|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055706 ID=TCONS_00055706|Name=TCONS_00055706|organism=Clytia hemisphaerica|type=transcript|length=591bp
GTAAACAGCAGTCTTGAGCCGGATTCAAAGTTTCAGTCTGTAAAATAGTT
GACGgattaaaaaaactttgtcaACAAAACAAACGCGTTTCGGCGTTTCG
ACTGAGTCTGGTCTGAACAAATCACAAATATGGttttttactttatattt
ttattttatactaTATAGGTATTATAAAGTTCAACAATTTAGAAAGAAAG
gcATACTATACTCAGGGTCTCGCATAAAGGCTGAAAGGTACTGTCCTCAT
TGCTGGAGCTAGAATAAATCAATGAACAATAATCATTGGATAATCTGGTC
CTTCTTGGATCTTTTTATGTTTCCATCAATCATTGGTTGAATTTTTTCCA
GGGGATCATACTTCGTATTTTTTGATGAATGGCTGTTTGAAATTTAACCG
GAAAATTAACAACGCGAAGAAAAAATTGGCAGAAAGTTATACAAAACTTT
AAACTATGAAACTTAATGTAGAGTTAGtcacttttttattattattagtg
TTTAGGAATTTTAACTTACATCGTAATGTCAATTAATTATTTAATTTCAA
GacgatgaaaataaagaaaagacgACGTAATTAACCATTCA Run BLAST on NCBI transcript from alignment at scaffold_257:112381..115774- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055706 ID=TCONS_00055706|Name=TCONS_00055706|organism=Clytia hemisphaerica|type=transcript|length=3394bp|location=Sequence derived from alignment at scaffold_257:112381..115774- (Clytia hemisphaerica)
GTAAACAGCAGTCTTGAGCCGGATTCAAAGTTTCAGTCTGTAAAATAGTT
GACGGATTAAAAAAACTTTGTCAACAAAACAAACGCGTTTCGGCGTTTCG
ACTGAGTCTGGTCTGAACAAATCACAAATATGGTTTTTTACTTTATATTT
TTATTTTATACTATATAGGTATTATAAAGTTCAACAATTTAGAAAGAAAG
GTAAGCATTTTTCCAGTGTGCTTCATCATCAGACAACTTGGGGCTCCTGT
CAGGACAAGGAAAAGGAAAATATTGGAAGCAATCCAAAAACAAGTTATAC
AGTAAGATGTGCATGTGGGGATGCTCCGCTGAGGTTTGAAAAATGGACCC
TACGTGGAACTCGAAATTTGCAAAAAAAGTGACCCTGAATTAATGGGACT
GAAATTCCAAAATGTTCTCAAACTTTTTACTCAAATTTTCAAAAAATAGG
CACCCTACGAGGAACTGATTTTTCTGTTTCGGTGTTTTTTCGACCCTACC
TGGGACTCATCGTACAAGCATCCCCATAACCCATCTTGCCCTAGTAGTAG
TACCCCCCCCCTGGTGGGGGTTAGTTTAATTCTTTAGGTGGGGAGTTTTG
GTGTTTTGGTGAATGGTAAAGTTAATTTTTTCTCATGTCATATTTTATAA
ATATAACTCATATTGGAAGCAATCCAAAAACAAGTTATACAGTAAGATGT
GGGGATGCTCCGCTGAGGTTTGAAAAATGGACCCTACGTGGAACTCGAAA
CTTGCAAAAAAAGTGACCCTGAATTAATGGGACTGAAATTCCAAAATGTT
CTCAAACTTTTTACTCAAATTTTCCAAAAATAGGCACCCTACGAGGAACT
GATTTTTCTGTTTCGGTGTTTTTTCGACCCTACCTGGGACTCGTACGAGC
ATCCCCATAACCCATCTTGCCCTAGTAGTAGTACCCCCACCCCTGGTGGG
GGTTAGTTTAATTCTTTAGGTGGGGAGTTTTGGTGTTTTGGTGAATGGTA
AAGTTATTTTTTTCTCATGTCATATTTTATAAATATAACTCTGTTACTGT
ACTAAACTTTTTTCTTTTTGTCCAGCAGGAGCTTTTGTTGCCTTACGTTC
GCCAGAGAAATATTCATGATAATGTTGTTTCTTTCAATTTTCAGTGGGCC
GCTGCAGTTAAAAAATTTAAAGCATCTACTTTATAATCATCAAATCAATA
AAGGTGGCCATCCACATAGTACCTAAGTACGCAGTGAAGGGGGGAGAGGG
GGGGTTAAGCAAAAGCGTACATCTATTGTTTAAATGACATCATTTCTATT
GTTCTCTGCATACAAGGGGGAGGGGGGTCAAATTTTCGGAAAATATTTGC
GTACATACTATATGGACGGCCCCAAGGTCATATATCTTCCGGTAATTAGT
TCAAACAAAATAAAGCAGGAATATTCTAGATATTAAGATTTTGTTCTGTG
TGTGTTAGGCTGTACAGCTAGTCTATATATTAATAGCGGCAGTCTGTATG
TCGTTTTTTCTTTCTGTGCTACTTTCCTTTTCGCACGCAATGTTTTTGTT
CTTCCAAAGTATGACTTTTAGTTCTTCCAAAGTATGACTTTTAGTTCTAG
CTCCACAAATGTGTGTCATCAGATTCGCGCCATCGATAAGGCATTGTTTC
TCTAAACAGTATATATGATAATTTTCAGTTTTTAAGACATGCCATTAAAC
TCAATTACTCGCTCAATTTTTCAGTGTGGAACCCGTTCTCCTCAAATAGT
TGTTTAGGTGAATGCGACACTCTATTGAATAACAAATTACTCCACATAAA
TTATCTGCCCTCAGCCAGTAAAAACGTAATAAATCATCTTTTCTCTAGGT
AACTGCTGTAGAATATTTAGTTATTCAATAGAGGGTGTTGCGTTATGGTT
GCACAGCTTGCCTGGGTAACCATGCAGTTCATCTGGAGACATTTACCCTA
GACTGTCTGGGTCAGCAGAGTCCACGCCAAATCTTCTTCAGTTTACACTG
AGGTCTACTCCAAAAGAAATTTTGGGCAACAAAATTGCAGGATAGAAATT
TGGGTGATGCTGTAAGACTCCCCAAAAAAACAGGTCCAGGGCTGAATCCA
CCGAAAGCCCACATCCTTATATTGCAGTACTCATATTTTTCTCAATGTGG
AATTCAGTAGGAAAAGTACATTCATAGTTTCCTCCTGAATCAGTCTCCCT
TCAGAAATATTAGGCTGTCCCCTTTTTAAGTTTTTTTTCCTTTGTGAAAT
CCCATTCTCGATCCACTTTCATTGAAAATTCTTTTGAAATCCCTCCCCAG
TAGAAATGGGGGAAGAAATTATGACATGGTTGTTTTGGAATTGATTATTA
TCTCTCATTTTTTTATATTTTTAGGCATACTATACTCAGGGTCTCGCATA
AAGGCTGAAAGGTAATCACAAAAAAATTGACTTCAATTAATACTTTTCAT
TGATGTTCAACGTGAAAGACGCTTTTCCTAGTTGTAAAAAAAGTATGGTA
TTATATATTCTTAAATTTTTATTTGTTCAGAAAATGTATCAATCACTCAA
TTTATTTCTTATTATCATCCTTAAAGATGTAAAGACGAAAGTTACAGATA
CATTCATTTTTTTATAAACATACTAAAGCTCAAATTTCCAGAAAAATTAA
GCATATGCTAAGCATACCTTGAGGCTCAGCCAAAGAAATTTTTAGAATCA
TAATTTCCAAAACTTCAGAAAATAAAAGAAAAATGAAGAAGAGAATTACA
AACAAAGTTGGTGATTCGAAATCATATGGTAAACATTCGAAAACAATGCG
CGAAACTTTTTACCTCCCGTCCTTCATAATTTTTTTACCAAGCATATGGT
TAAGCATAATTCGAGGCTCAACATTGAGCTTTACTTAAGCATAGTGAGCT
TCAGCCGAAATTTACCGTAAATGCTTAAAAAGATGAGTGTATCCCAAACA
CCTTGCTCGTTGGTGTAATGGAATTTAAATTATTAATTAGGCTATTTATA
TTGCAAAAAAAAATCTATACATTTATTTCCTTTTCTTCAGGTACTGTCCT
CATTGCTGGAGCTAGAATAAATCAATGAACAATAATCATTGGATAATCTG
GTCCTTCTTGGATCTTTTTATGTTTCCATCAATCATTGGTTGAATTTTTT
CCAGGGGATCATACTTCGTATTTTTTGATGAATGGCTGTTTGAAATTTAA
CCGGAAAATTAACAACGCGAAGAAAAAATTGGCAGAAAGTTATACAAAAC
TTTAAACTATGAAACTTAATGTAGAGTTAGTCACTTTTTTATTATTATTA
GTGTTTAGGAATTTTAACTTACATCGTAATGTCAATTAATTATTTAATTT
CAAGACGATGAAAATAAAGAAAAGACGACGTAATTAACCATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055706-exon-scaffold_257-1575043694:115575..115774 | TCONS_00055706-exon-scaffold_257-1575043694:115575..115774 | Clytia hemisphaerica | exon |
| TCONS_00055706-exon-scaffold_257-1575043694:113364..113400 | TCONS_00055706-exon-scaffold_257-1575043694:113364..113400 | Clytia hemisphaerica | exon |
| TCONS_00055706-exon-scaffold_257-1575043694:112381..112734 | TCONS_00055706-exon-scaffold_257-1575043694:112381..112734 | Clytia hemisphaerica | exon |
| TCONS_00055706-exon-scaffold_257-1510915933:115575..115774 | TCONS_00055706-exon-scaffold_257-1510915933:115575..115774 | Clytia hemisphaerica | exon |
| TCONS_00055706-exon-scaffold_257-1510915933:113364..113400 | TCONS_00055706-exon-scaffold_257-1510915933:113364..113400 | Clytia hemisphaerica | exon |
| TCONS_00055706-exon-scaffold_257-1510915933:112381..112734 | TCONS_00055706-exon-scaffold_257-1510915933:112381..112734 | Clytia hemisphaerica | exon |
| TCONS_00055706-exon-scaffold_257-1491911889:115575..115774 | TCONS_00055706-exon-scaffold_257-1491911889:115575..115774 | Clytia hemisphaerica | exon |
| TCONS_00055706-exon-scaffold_257-1491911889:113364..113400 | TCONS_00055706-exon-scaffold_257-1491911889:113364..113400 | Clytia hemisphaerica | exon |
| TCONS_00055706-exon-scaffold_257-1491911889:112381..112734 | TCONS_00055706-exon-scaffold_257-1491911889:112381..112734 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_257 | supercontig | scaffold_257:112381..115774 - |
Blast
The following BLAST results are available for this feature:
|
