TCONS_00055676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055676
Unique NameTCONS_00055676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055676 ID=TCONS_00055676|Name=TCONS_00055676|organism=Clytia hemisphaerica|type=transcript|length=1514bp
tgcacctttgtatcaaaaatcacaaaattttcctatgattcaatcccgag
aaaagttggtaacagatgaacggacgaacggacaaacacaggttaaAAGT
TATAAACTAAATTCATAAATGGGTATATCATATAAATCTGCATAAGTAAG
TTTTATTCCTTTTTGTGAATTCAATTGTGATGTCTTGAGAGATGTTTTTT
GCATCTAAACGTTTTACCACATTTTTCCTCCATCATGAGTTCTCGTATAA
GTTTTCAAGGTACCCTTTTGCATAAAGCATTTACCACACTATTGACattc
aaattgtttttctcCTGTGTGAGTTCTCAAATGTCTTTTCAAGGTACCCT
TTNCCTCCATCATTTACCACACTCTTGacattcaaattgttttttcctGT
GTGAGTTCTCAAATGTCTTTTCAAGGTACCCTTTTGCATAAAGCATTTGC
CACACTCTTGACATTCAAATTNGaccccgagaaaagttggtaacagaacG
GACAAACAGACAAACACAGGTTACAATTTATAAACTAAATTCATAAATGG
GTATATCATATAAATCTGCATAAGTAAGTTTTATTCCTTTTTGTGAATTC
AATTGTGATGTCTTGAGAGATGTTTTTTGCATCTAAAAGTTTTACCACAT
TTTTCCTCCATCATGAGTTCTCGTATGAGTTTTCAAGGTACCCTTTTGCA
TAAAGCATTTACCACACTCTTGGCattcaaattgtttttctcCTGTGTGA
GTTCTCAAATGTCTTTTCAGGCTGCCTTTTTGTGTAAAGAtcttaccaca
ttcttcacatttaaaattattttcacctgCATGAATTTTCAAATGGATAG
CCAAGCTGCCTTTTTGTCTGAAGTGTATACCACATTCTTCACACTTGAAA
GGTTTTTCTCCAGTATGagttttgaaatgttctttcaaGTTCTTTTTTTG
GGTAAAGagtttaccacattcttcacacTTAAAGGGCTTTTCACCTGAAT
GAGCTCTCAAATGTGCTTTCAAGTTGCTATTTTGAGTAAACTgcttacca
cattcttcacatttAAAACCCATGACTTCACCATGTACTTTTTGTATATG
CTCATTAAGGAACTCCTTTTTGTCGAAACAGAAACTACACTTTAtgcatt
tgaaataattttcatttttcctttctTCTTCATCTATAACAATTGAACTT
GCCatttccattaaattttcagTATTTGACAAGTCTTCTTCCGTAGATAT
TGACAGATTATCGGAGGTTTCCATGGTTAAAACTTCATTATCTTTAGAAA
TTAAATCAGGGATCAAATCAATCTGCAGACTGGTCATATCTGTTTTTTCC
ATATCTAAAGTGGTCCTAACAAGATCATTGAAATCCAAAGtctggtcttc
aaaatcaagTTCTCTCCCATTGATTGGTTCATTCCATGTAAAACTGAAAT
TATTTTCCATGTTACAGTCTGtgacttcattttcaatctcCATTGTCAAG
ACTGGGAgttttta
Run BLAST on NCBI

transcript from alignment at scaffold_256:23158..24755+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055676 ID=TCONS_00055676|Name=TCONS_00055676|organism=Clytia hemisphaerica|type=transcript|length=1598bp|location=Sequence derived from alignment at scaffold_256:23158..24755+ (Clytia hemisphaerica)
tgcacctttgtatcaaaaatcacaaaattttcctatgattcaatcccgag aaaagttggtaacagatgaacggacgaacggacaaacacaggttaaAAGT TATAAACTAAATTCATAAATGGGTATATCATATAAATCTGCATAAGTAAG TTTTATTCCTTTTTGTGAATTCAATTGTGATGTCTTGAGAGATGTTTTTT GCATCTAAACGTTTTACCACATTTTTCCTCCATCATGAGTTCTCGTATAA GTTTTCAAGGTACCCTTTTGCATAAAGCATTTACCACACTATTGACattc aaattgtttttctcCTGTGTGAGTTCTCAAATGTCTTTTCAAGGTACCCT TTNCCTCCATCATTTACCACACTCTTGacattcaaattgttttttcctGT GTGAGTTCTCAAATGTCTTTTCAAGGTACCCTTTTGCATAAAGCATTTGC CACACTCTTGACATTCAAATTNGaccccgagaaaagttggtaacagaacG GACAAACAGACAAACACAGGTTACAATTTATAAACTAAATTCATAAATGG GTATATCATATAAATCTGCATAAGTAAGTTTTATTCCTTTTTGTGAATTC AATTGTGATGTCTTGAGAGATGTTTTTTGCATCTAAAAGTTTTACCACAT TTTTCCTCCATCATGAGTTCTCGTATGAGTTTTCAAGGTACCCTTTTGCA TAAAGCATTTACCACACTATTGACATTCAAATTGTCTTTCTCCTGTGTGA GTTCTCAAATGTCTTTTCAAGGTACCCTTTTGCATAAAGCATTTACCACA CTCTTGGCattcaaattgtttttctcCTGTGTGAGTTCTCAAATGTCTTT TCAGGCTGCCTTTTTGTGTAAAGAtcttaccacattcttcacatttaaaa ttattttcacctgCATGAATTTTCAAATGGATAGCCAAGCTGCCTTTTTG TCTGAAGTGTATACCACATTCTTCACACTTGAAAGGTTTTTCTCCAGTAT GagttttgaaatgttctttcaaGTTCTTTTTTTGGGTAAAGagtttacca cattcttcacacTTAAAGGGCTTTTCACCTGAATGAGCTCTCAAATGTGC TTTCAAGTTGCTATTTTGAGTAAACTgcttaccacattcttcacatttAA AACCCATGACTTCACCATGTACTTTTTGTATATGCTCATTAAGGAACTCC TTTTTGTCGAAACAGAAACTACACTTTAtgcatttgaaataattttcatt tttcctttctTCTTCATCTATAACAATTGAACTTGCCatttccattaaat tttcagTATTTGACAAGTCTTCTTCCGTAGATATTGACAGATTATCGGAG GTTTCCATGGTTAAAACTTCATTATCTTTAGAAATTAAATCAGGGATCAA ATCAATCTGCAGACTGGTCATATCTGTTTTTTCCATATCTAAAGTGGTCC TAACAAGATCATTGAAATCCAAAGtctggtcttcaaaatcaagTTCTCTC CCATTGATTGGTTCATTCCATGTAAAACTGAAATTATTTTCCATGTTACA GTCTGtgacttcattttcaatctcCATTGTCAAGACTGGGAgttttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035035XLOC_035035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055676-exon-scaffold_256-1491911889:23158..23844TCONS_00055676-exon-scaffold_256-1491911889:23158..23844Clytia hemisphaericaexon
TCONS_00055676-exon-scaffold_256-1510915933:23158..23844TCONS_00055676-exon-scaffold_256-1510915933:23158..23844Clytia hemisphaericaexon
TCONS_00055676-exon-scaffold_256-1575043694:23158..23844TCONS_00055676-exon-scaffold_256-1575043694:23158..23844Clytia hemisphaericaexon
TCONS_00055676-exon-scaffold_256-1491911889:23929..24755TCONS_00055676-exon-scaffold_256-1491911889:23929..24755Clytia hemisphaericaexon
TCONS_00055676-exon-scaffold_256-1510915933:23929..24755TCONS_00055676-exon-scaffold_256-1510915933:23929..24755Clytia hemisphaericaexon
TCONS_00055676-exon-scaffold_256-1575043694:23929..24755TCONS_00055676-exon-scaffold_256-1575043694:23929..24755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:23158..24755 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15812 1.58474 0.90269 0.362503 0.53757 0.411696 0.476172 0.409608 0.107541 0 0.370321 0 0.0436871 0 0.134189 0 0 0 0 0 0 0 0.991884 0.763219 1.87737 1.22808 0 0 0.231865 0.591871
Blast
BLAST of TCONS_00055676 vs. Swiss-Prot (Human)
Match: ZN33B (Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 7.583e-50
Identity = 122/358 (34.08%), Postives = 164/358 (45.81%), Query Frame = -1
Query:  363 EDQTLDFNDLVRTTLDMEKTDMTSLQIDLIPDLISKDNEV------------LTMETSDNLSISTEEDLSNTENLMEMASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW*NF*MQKTSLKTSQLNSQKGIKLTYADLYDIPIYEFSL*IVTCVCLFVRSVTNFSRGXI*MSRVWQMLYAKGYLEKTFENSHRKKQFECQECGK 1400
            E+   D+N+  RT  D      +SL    IP   SKD+               T+   D + +    D   + N       +   ++  K E +F+C +C   F +K  L  H Q+VH     F+C +CGK F + SNL  H R+H+GEKPF+C ECGK F+ K  L  H +THTGEKP++C  CG  F QK  L  H + H G+  ++C ECGK F     L  H RTHTGEK FEC ECGK F QK  L  H RTH G K +      KT    S L      ++ +  L     YE          L +   T+            +    K  L + +     +K +EC ECGK
Sbjct:  243 EENNCDYNEFGRTFCDS-----SSLLFHQIPP--SKDSHYEFSDCEKFLCVKSTLSKHDGVPVK-HYDCGESGNNFRRKLCLSQLQKGDKGEKHFECNECGKAFWEKSHLTRH-QRVHTGEKHFQCNQCGKTFWEKSNLTKHQRSHTGEKPFECNECGKAFSHKSALTLHQRTHTGEKPYQCNACGKTFYQKSDLTKHQRTHTGQKPYECYECGKSFCMNSHLTVHQRTHTGEKPFECLECGKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRH---QIIHTGLKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRTHTGEKPYECHECGK 588          

HSP 2 Score: 45.0542 bits (105), Expect = 7.583e-50
Identity = 23/49 (46.94%), Postives = 28/49 (57.14%), Query Frame = -3
Query:  217 MMEXKGTLKRHLRTHTGEKQFECQ*CGKCFMQKGTLKTYTRTHDGGKMW 363
            +   K  L +H RTHTGEK +EC  CGK F QK  L  + R H G K +
Sbjct:  589 IFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIHIGEKPY 637          

HSP 3 Score: 158.303 bits (399), Expect = 3.335e-42
Identity = 93/236 (39.41%), Postives = 122/236 (51.69%), Query Frame = -1
Query:  576 SSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECG--------------IH--------------FRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW*NF*MQKTSLKTSQLNSQKGIKL 1199
            S++ + +     E  ++C  C   F +K  L +H Q+ H     ++C ECGK F  NS+L  H R H+GEKPF+C ECGK F QK +L +H +TH G+KP++C  CG              IH              F  K  L IH + H GE  F C ECGK F+ K +L +H RTHTGEK +EC ECGK F  K  L  H RTH G K +      KT  + SQL   + I +
Sbjct:  398 SALTLHQRTHTGEKPYQCNACGKTFYQKSDLTKH-QRTHTGQKPYECYECGKSFCMNSHLTVHQRTHTGEKPFECLECGKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRHQIIHTGLKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRTHTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIHI 632          

HSP 4 Score: 33.113 bits (74), Expect = 3.335e-42
Identity = 21/54 (38.89%), Postives = 26/54 (48.15%), Query Frame = -2
Query:  308 FECQECGKCFMQKGTLKRHLRTHTGKNNLNVKSVVNDGGKGYLEKTFENSHRRK 469
            +EC ECGK F  K  L  H RTHT +         N+ GK +  K+    H RK
Sbjct:  637 YECNECGKAFCHKSALIVHQRTHTQEKPYK----CNECGKSFCVKSGLILHERK 686          

HSP 5 Score: 160.614 bits (405), Expect = 5.089e-42
Identity = 80/170 (47.06%), Postives = 100/170 (58.82%), Query Frame = -1
Query:  645 FKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW 1154
            ++C  C   F  K  L  H Q +H  +  ++C ECGK F   S+L  H R H+GEKPF C ECGK F+ K  L +H++THTGEKP++C ECG  F  K  L  H + H GE  ++C ECGK F QK  L +H R H GEK +EC ECGK F  K  L  H RTH   K +
Sbjct:  497 YECNACGKTFYHKSVLTRH-QIIHTGLKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRTHTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIHIGEKPYECNECGKAFCHKSALIVHQRTHTQEKPY 665          

HSP 6 Score: 160.229 bits (404), Expect = 5.598e-42
Identity = 84/187 (44.92%), Postives = 108/187 (57.75%), Query Frame = -1
Query:  645 MASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW 1205
            M S + + +     E  F+C++C   F +K  L +H Q+ H     ++C  CGK F   S L  H   H+G KP++C ECGK F  K +L  H +THTGEKPF C ECG  F  K +L+ H + H GE  ++C ECGKIF  K  L +H RTHTGEK +EC ECGK F QK  L  H R H G K +
Sbjct:  452 MNSHLTVHQRTHTGEKPFECLECGKSFCQKSHLTQH-QRTHIGDKPYECNACGKTFYHKSVLTRHQIIHTGLKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRTHTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIHIGEKPY 637          

HSP 7 Score: 156.377 bits (394), Expect = 1.403e-40
Identity = 82/185 (44.32%), Postives = 104/185 (56.22%), Query Frame = -1
Query:  651 MASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGK 1205
            + S + I +     E  F C +C   F  K  L++H +   GE   ++C ECGK F   S L  H R H+GEKP++C ECGK F QK  L +H + H GEKP++C ECG  F  K +L +H + H  E  +KC ECGK F  K  L  H R HTGEK +EC ECGK F  K +L  H R H G K
Sbjct:  536 LKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRTHTGE-KPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIHIGEKPYECNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPYECNECGKSFSHKSSLTVHHRAHTGEK 719          

HSP 8 Score: 154.836 bits (390), Expect = 3.932e-40
Identity = 81/173 (46.82%), Postives = 104/173 (60.12%), Query Frame = -1
Query:  645 ENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW 1163
            E  ++C +C   F +K  L +H Q++H     ++C ECGK F   S L  H R H+ EKP+KC ECGK F  K  L  H + HTGEKP++C ECG  F  K SL +H + H GE + +C ECGKIF +K  L +H R+HTGEK +EC  C K F QK  L  H RTH G K +
Sbjct:  606 EKPYECNECGKTFCQKSQLTQH-QRIHIGEKPYECNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPYECNECGKSFSHKSSLTVHHRAHTGEKSCQCNECGKIFYRKSDLAKHQRSHTGEKPYECNTCRKTFSQKSNLIVHQRTHIGEKPY 777          

HSP 9 Score: 153.295 bits (386), Expect = 1.364e-39
Identity = 81/170 (47.65%), Postives = 101/170 (59.41%), Query Frame = -1
Query:  645 FKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW 1154
            ++C +C   F  K  L  H Q+ H     F C ECGK F+  S L  H R H+GEKP++C ECGK+F  K  L +H +THTGEKP++C ECG  F QK  L  H +IH GE  ++C ECGK F  K +L  H RTHT EK ++C ECGK F  K  L  H R H G K +
Sbjct:  525 YECYECGKTFCLKSDLTIH-QRTHTGEKPFACPECGKFFSHKSTLSQHYRTHTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRIHIGEKPYECNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPY 693          

HSP 10 Score: 152.14 bits (383), Expect = 3.329e-39
Identity = 80/173 (46.24%), Postives = 101/173 (58.38%), Query Frame = -1
Query:  645 ENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKTHTRTHDGGKMW 1163
            E  ++C +C   F  K +L +H  + H     ++C ECGK F Q S L  H R H GEKP++C ECGK F  K  L  H +THT EKP+KC ECG  F  K  L +H + H GE  ++C ECGK F+ K SL  H R HTGEK  +C ECGK F +K  L  H R+H G K +
Sbjct:  578 EKPYECHECGKIFYNKSYLTKH-NRTHTGEKPYECNECGKTFCQKSQLTQHQRIHIGEKPYECNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPYECNECGKSFSHKSSLTVHHRAHTGEKSCQCNECGKIFYRKSDLAKHQRSHTGEKPY 749          

HSP 11 Score: 121.709 bits (304), Expect = 3.254e-29
Identity = 66/146 (45.21%), Postives = 86/146 (58.90%), Query Frame = -1
Query:  726 ENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFE 1163
            E  ++C +C   F  K  L  H Q+ H +   +KC ECGK F   S L  H R H+GEKP++C ECGK F+ K +L  H + HTGEK  +C ECG  F +K  LA H + H GE  ++C  C K F+QK +L  H RTH GEK +E
Sbjct:  634 EKPYECNECGKAFCHKSALIVH-QRTHTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPYECNECGKSFSHKSSLTVHHRAHTGEKSCQCNECGKIFYRKSDLAKHQRSHTGEKPYECNTCRKTFSQKSNLIVHQRTHIGEKPYE 778          
The following BLAST results are available for this feature:
BLAST of TCONS_00055676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN33B7.583e-5034.08Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B ... [more]
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