TCONS_00055687 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055687
Unique NameTCONS_00055687
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055687 ID=TCONS_00055687|Name=TCONS_00055687|organism=Clytia hemisphaerica|type=transcript|length=844bp
ttaataacccctcgttattaatcccaaatcaccctctaaaccatgttatt
actagtacaaacGAATTGCAATGGtaacaactttttttctttttacagga
AAATAAAGACAGTAAAAAGAAAACTATTAATATGAAAAGTGAAATAGACG
TGTTTTCCAACGAAATGGAACGTGacaaaaatgaaatgaattcgGTTAAC
CTCAAGATTGGTCCAGAGGATGctagttttgatttatttggaGAGAAAAA
GCATGAACTTGTTGATGCAAACATAAATGATGATATACCATTGAAGATAA
AGATTGAAGGGGAAAATAATTCTTTGGTCCCTGTTGAAGAGGTATCCGAT
TCTTAGCATCAATCAGACTCGTTTGATATTAAAATTGAACTCGATGAAAT
ACTTCCACCAACGAACTTAACAACAGATGCCACCAATTTACAAGTAGAAA
ATCCTATAACCAAGACAAGGAAAAATATTCTTATCACAAAAGAACGTGGC
CAAAGTTTTAAATGCAAAGAGTGTGGTAAAGCTTTCAAGTTCAACTGTGA
TTTGAAGAGACATTTTAGAATTCACACTGGCGAAAGACCTTTCAAGTGTC
AAGAttgtggtaaatgttttgcCCAATCAGATGGTCTAACACAGCATCTT
ATAGTGCATAGCAGCATTAAGCCGTTTAAATGTGAGGAATGTggtaaaaa
ctttaaaacaaatggTTCTTTAAAAAAGCATATTAAGTTACACACCGAAA
AAAAGTCATTCAAATGTGAGAAATGTGGCAAATGCTTTAAAACAAATGGT
TCGTTAAAGCAACATAAAACAATACACACcaaagaaaaaacatt
Run BLAST on NCBI

transcript from alignment at scaffold_256:43072..43915

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055687 ID=TCONS_00055687|Name=TCONS_00055687|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at scaffold_256:43072..43915 (Clytia hemisphaerica)
aatgttttttctttgGTGTGTATTGTTTTATGTTGCTTTAACGAACCATT TGTTTTAAAGCATTTGCCACATTTCTCACATTTGAATGACTTTTTTTCGG TGTGTAACTTAATATGCTTTTTTAAAGAAccatttgttttaaagttttta ccACATTCCTCACATTTAAACGGCTTAATGCTGCTATGCACTATAAGATG CTGTGTTAGACCATCTGATTGGgcaaaacatttaccacaaTCTTGACACT TGAAAGGTCTTTCGCCAGTGTGAATTCTAAAATGTCTCTTCAAATCACAG TTGAACTTGAAAGCTTTACCACACTCTTTGCATTTAAAACTTTGGCCACG TTCTTTTGTGATAAGAATATTTTTCCTTGTCTTGGTTATAGGATTTTCTA CTTGTAAATTGGTGGCATCTGTTGTTAAGTTCGTTGGTGGAAGTATTTCA TCGAGTTCAATTTTAATATCAAACGAGTCTGATTGATGCTAAGAATCGGA TACCTCTTCAACAGGGACCAAAGAATTATTTTCCCCTTCAATCTTTATCT TCAATGGTATATCATCATTTATGTTTGCATCAACAAGTTCATGCTTTTTC TCtccaaataaatcaaaactagCATCCTCTGGACCAATCTTGAGGTTAAC cgaattcatttcatttttgtCACGTTCCATTTCGTTGGAAAACACGTCTA TTTCACTTTTCATATTAATAGTTTTCTTTTTACTGTCTTTATTTtcctgt aaaaagaaaaaaagttgttaCCATTGCAATTCgtttgtactagtaataac atggtttagagggtgatttgggattaataacgaggggttattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035042XLOC_035042Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055687-exon-scaffold_256-1491911889:43072..43915TCONS_00055687-exon-scaffold_256-1491911889:43072..43915Clytia hemisphaericaexon
TCONS_00055687-exon-scaffold_256-1510915933:43072..43915TCONS_00055687-exon-scaffold_256-1510915933:43072..43915Clytia hemisphaericaexon
TCONS_00055687-exon-scaffold_256-1575043694:43072..43915TCONS_00055687-exon-scaffold_256-1575043694:43072..43915Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:43072..43915 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.8088 3.48865 1.09532 1.88704 0.377184 0.320669 0.241566 0.365478 0.182278 0.485715 0.166259 0 0.10079 0.0758725 0.232544 0.204104 0.667692 0.445116 0.0749857 0 0.445367 0 2.14849 1.55126 0.95975 1.09171 0.211838 0.736117 0.731979 0.64957
Blast
BLAST of TCONS_00055687 vs. Swiss-Prot (Human)
Match: ZN254 (Zinc finger protein 254 OS=Homo sapiens GN=ZNF254 PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 3.321e-36
Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 3
Query:  495 RGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839
            R + +KC+ECGKAF ++  L RH R+HTGE+P+KC++CGK F+QS  LT H I+H+  KP+KCEECGK F  + +L KH  +HTE+K +KCEKCGK FK +  L  HK IHT EK
Sbjct:  458 REKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQSSILTNHKRIHTGEK 572          

HSP 2 Score: 122.479 bits (306), Expect = 5.306e-31
Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  501 QSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839
            + +KC+ECGKAF ++  L +H RIHT E+P+KC++CGK F  S  LT+H  +H+  KP+KCEECGK+F  + +L  H  +HT +K +KCE+CGK F  + +L +HK IHT+EK
Sbjct:  432 KPYKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAFNWSSTLTKHKIIHTEEK 544          

HSP 3 Score: 120.939 bits (302), Expect = 2.220e-30
Identity = 59/115 (51.30%), Postives = 80/115 (69.57%), Query Frame = 3
Query:  495 RGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839
            R + +KC+ECGKAF ++  L RH R+HTGE+P+KC++CGK F+QS  LT H I+H+  K +KC ECGK FK   +L  H  +H  +K +KCE+CGK F  + +L  HK IHT EK
Sbjct:  318 RKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNRSSNLTTHKIIHTGEK 432          

HSP 4 Score: 120.553 bits (301), Expect = 2.771e-30
Identity = 56/111 (50.45%), Postives = 79/111 (71.17%), Query Frame = 3
Query:  507 FKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839
            +KC+ECG+AF  + +L  H  IHTGE+P+KC++CGK F  S  LT+H  +H+  KP+KCEECGK F  + +L +H ++HT +K +KCE+CGK F  + +L  HK IHT EK
Sbjct:  266 YKCEECGEAFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEK 376          

HSP 5 Score: 119.398 bits (298), Expect = 6.469e-30
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 3
Query:  507 FKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839
            +KC+ECGK F  + +L  H  IHTGE+P+KC++CGK F  S  LT+H  +H+  KP+KCEECGK F  + +L +H ++HT +K +KCE+CGK F  + +L  HK IHT EK
Sbjct:  406 YKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQSSTLTTHKIIHTGEK 516          

HSP 6 Score: 117.087 bits (292), Expect = 4.537e-29
Identity = 61/127 (48.03%), Postives = 84/127 (66.14%), Query Frame = 3
Query:  459 TKTRKNILITKERGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839
            T T   I+ T E+   +KC+ECGKAF ++  L +H  IHT E+P+KC+ CGK F QS  LT H  +H+  KP+KCEECGK+F  + +  KH  +HT  K +KCE+CGK F  + +L +HK IHT E+
Sbjct:  504 TLTTHKIIHTGEK--PYKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNRSSTFTKHKVIHTGVKPYKCEECGKAFFWSSTLTKHKRIHTGEQ 628          

HSP 7 Score: 117.087 bits (292), Expect = 5.288e-29
Identity = 59/124 (47.58%), Postives = 83/124 (66.94%), Query Frame = 3
Query:  459 TKTRKNILITKERGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHT 830
            T TR   + T E+   +KC+ECGK+F  +  L  H  IHTGE+P+KC++CGK F  S  LT+H I+H+  KP+KCE+CGK FK +  L  H ++HT +K +KCE+CGK F  + +  +HK IHT
Sbjct:  476 TLTRHKRMHTGEK--PYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNRSSTFTKHKVIHT 597          

HSP 8 Score: 115.931 bits (289), Expect = 9.937e-29
Identity = 62/127 (48.82%), Postives = 84/127 (66.14%), Query Frame = 3
Query:  459 TKTRKNILITKERGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839
            T T   I+ T E+   +KC ECGKAFK    L  H  IH GE+ +KC++CGK F +S  LT H I+H+  KP+KCEECGK F  + +L KH ++HT +K +KCE+CGK F  + +L +HK +HT EK
Sbjct:  364 TLTTHKIIHTGEK--RYKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAFIWSSTLTRHKRMHTGEK 488          

HSP 9 Score: 114.005 bits (284), Expect = 5.070e-28
Identity = 57/126 (45.24%), Postives = 85/126 (67.46%), Query Frame = 3
Query:  459 TKTRKNILITKERGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKE 836
            T T+  I+ T+E+   +KC++CGKAFK +  L  H RIHTGE+P+KC++CGK F +S   T+H ++H+ +KP+KCEECGK F  + +L KH ++HT ++ +K EK GK F  +  L   K  H +E
Sbjct:  532 TLTKHKIIHTEEK--PYKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNRSSTFTKHKVIHTGVKPYKCEECGKAFFWSSTLTKHKRIHTGEQPYKWEKFGKAFNRSSHLTTDKITHWRE 655          

HSP 10 Score: 111.694 bits (278), Expect = 3.104e-27
Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 3
Query:  501 QSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839
            + +KC+ECGKAF ++  L  H +IHT ++P+KC++CGK F  S  LT+H  +H+  KP+KCEECGK F  + +L  H  +HT +K +KC +CGK FK   +L  HK IH  EK
Sbjct:  292 KPYKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQLSTLTTHKIIHVGEK 404          

HSP 11 Score: 110.923 bits (276), Expect = 6.803e-27
Identity = 61/127 (48.03%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  459 TKTRKNILITKERGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839
            T TR   + T E+   +KC+ECGKAF  +  L  H  IHTGE+ +KC +CGK F Q   LT H I+H   K +KCEECGK F  + +L  H  +HT +K +KCE+CGK F  + +L +HK IHT+EK
Sbjct:  336 TLTRHKRMHTGEK--PYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTKHKRIHTREK 460          

HSP 12 Score: 110.153 bits (274), Expect = 1.221e-26
Identity = 58/143 (40.56%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  495 RGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQD----------------------------CGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839
            R +S+KCKECGK F ++  L  H +I+T E+P+KC++                            CG+ F +S  LT H I+H+  KP+KCEECGK F  + +L +H K+HT KK +KCE+CGK F  + +L +HK +HT EK
Sbjct:  206 REKSYKCKECGKTFNWSSTLTNHRKIYTEEKPYKCEEYNKSPKQLSTLTTHEIIHAGEKLYKCEECGEAFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKAFIWSSTLTRHKRMHTGEK 348          

HSP 13 Score: 80.1073 bits (196), Expect = 8.076e-17
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 3
Query:  501 QSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839
            +SFKCK+  K F       +H  I+  E+ +KC++CGK F  S  LT H  +++  KP+KCEE  K+ K   +L  H  +H  +K +KCE+CG+ F  + +L  HK IHT EK
Sbjct:  180 KSFKCKKRVKLFCMLSHKTQHKSIYHREKSYKCKECGKTFNWSSTLTNHRKIYTEEKPYKCEEYNKSPKQLSTLTTHEIIHAGEKLYKCEECGEAFNRSSNLTTHKIIHTGEK 292          
The following BLAST results are available for this feature:
BLAST of TCONS_00055687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2543.321e-3656.52Zinc finger protein 254 OS=Homo sapiens GN=ZNF254 ... [more]
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