TCONS_00055711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055711
Unique NameTCONS_00055711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055711 ID=TCONS_00055711|Name=TCONS_00055711|organism=Clytia hemisphaerica|type=transcript|length=470bp
CTTAGATCGCCGGGCACTCGATGATATGGTTGTCGAGTGCAGATTAGCCA
TTAATACTGCCAAGGACAACTATTTTTCTCGTCTTGGCAATTCTTTAAAT
GATCCAAACATCGGAGgtaagaaatactggtctaccCTTAAGCAGTTCCT
GAGCATACGAAAAACCCCTAAAATTCCACCCATTCGCGACGAAAGAAACG
TCCTTGTGAGCGATGTTTCTGAGAAAGCCGATATTTATAACTCTTTTTTT
GCAAAGCAATGTTCTTTGATCGAAACTGGCAGCGTGCTGCCACCTGAACA
ATTTTTCACTGACTCCAGGCTAAATAACCTTGAATTTGACGAAGAAAAAA
TCGCGTCAATTATTAATTCtatataataattatataataacgatatttcg
ttctattttcagaacttcatcaGGTATGATACTGCACAAGCGTTAACACA
TTTTTAAATGCTACAAAATC
Run BLAST on NCBI

protein sequence of TCONS_00055711-protein

>TCONS_00055711-protein ID=TCONS_00055711-protein|Name=TCONS_00055711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
LDRRALDDMVVECRLAINTAKDNYFSRLGNSLNDPNIGGKKYWSTLKQFL
SIRKTPKIPPIRDERNVLVSDVSEKADIYNSFFAKQCSLIETGSVLPPEQ
FFTDSRLNNLEFDEEKIASIINSI
Run BLAST on NCBI

transcript from alignment at scaffold_257:84677..85146

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055711 ID=TCONS_00055711|Name=TCONS_00055711|organism=Clytia hemisphaerica|type=transcript|length=470bp|location=Sequence derived from alignment at scaffold_257:84677..85146 (Clytia hemisphaerica)
GATTTTGTAGCATTTAAAAATGTGTTAACGCTTGTGCAGTATCATACCtg atgaagttctgaaaatagaacgaaatatcgttattatataattattatat aGAATTAATAATTGACGCGATTTTTTCTTCGTCAAATTCAAGGTTATTTA GCCTGGAGTCAGTGAAAAATTGTTCAGGTGGCAGCACGCTGCCAGTTTCG ATCAAAGAACATTGCTTTGCAAAAAAAGAGTTATAAATATCGGCTTTCTC AGAAACATCGCTCACAAGGACGTTTCTTTCGTCGCGAATGGGTGGAATTT TAGGGGTTTTTCGTATGCTCAGGAACTGCTTAAGggtagaccagtatttc ttacCTCCGATGTTTGGATCATTTAAAGAATTGCCAAGACGAGAAAAATA GTTGTCCTTGGCAGTATTAATGGCTAATCTGCACTCGACAACCATATCAT CGAGTGCCCGGCGATCTAAG

Coding sequence (CDS) from alignment at scaffold_257:84677..85146

>TCONS_00055711 ID=TCONS_00055711|Name=TCONS_00055711|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_257:84677..85146 (Clytia hemisphaerica)
ttatataGAATTAATAATTGACGCGATTTTTTCTTCGTCAAATTCAAGGT
TATTTAGCCTGGAGTCAGTGAAAAATTGTTCAGGTGGCAGCACGCTGCCA
GTTTCGATCAAAGAACATTGCTTTGCAAAAAAAGAGTTATAAATATCGGC
TTTCTCAGAAACATCGCTCACAAGGACGTTTCTTTCGTCGCGAATGGGTG
GAATTTTAGGGGTTTTTCGTATGCTCAGGAACTGCTTAAGggtagaccag
tatttcttacCTCCGATGTTTGGATCATTTAAAGAATTGCCAAGACGAGA
AAAATAGTTGTCCTTGGCAGTATTAATGGCTAATCTGCACTCGACAACCA
TATCATCGAGTGCCCGGCGATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035061XLOC_035061Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055711-proteinTCONS_00055711-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055711-exon-scaffold_257-1491911889:84677..85146TCONS_00055711-exon-scaffold_257-1491911889:84677..85146Clytia hemisphaericaexon
TCONS_00055711-exon-scaffold_257-1510915933:84677..85146TCONS_00055711-exon-scaffold_257-1510915933:84677..85146Clytia hemisphaericaexon
TCONS_00055711-exon-scaffold_257-1575043694:84677..85146TCONS_00055711-exon-scaffold_257-1575043694:84677..85146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_257supercontigscaffold_257:84677..85146 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (1.92928 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.27186 0.144838 0 0.418642 0 0.649218 0.243791 1.02488 0.601475 0.733437 1.19693 0.709868 1.18034 1.04276 0.457149 0.314798 0.25631 0.558664 1.39731 1.92928 0.26285 0.762751 0.155855 0 1.48797 1.042 0.20699 0.333971 0.375396 0.21326
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450Sequence
Match NameE-valueIdentityDescription
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