TCONS_00055704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055704
Unique NameTCONS_00055704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055704 ID=TCONS_00055704|Name=TCONS_00055704|organism=Clytia hemisphaerica|type=transcript|length=620bp
TTTGTCTTTGAAAAACGCGTTTACTAAGTTCCTTATTCTGATTGGTGGAT
TTTTTGATGACGATGCGTTTTTCATTATGAGATATATCTGTCCTGCCGTA
AACCGACAAATTCGGGAAATCGAACAAGAAGCTTCCTGCAGTTTTCTATT
TGACTAAAATGGGAGCCGCCATTTTATTTCTTCGAGCTGTTTCAAGAATA
TCTCAAGAGCAATGTCCTCAAACATCACTTCAACCATCAAGTTTTACATC
AAATCTAAGGGGTATCAGgcttttttcACTGATGGCTGACCCTGGGACAA
GCTAGGAAGAGATGACCGACTGATTCTATAATTGTTGAGTTGCCTTTCTT
CAAACGGTAATTAgGATGCTAAATGAATGTTGAACTACAAAACAAGATTT
AATTGATTCAAACtgggaaaaagaaaatcatcttACAAAAAGGTgtcTTA
AAAGCTAGTGGAAGAAGTGTCTGGATAGCAATTTTCAAGaCCTTAAGGAT
CGGACTGATTGGATTGGATCGGACAGATTGCTCATCGTCTCGACGTCTTG
TAGCGATCAGATTCGTCAACCTTTATAACATCAATCCCATGTACTATTGC
catttggattttgaattttt
Run BLAST on NCBI

transcript from alignment at scaffold_257:8964..12586-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055704 ID=TCONS_00055704|Name=TCONS_00055704|organism=Clytia hemisphaerica|type=transcript|length=3623bp|location=Sequence derived from alignment at scaffold_257:8964..12586- (Clytia hemisphaerica)
TTTGTCTTTGAAAAACGCGTTTACTAAGTTCCTTATTCTGATTGGTGGAT
TTTTTGATGACGATGCGTTTTTCATTATGAGATATATCTGTCCTGCCGTA
AACCGACAAATTCGGGAAATCGAACAAGAAGCTTCCTGCAGTTTTCTATT
TGACTAAAATGGGAGCCGCCATTTTATTTCTTCGAGCTGTTTCAAGAATA
TCTCAAGAGCAATGTCCTCAAACATCACTTCAACCATCAAGTTTTACATC
AAATCTAAGGGGTATCAGGTAGGGAGTCATTATTTATGATTTAGAACTTT
AAATTAAAATAAATTTGATATTTTTAGCTGTAAAACGACTAACAACTAAT
CAAAGTTTGGTGCTCGATGTTGTTGTGTTGTAGCCTCAGTTAGATTTCTT
TTGGAGCTTATTCAAATATTTTTTCTTTTCCATCAGACGAAATATAAACC
TAGGGTGGATTGTCCATGTTGTACAATATAGTCACTTTTTTTTTTTTGGG
AAACAACACCCAACAAGTGCACAAACAGTTCACCAGTTTATGTGCTTTCA
GACAAGATGAAATGACTGAAACTATTTTTATACTAGACTGGTTTGGTAAA
AAGATTCCCTTATCATTTCCCTTATTTATCCCTCACTTTTCTCAAAAAAA
TGTATCATCATAGAATAGACCTTGATCAATAGAGATATTTGCCTAATGTT
TACAATTTGAAAATAAGCTTTCATAGTAGACAATTTGATTCCTTGTATAT
CCACAATAATTAATTATTAACAAGTACCGTGAGATCGGGTAACTTGCATC
AGTGGAGTAACCTGGCTGGTCATTAAAATATATTAGAGCTACGAGCAGAG
CTGCGTAGTTCATTTGTTTTGAAATTTTGCCACTTTGATTGGTCAGTCAT
TTGATGGCCATGCAAGTTTCCCTCCACTGATGCAAGTTACCCGACTTCAG
GGTATATACATTCTCAGGCGATGTCAACCAACCAATTAATTGGAAGTGAG
GCAAAATAATTTGTTTTTGTTTTTTGAAAATGAAACACTATATTGAAGAC
AATAGGTATAATCCAAGGTTTATGTAATCAAATTGATCAAGTAAAAATGT
AGTANTCAACCAACCAATTAATTGGAAGCGAGGCAAAAAAATTGTTTTTG
TTTTTTGAAAATGAAACACTAAATTGAAGACAATAGGTATAACCCAAGGT
TTATGTAATCAAATTGATCAAGAAAAAATGAAGTACCTTCTATTAGATTC
TATGATTGAATTTTAATCTTGCGATTGACTTCAATTAATTTGATAATCGA
ATTATTTGGTTGACATCGCCTTTTGACATCAATTACAATCAATAATCGAT
ATAGATATAATAATTAAGGTCCAAAACATTGTGACCTAGTCTAAAACACA
GTGACTATCGGTTATCAATCGATATAGATCGATTTAATGTAATCAATTAA
TAAACGATATCAATCATATTGATAGGTACAATCGATAATATCGATTTCAA
CGACAAGTTTGAAATTAACTTAGAAAAATTAACTNATATTGATAGGTACA
ATTGATGATATCGATTTGAACGACAAGTTTGAAAAACTTAGAAAAATTAA
CTATAGATGTAATGATAAAATAATTAATGTCCAATTGTATTGGGTTGTAA
TTGTGTATTGGTTGGTATTTTCAGTTTCAACAAATTTTGATTTTTTTTTG
TGTTTCTTTCAGGCTTTTTTCACTGATGGCTGACCCTGGGACAAGCTAGG
AAGAGATGACCGACTGATTCTATAATTGTTGAGTTGCCTTTCTTCAAACG
GTAATTAGTAGGTAATATTTCTCGTACTTGCACCACTTTTTTAAAAGCAT
AAATAAAAAGTAGAGAAATATTATAAATTCAAATTATACTTTTTCTGACT
TGAACAAGGCTATTTATAGCAAGACAGTTAAGTCAAAAACCCTTATCCAA
ACCTTACCTCAATTAATTTTTTTGTAGAAATTAGAAATGAGATCATTAGG
TTTCTTTGTTGATTTTTTTTAGGGATGCTAAATGAATGTTGAACTACAAA
ACAAGATTTAATTGATTCAAACTGGGAAAAAGAAAATCATCTTACAAAAA
GGTGTATATGTTTATAACTTGATATTAACTTGTAACATATGTATAGTATG
TTGGCTTTACCCCCTTCACATACGTAGGCTTTTGAAATTACCCCCATCCG
GGGGGTACAAGGGTTGGCGAATGAGGGGTATGTGCAGACGGGACCTCCGA
AAACCAACCCTTAGAGAGACTGATTTTTGCTGAAAAGGTGACCCTTAGAG
AGACTTTTTGAATTTTTTTTTTCGATTTTTGAAGAAAGTCATACCCTTAG
AGAGACTTTATTACAATTTCTTCTCTGGAAATCAAAAAATTTTCTAAAAA
TCTTGAAAAANATCAAAAAATGTCCTAAAAATCTTGAATATTCCGGCCCT
TTGAGAGACTAATTTAAAACTTTCTGATTTTTCAAACCCTTAGAGAGACT
TTGAAAGGTGAAAAAACCGACCCTTACCGTCCGCACATACCCATCATCCA
TTTTTGCCTAAGTAACCCCCCCCCAGGCCCCTACTAGTATCCCCCAGATT
GAAGGGTTTATACATGAGCAATTGTTTAAATTAAGGGATTCTTGGAAAAA
GTATATTCAACTTCAACTTCCTTTTGTGTTTGTTGATGAAAATACAGAAC
ATCCAGCCAAACTTTCGCTGAAATTTGGTTCTATTGAAAAATGTTGATTT
GTACTCTCAGACAGGTGGTCTGAAATTTTTGAATAAAACTATTGGCCAAG
GGGTGTTATAAGAATGTCTCGAGTGGAAAATTATACAAAGGCTGCTTATG
ACCGCACCCTCCCCCTCAGAGCATATGTACTTTATATGAATGGTCCTAAA
TGATGTCCATGTGTTCTGTTTTCAAATAAATTTAGCCATGTCACAAGTGT
TCTAGTGGAATATTAAACACTCAGTATTCTCTAATTTCAAATTTTATTTT
CAGGTCTTAAAAGCTAGTGGAAGAAGTGTCTGGATAGCAATTTTCAAGGT
AAGGATATTTCAATTTGAAATAATTCTATGAAATTTTTGGACTGTGGTAA
TTTTTGCTAATTATTTCAGGGTACACGAACTGTGACAAGGAGTTGTACAT
AGTAATTAGTTCTAACACCTGTTTTAAGGGGGTCTGAACCATGTGAAAAT
TTCTCTAAGGAAAGGAGATCCCATTGGAAAGGAATTGAAATGAATTCTTA
TTTTTCTGATCAGGAATGGAGACTTTTCGGTATTTGTAAACAATCTAATA
GGAAATTTGCCCAATTTATGACCCATTCCCCATTTTTAGGCAATATTAGT
GTGGTATGTGAGTGGTAAGCAGTCAGATTGAGAATCGGAATTTTTTAAGA
TTAGGGGGGTGCCAAGATGGGAAGATCCGACCTATCCACACTATGAAATT
ATGTATGTTATGTAAATTTTATTTCTCTTTTTCATTCTTTAGACCTTAAG
GATCGGACTGATTGGATTGGATCGGACAGATTGCTCATCGTCTCGACGTC
TTGTAGCGATCAGATTCGTCAACCTTTATAACATCAATCCCATGTACTAT
TGCCATTTGGATTTTGAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035055XLOC_035055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055704-exon-scaffold_257-1575043694:12319..12586TCONS_00055704-exon-scaffold_257-1575043694:12319..12586Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1575043694:10780..10874TCONS_00055704-exon-scaffold_257-1575043694:10780..10874Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1575043694:10484..10564TCONS_00055704-exon-scaffold_257-1575043694:10484..10564Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1575043694:9539..9583TCONS_00055704-exon-scaffold_257-1575043694:9539..9583Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1575043694:8964..9094TCONS_00055704-exon-scaffold_257-1575043694:8964..9094Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1510915933:12319..12586TCONS_00055704-exon-scaffold_257-1510915933:12319..12586Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1510915933:10780..10874TCONS_00055704-exon-scaffold_257-1510915933:10780..10874Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1510915933:10484..10564TCONS_00055704-exon-scaffold_257-1510915933:10484..10564Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1510915933:9539..9583TCONS_00055704-exon-scaffold_257-1510915933:9539..9583Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1510915933:8964..9094TCONS_00055704-exon-scaffold_257-1510915933:8964..9094Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1491911889:12319..12586TCONS_00055704-exon-scaffold_257-1491911889:12319..12586Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1491911889:10780..10874TCONS_00055704-exon-scaffold_257-1491911889:10780..10874Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1491911889:10484..10564TCONS_00055704-exon-scaffold_257-1491911889:10484..10564Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1491911889:9539..9583TCONS_00055704-exon-scaffold_257-1491911889:9539..9583Clytia hemisphaericaexon
TCONS_00055704-exon-scaffold_257-1491911889:8964..9094TCONS_00055704-exon-scaffold_257-1491911889:8964..9094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_257supercontigscaffold_257:8964..12586 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.213475	0.378128	0.653333	0.949604	0.753268	0	0.276168	0.51582	0.580955	0.788108	1.19804	0.68139	1.03194	1.37958	0.652309	1.07335	0	1.24245	0.423852	1.57907	0	0.135439	1.42571	2.69536	1.99517	0.942513
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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