TCONS_00055733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055733
Unique NameTCONS_00055733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length182

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055733 ID=TCONS_00055733|Name=TCONS_00055733|organism=Clytia hemisphaerica|type=transcript|length=182bp
CCGAGGGAAGGGAGTTTCGATATGACTACAATGATTGTAACTTATTCCGG
AGAAAGCAGGACGAGTTCAAGAAATACAGAAAGCCACTACTAAAGAGCGA
TCTGTCTGCCAGCAAAGAAGAAGGACAAATTATCGAAAAAGAGAATTTAA
ATCCAGATGTAGTTCCACCAACTCCAGAGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_258:231217..232075-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055733 ID=TCONS_00055733|Name=TCONS_00055733|organism=Clytia hemisphaerica|type=transcript|length=859bp|location=Sequence derived from alignment at scaffold_258:231217..232075- (Clytia hemisphaerica)
CCGAGGGAAGGGAGTTTCGATATGACTACAATGATTGTAACTTATTCCGG AGAAAGCAGGTATTTGAGGCATTGCTACTAAATTAAGTTGATTTTTCCTA AATTTTAAAATTTCCTTAACTTTTCATTCTAAATTCTTACAAAGGAGGTC ACGCCAAATTAAAAAAAGACGTTTAACCATTTCAAATTCCTAACTTATCN CAAAGGAGGTCACGCCAAATTAGAAAAAGACGTTTTACCATTTCAAATTC CTAACTTATCGATTTCTATGCCTCTGGTCTTGATTCAAACCTTTCCCTCC TATTCATAGGACGAGTTCAAGAAATACAGAAAGCCACTACTAAAGAGCGA TCTGTCTGCCAGGTATTATTTTAAGAGTTATAATTTGATTTTTTATTCAT TTTCAATCAGATTCAATCAAAAGTCTTAATTATCACTGAAACTTCCAGAT TTTAAATTTTTTAAACGTAGATAGGTTTTGACATGATATTTAGATTGCTA ATAAAACCTTTTTTTTCGTTGCAGCAAAGAAGAAGGACAAATTATCGAAA AAGAGGTATTTTGATATTGTATTACCAATTACATCCACTTTTAACGAATT ATCGTTATTGTATAGATTGCTATACCCCGATTTTCATTATTCATTACCGA GGTCAAAATATTAACCTCAAGGTCATGTGAATATTAATTCCAAAGTAACC TCTGTTAATATTAAATATCAAAGTCCAGCATTGATTATTACACCTACCTA TTCTCAGCAGACCCATGATTTATCTTTTAATCCAATTATTTCAGTATCAT TCTTATTTGATTCAATTTAGAATTTAAATCCAGATGTAGTTCCACCAACT CCAGAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035079XLOC_035079Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055733-exon-scaffold_258-1575043694:232017..232075TCONS_00055733-exon-scaffold_258-1575043694:232017..232075Clytia hemisphaericaexon
TCONS_00055733-exon-scaffold_258-1575043694:231714..231766TCONS_00055733-exon-scaffold_258-1575043694:231714..231766Clytia hemisphaericaexon
TCONS_00055733-exon-scaffold_258-1575043694:231521..231551TCONS_00055733-exon-scaffold_258-1575043694:231521..231551Clytia hemisphaericaexon
TCONS_00055733-exon-scaffold_258-1575043694:231217..231255TCONS_00055733-exon-scaffold_258-1575043694:231217..231255Clytia hemisphaericaexon
TCONS_00055733-exon-scaffold_258-1510915933:232017..232075TCONS_00055733-exon-scaffold_258-1510915933:232017..232075Clytia hemisphaericaexon
TCONS_00055733-exon-scaffold_258-1510915933:231714..231766TCONS_00055733-exon-scaffold_258-1510915933:231714..231766Clytia hemisphaericaexon
TCONS_00055733-exon-scaffold_258-1510915933:231521..231551TCONS_00055733-exon-scaffold_258-1510915933:231521..231551Clytia hemisphaericaexon
TCONS_00055733-exon-scaffold_258-1510915933:231217..231255TCONS_00055733-exon-scaffold_258-1510915933:231217..231255Clytia hemisphaericaexon
TCONS_00055733-exon-scaffold_258-1491911889:232017..232075TCONS_00055733-exon-scaffold_258-1491911889:232017..232075Clytia hemisphaericaexon
TCONS_00055733-exon-scaffold_258-1491911889:231714..231766TCONS_00055733-exon-scaffold_258-1491911889:231714..231766Clytia hemisphaericaexon
TCONS_00055733-exon-scaffold_258-1491911889:231521..231551TCONS_00055733-exon-scaffold_258-1491911889:231521..231551Clytia hemisphaericaexon
TCONS_00055733-exon-scaffold_258-1491911889:231217..231255TCONS_00055733-exon-scaffold_258-1491911889:231217..231255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:231217..232075 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
CCGAGGGAAGGGAGTTTCGATATGACTACAATGATTGTAACTTATTCCGGAGAAAGCAGGACGAGTTCAAGAAATACAGAAAGCCACTACTAAAGAGCGATCTGTCTGCCAGCAAAGAAGAAGGACAAATTATCGAAAAAGAGAATTTAAATCCAGATGTAGTTCCACCAACTCCAGAGAAG20406080100120140160180Sequence
Match NameE-valueIdentityDescription
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