TCONS_00055663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055663
Unique NameTCONS_00055663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length969

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055663 ID=TCONS_00055663|Name=TCONS_00055663|organism=Clytia hemisphaerica|type=transcript|length=969bp
TGTGTATTCTTTTATGTTGCTTTAAAGAACCAtttgttttaaagcattta
ccacattcttcacacTTGAATGACTTTTCTTCAGTGTGTATTTTTTTGTG
TCTCTTTAAAGAACCCtttgttttaaagcatttaccacattcttcacatt
tGAATGGCTTTTCTTTGGTGTGTATTCTTTTATGTTGCTTTAAAGAACCC
tttgttttaaagcatttaccacattcttcacatttGAATGGCTTTTCTTC
GGTATGTAATTTAATATGTTCCTTTAAAGAAGTCtttgttttaaagcatt
taccacattcctCACATTTGAATGGCTTTTCTTCGGTATGTAATTTAATA
TGTTCCTTTAAAGAAGTCTTTGTTTTAAAGTATTTACCGCAGTTTTCACA
TTTAAATGGTCTAATGCTACTATGCACTATAAGATGCTGTGTTAGAACAT
CTGATCGGgaaaaacatttaccacattcttgacacttGAAAGGTCTTTCG
CCAGTATGAATTCTACGATGTTTCTTAAAATCACAGTTGAATTTAAAGGA
TTTACCACACTCTTTGCATTTAAAACCTTTGCCACGTTCTTTTGTGACAA
GACTATTTTTCCTTGTCTTGGTTATAGGATTTTCTGCTTGTAAATTAGTG
GCATATTTTGTTAAGTTCGTTGGTGGAATTATTTCATCGAGTTCaatttt
aatatcaaaagaGTCTGATTGATGCTGAGAATCGGATAACTCTTCGACAT
gggccaaaaaattattttcctcttCAATCTTAATCTTCAATAGTATATCA
TCATTTATGTTTGTATCAACAAATTCATGTTTTTTCTCtccaaataaatc
aaaattagcATCCTCTGGACCAATCTCGAGTGTAACCGAATTCATCTCAT
TTTTGTCACGTTCCATTTCGTTGGAAAACTCGTCGATTTCACTTTTCATA
TTAATAGTCTTTATTTTcc
Run BLAST on NCBI

transcript from alignment at scaffold_256:323..1291+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055663 ID=TCONS_00055663|Name=TCONS_00055663|organism=Clytia hemisphaerica|type=transcript|length=969bp|location=Sequence derived from alignment at scaffold_256:323..1291+ (Clytia hemisphaerica)
TGTGTATTCTTTTATGTTGCTTTAAAGAACCAtttgttttaaagcattta ccacattcttcacacTTGAATGACTTTTCTTCAGTGTGTATTTTTTTGTG TCTCTTTAAAGAACCCtttgttttaaagcatttaccacattcttcacatt tGAATGGCTTTTCTTTGGTGTGTATTCTTTTATGTTGCTTTAAAGAACCC tttgttttaaagcatttaccacattcttcacatttGAATGGCTTTTCTTC GGTATGTAATTTAATATGTTCCTTTAAAGAAGTCtttgttttaaagcatt taccacattcctCACATTTGAATGGCTTTTCTTCGGTATGTAATTTAATA TGTTCCTTTAAAGAAGTCTTTGTTTTAAAGTATTTACCGCAGTTTTCACA TTTAAATGGTCTAATGCTACTATGCACTATAAGATGCTGTGTTAGAACAT CTGATCGGgaaaaacatttaccacattcttgacacttGAAAGGTCTTTCG CCAGTATGAATTCTACGATGTTTCTTAAAATCACAGTTGAATTTAAAGGA TTTACCACACTCTTTGCATTTAAAACCTTTGCCACGTTCTTTTGTGACAA GACTATTTTTCCTTGTCTTGGTTATAGGATTTTCTGCTTGTAAATTAGTG GCATATTTTGTTAAGTTCGTTGGTGGAATTATTTCATCGAGTTCaatttt aatatcaaaagaGTCTGATTGATGCTGAGAATCGGATAACTCTTCGACAT gggccaaaaaattattttcctcttCAATCTTAATCTTCAATAGTATATCA TCATTTATGTTTGTATCAACAAATTCATGTTTTTTCTCtccaaataaatc aaaattagcATCCTCTGGACCAATCTCGAGTGTAACCGAATTCATCTCAT TTTTGTCACGTTCCATTTCGTTGGAAAACTCGTCGATTTCACTTTTCATA TTAATAGTCTTTATTTTcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035032XLOC_035032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055663-exon-scaffold_256-1491911889:323..1291TCONS_00055663-exon-scaffold_256-1491911889:323..1291Clytia hemisphaericaexon
TCONS_00055663-exon-scaffold_256-1510915933:323..1291TCONS_00055663-exon-scaffold_256-1510915933:323..1291Clytia hemisphaericaexon
TCONS_00055663-exon-scaffold_256-1575043694:323..1291TCONS_00055663-exon-scaffold_256-1575043694:323..1291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:323..1291 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (1.43325 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37072 1.43325 0.918378 0.602309 0.299041 0 0.120032 0.168559 0.15735 0 0.122135 0 0 0.0967254 0.0533617 0.22757 0.14778 0.281206 0.0646839 0 0.141273 0.276355 1.22239 0.578617 0.255954 0.513467 0.215478 0 0.682253 0.330019
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
100200300400500600700800900Expect = 3.74e-69 / Id = 54.40Expect = 1.87e-63 / Id = 54.40Expect = 3.51e-63 / Id = 54.40Expect = 6.90e-63 / Id = 54.40Expect = 1.71e-59 / Id = 54.40Expect = 8.35e-56 / Id = 54.40Expect = 8.36e-48 / Id = 54.40Expect = 7.28e-51 / Id = 54.40SequenceZN273
Match NameE-valueIdentityDescription
ZN2733.740e-6954.40Zinc finger protein 273 OS=Homo sapiens GN=ZNF273 ... [more]
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