Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055687 ID=TCONS_00055687|Name=TCONS_00055687|organism=Clytia hemisphaerica|type=transcript|length=844bpRun BLAST on NCBI transcript from alignment at scaffold_256:43072..43915 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055687 ID=TCONS_00055687|Name=TCONS_00055687|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at scaffold_256:43072..43915 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00055687 vs. Swiss-Prot (Human)
Match: ZN254 (Zinc finger protein 254 OS=Homo sapiens GN=ZNF254 PE=2 SV=3) HSP 1 Score: 137.502 bits (345), Expect = 3.321e-36 Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 3 Query: 495 RGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839 R + +KC+ECGKAF ++ L RH R+HTGE+P+KC++CGK F+QS LT H I+H+ KP+KCEECGK F + +L KH +HTE+K +KCEKCGK FK + L HK IHT EK Sbjct: 458 REKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQSSILTNHKRIHTGEK 572 HSP 2 Score: 122.479 bits (306), Expect = 5.306e-31 Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 3 Query: 501 QSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839 + +KC+ECGKAF ++ L +H RIHT E+P+KC++CGK F S LT+H +H+ KP+KCEECGK+F + +L H +HT +K +KCE+CGK F + +L +HK IHT+EK Sbjct: 432 KPYKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAFNWSSTLTKHKIIHTEEK 544 HSP 3 Score: 120.939 bits (302), Expect = 2.220e-30 Identity = 59/115 (51.30%), Postives = 80/115 (69.57%), Query Frame = 3 Query: 495 RGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839 R + +KC+ECGKAF ++ L RH R+HTGE+P+KC++CGK F+QS LT H I+H+ K +KC ECGK FK +L H +H +K +KCE+CGK F + +L HK IHT EK Sbjct: 318 RKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNRSSNLTTHKIIHTGEK 432 HSP 4 Score: 120.553 bits (301), Expect = 2.771e-30 Identity = 56/111 (50.45%), Postives = 79/111 (71.17%), Query Frame = 3 Query: 507 FKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839 +KC+ECG+AF + +L H IHTGE+P+KC++CGK F S LT+H +H+ KP+KCEECGK F + +L +H ++HT +K +KCE+CGK F + +L HK IHT EK Sbjct: 266 YKCEECGEAFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEK 376 HSP 5 Score: 119.398 bits (298), Expect = 6.469e-30 Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 3 Query: 507 FKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839 +KC+ECGK F + +L H IHTGE+P+KC++CGK F S LT+H +H+ KP+KCEECGK F + +L +H ++HT +K +KCE+CGK F + +L HK IHT EK Sbjct: 406 YKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQSSTLTTHKIIHTGEK 516 HSP 6 Score: 117.087 bits (292), Expect = 4.537e-29 Identity = 61/127 (48.03%), Postives = 84/127 (66.14%), Query Frame = 3 Query: 459 TKTRKNILITKERGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839 T T I+ T E+ +KC+ECGKAF ++ L +H IHT E+P+KC+ CGK F QS LT H +H+ KP+KCEECGK+F + + KH +HT K +KCE+CGK F + +L +HK IHT E+ Sbjct: 504 TLTTHKIIHTGEK--PYKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNRSSTFTKHKVIHTGVKPYKCEECGKAFFWSSTLTKHKRIHTGEQ 628 HSP 7 Score: 117.087 bits (292), Expect = 5.288e-29 Identity = 59/124 (47.58%), Postives = 83/124 (66.94%), Query Frame = 3 Query: 459 TKTRKNILITKERGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHT 830 T TR + T E+ +KC+ECGK+F + L H IHTGE+P+KC++CGK F S LT+H I+H+ KP+KCE+CGK FK + L H ++HT +K +KCE+CGK F + + +HK IHT Sbjct: 476 TLTRHKRMHTGEK--PYKCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNRSSTFTKHKVIHT 597 HSP 8 Score: 115.931 bits (289), Expect = 9.937e-29 Identity = 62/127 (48.82%), Postives = 84/127 (66.14%), Query Frame = 3 Query: 459 TKTRKNILITKERGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839 T T I+ T E+ +KC ECGKAFK L H IH GE+ +KC++CGK F +S LT H I+H+ KP+KCEECGK F + +L KH ++HT +K +KCE+CGK F + +L +HK +HT EK Sbjct: 364 TLTTHKIIHTGEK--RYKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTKHKRIHTREKPYKCEECGKAFIWSSTLTRHKRMHTGEK 488 HSP 9 Score: 114.005 bits (284), Expect = 5.070e-28 Identity = 57/126 (45.24%), Postives = 85/126 (67.46%), Query Frame = 3 Query: 459 TKTRKNILITKERGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKE 836 T T+ I+ T+E+ +KC++CGKAFK + L H RIHTGE+P+KC++CGK F +S T+H ++H+ +KP+KCEECGK F + +L KH ++HT ++ +K EK GK F + L K H +E Sbjct: 532 TLTKHKIIHTEEK--PYKCEKCGKAFKQSSILTNHKRIHTGEKPYKCEECGKSFNRSSTFTKHKVIHTGVKPYKCEECGKAFFWSSTLTKHKRIHTGEQPYKWEKFGKAFNRSSHLTTDKITHWRE 655 HSP 10 Score: 111.694 bits (278), Expect = 3.104e-27 Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 3 Query: 501 QSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839 + +KC+ECGKAF ++ L H +IHT ++P+KC++CGK F S LT+H +H+ KP+KCEECGK F + +L H +HT +K +KC +CGK FK +L HK IH EK Sbjct: 292 KPYKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQLSTLTTHKIIHVGEK 404 HSP 11 Score: 110.923 bits (276), Expect = 6.803e-27 Identity = 61/127 (48.03%), Postives = 81/127 (63.78%), Query Frame = 3 Query: 459 TKTRKNILITKERGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839 T TR + T E+ +KC+ECGKAF + L H IHTGE+ +KC +CGK F Q LT H I+H K +KCEECGK F + +L H +HT +K +KCE+CGK F + +L +HK IHT+EK Sbjct: 336 TLTRHKRMHTGEK--PYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQLSTLTTHKIIHVGEKLYKCEECGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTKHKRIHTREK 460 HSP 12 Score: 110.153 bits (274), Expect = 1.221e-26 Identity = 58/143 (40.56%), Postives = 83/143 (58.04%), Query Frame = 3 Query: 495 RGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQD----------------------------CGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839 R +S+KCKECGK F ++ L H +I+T E+P+KC++ CG+ F +S LT H I+H+ KP+KCEECGK F + +L +H K+HT KK +KCE+CGK F + +L +HK +HT EK Sbjct: 206 REKSYKCKECGKTFNWSSTLTNHRKIYTEEKPYKCEEYNKSPKQLSTLTTHEIIHAGEKLYKCEECGEAFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKAFIWSSTLTRHKRMHTGEK 348 HSP 13 Score: 80.1073 bits (196), Expect = 8.076e-17 Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 3 Query: 501 QSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEK 839 +SFKCK+ K F +H I+ E+ +KC++CGK F S LT H +++ KP+KCEE K+ K +L H +H +K +KCE+CG+ F + +L HK IHT EK Sbjct: 180 KSFKCKKRVKLFCMLSHKTQHKSIYHREKSYKCKECGKTFNWSSTLTNHRKIYTEEKPYKCEEYNKSPKQLSTLTTHEIIHAGEKLYKCEECGEAFNRSSNLTTHKIIHTGEK 292 The following BLAST results are available for this feature:
BLAST of TCONS_00055687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|