATAT
GCTATGTTTATAAAAGTGGTTTTATGTTTTTCGAATTTGatcaattactt
tttaaactttcagtatccagtaacaaattttacactaacttgtagtctga
aaaattctcatcacaatgatacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035014XLOC_035014Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055642-exon-scaffold_253-1491911889:1159809..1160231TCONS_00055642-exon-scaffold_253-1491911889:1159809..1160231Clytia hemisphaericaexon
TCONS_00055642-exon-scaffold_253-1510915933:1159809..1160231TCONS_00055642-exon-scaffold_253-1510915933:1159809..1160231Clytia hemisphaericaexon
TCONS_00055642-exon-scaffold_253-1575043694:1159809..1160231TCONS_00055642-exon-scaffold_253-1575043694:1159809..1160231Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1159809..1160231 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65784	2.58665	6.56981	5.50932	14.0848	10.6	14.9199	7.78207	4.33079	12.1131	3.0233	5.52056	2.20515	2.63358	1.03551	2.1215	0.995626	0.892924	3.17217	1.65973	2.08376	3.75281	11.215	15.8989	1.77995	1.4297	5.91039	11.4024	91.0835	84.7383
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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