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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055763 ID=TCONS_00055763|Name=TCONS_00055763|organism=Clytia hemisphaerica|type=transcript|length=1254bp
atcttTTGATGCTTCTGCTCTCTACCCTCCATTGTCATAACACCTAGTCC
aagtttcaactttttcataCAATCAGCTATATGAGCTGGAGCAACTACAG
CAAAACACCACATGCTCGGTGTAAGTTTTGAATCAAATAATGCACAACTT
AAAAACAAGGATCGTCCAGTGATTAAAACATCATCAACATCAACATCGGT
TAAATTTTGTATACGCACTGAGTATGAGACCATTTTTCGAAGATGAAAAG
CCTGATAAAAATaaatgaacaatttttcgaGGCGATCTGATGATATTAGC
GATTGAAGGAGTTCAACCatctttggaaaaaattttaagaaatttccACT
TTCTTTACCACGAAACCGAAAACCAAAATCTCTTTCCTTTTGCTTTTCTT
TGTTGTCATTAAACCATGAAATCAGTTTCTTAGCAAGATAGTTGCAATTC
ATATCAGTTTTGACAAAActgatgaaaattttaaaaatgttatcaTCCTT
GATATCCTTGAACTCTTTGACTGATGATGGCAATTTTGCTTCAACTAGAA
CAATACTTAAGagaattttcatgaaaatttctttgcaaCAGTTATTTTTA
AGATGTAAGGGTTCACAACGGGCAAGATCAACAAACTTTCCTAAACGCGG
CGCAAACTCTTGTCGGCTCTTCAAGCCAGCAATGTAAGTTGTTAATGGAG
TTCTCGACTTGGTGGTGTTTTTCTTGTGCAATTCCTGTTTTTTTATGGAC
ACTTTTTTGGCATCGTTCACACGTTTTTCGTAAGAAAAGGGTTTCCATTC
AGCATTATCATCAGTCATCGAGAATCTTTTAGTAATATCATTACTTTCCG
CACCACAAACATTTGCAAATGTAGTGAAATAAGTTGCTTTGTTGTTAAGT
TCTCCGGCAATGAAAGCTAGCATTTTCATGTCGTTTGGAATAGCCTGTAC
TTTGAACTCTACCTTGAAAAGCTCATCATTAATAAACACATCAAAAACAT
TACTTTCAAGGAACACCAAGTCACTTAAGAGTTTTCTCAAATAACGCTGG
ACAACGATACCACTCTCCTTCACATGTGCAccaaaaactaagaaattttc
aaaactgcTGGCAATTCTCTTTCCAACATTgagaaaagataaaagaaaag
CTGTTCCTGCCTCAGGGGCTTCATCACCACCAATTGCAATGAGAAACAAA
AACGAAGATTTATCTTTTCTCTCGAAACCatcaaaagttaaaagtttATC
GATT Run BLAST on NCBI protein sequence of TCONS_00055763-protein >TCONS_00055763-protein ID=TCONS_00055763-protein|Name=TCONS_00055763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
IDKLLTFDGFERKDKSSFLFLIAIGGDEAPEAGTAFLLSFLNVGKRIASS
FENFLVFGAHVKESGIVVQRYLRKLLSDLVFLESNVFDVFINDELFKVEF
KVQAIPNDMKMLAFIAGELNNKATYFTTFANVCGAESNDITKRFSMTDDN
AEWKPFSYEKRVNDAKKVSIKKQELHKKNTTKSRTPLTTYIAGLKSRQEF
APRLGKFVDLARCEPLHLKNNCCKEIFMKILLSIVLVEAKLPSSVKEFKD
IKDDNIFKIFISFVKTDMNCNYLAKKLISWFNDNKEKQKERDFGFRFRGK
ESGNFLKFFPKMVELLQSLISSDRLEKLFIYFYQAFHLRKMVSYSVRIQN
LTDVDVDDVLITGRSLFLSCALFDSKLTPSMWCFAVVAPAHIADCMKKLK
LGLGVMTMEGREQKHQK Run BLAST on NCBI transcript from alignment at scaffold_258:279163..280416 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055763 ID=TCONS_00055763|Name=TCONS_00055763|organism=Clytia hemisphaerica|type=transcript|length=1254bp|location=Sequence derived from alignment at scaffold_258:279163..280416 (Clytia hemisphaerica)
AATCGATaaacttttaacttttgatGGTTTCGAGAGAAAAGATAAATCTT
CGTTTTTGTTTCTCATTGCAATTGGTGGTGATGAAGCCCCTGAGGCAGGA
ACAGcttttcttttatcttttctcAATGTTGGAAAGAGAATTGCCAgcag
ttttgaaaatttcttagtttttggTGCACATGTGAAGGAGAGTGGTATCG
TTGTCCAGCGTTATTTGAGAAAACTCTTAAGTGACTTGGTGTTCCTTGAA
AGTAATGTTTTTGATGTGTTTATTAATGATGAGCTTTTCAAGGTAGAGTT
CAAAGTACAGGCTATTCCAAACGACATGAAAATGCTAGCTTTCATTGCCG
GAGAACTTAACAACAAAGCAACTTATTTCACTACATTTGCAAATGTTTGT
GGTGCGGAAAGTAATGATATTACTAAAAGATTCTCGATGACTGATGATAA
TGCTGAATGGAAACCCTTTTCTTACGAAAAACGTGTGAACGATGCCAAAA
AAGTGTCCATAAAAAAACAGGAATTGCACAAGAAAAACACCACCAAGTCG
AGAACTCCATTAACAACTTACATTGCTGGCTTGAAGAGCCGACAAGAGTT
TGCGCCGCGTTTAGGAAAGTTTGTTGATCTTGCCCGTTGTGAACCCTTAC
ATCTTAAAAATAACTGttgcaaagaaattttcatgaaaattctCTTAAGT
ATTGTTCTAGTTGAAGCAAAATTGCCATCATCAGTCAAAGAGTTCAAGGA
TATCAAGGAtgataacatttttaaaattttcatcagTTTTGTCAAAACTG
ATATGAATTGCAACTATCTTGCTAAGAAACTGATTTCATGGTTTAATGAC
AACAAAGAAAAGCAAAAGGAAAGAGATTTTGGTTTTCGGTTTCGTGGTAA
AGAAAGTggaaatttcttaaaattttttccaaagatGGTTGAACTCCTTC
AATCGCTAATATCATCAGATCGCCtcgaaaaattgttcatttATTTTTAT
CAGGCTTTTCATCTTCGAAAAATGGTCTCATACTCAGTGCGTATACAAAA
TTTAACCGATGTTGATGTTGATGATGTTTTAATCACTGGACGATCCTTGT
TTTTAAGTTGTGCATTATTTGATTCAAAACTTACACCGAGCATGTGGTGT
TTTGCTGTAGTTGCTCCAGCTCATATAGCTGATTGtatgaaaaagttgaa
acttGGACTAGGTGTTATGACAATGGAGGGTAGAGAGCAGAAGCATCAAa
agat Coding sequence (CDS) from alignment at scaffold_258:279163..280416 >TCONS_00055763 ID=TCONS_00055763|Name=TCONS_00055763|organism=Clytia hemisphaerica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_258:279163..280416 (Clytia hemisphaerica)
ATCGATaaacttttaacttttgatGGTTTCGAGAGAAAAGATAAATCTTC
GTTTTTGTTTCTCATTGCAATTGGTGGTGATGAAGCCCCTGAGGCAGGAA
CAGcttttcttttatcttttctcAATGTTGGAAAGAGAATTGCCAgcagt
tttgaaaatttcttagtttttggTGCACATGTGAAGGAGAGTGGTATCGT
TGTCCAGCGTTATTTGAGAAAACTCTTAAGTGACTTGGTGTTCCTTGAAA
GTAATGTTTTTGATGTGTTTATTAATGATGAGCTTTTCAAGGTAGAGTTC
AAAGTACAGGCTATTCCAAACGACATGAAAATGCTAGCTTTCATTGCCGG
AGAACTTAACAACAAAGCAACTTATTTCACTACATTTGCAAATGTTTGTG
GTGCGGAAAGTAATGATATTACTAAAAGATTCTCGATGACTGATGATAAT
GCTGAATGGAAACCCTTTTCTTACGAAAAACGTGTGAACGATGCCAAAAA
AGTGTCCATAAAAAAACAGGAATTGCACAAGAAAAACACCACCAAGTCGA
GAACTCCATTAACAACTTACATTGCTGGCTTGAAGAGCCGACAAGAGTTT
GCGCCGCGTTTAGGAAAGTTTGTTGATCTTGCCCGTTGTGAACCCTTACA
TCTTAAAAATAACTGttgcaaagaaattttcatgaaaattctCTTAAGTA
TTGTTCTAGTTGAAGCAAAATTGCCATCATCAGTCAAAGAGTTCAAGGAT
ATCAAGGAtgataacatttttaaaattttcatcagTTTTGTCAAAACTGA
TATGAATTGCAACTATCTTGCTAAGAAACTGATTTCATGGTTTAATGACA
ACAAAGAAAAGCAAAAGGAAAGAGATTTTGGTTTTCGGTTTCGTGGTAAA
GAAAGTggaaatttcttaaaattttttccaaagatGGTTGAACTCCTTCA
ATCGCTAATATCATCAGATCGCCtcgaaaaattgttcatttATTTTTATC
AGGCTTTTCATCTTCGAAAAATGGTCTCATACTCAGTGCGTATACAAAAT
TTAACCGATGTTGATGTTGATGATGTTTTAATCACTGGACGATCCTTGTT
TTTAAGTTGTGCATTATTTGATTCAAAACTTACACCGAGCATGTGGTGTT
TTGCTGTAGTTGCTCCAGCTCATATAGCTGATTGtatgaaaaagttgaaa
cttGGACTAGGTGTTATGACAATGGAGGGTAGAGAGCAGAAGCATCAAaa
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055763-exon-scaffold_258-1491911889:279163..280416 | TCONS_00055763-exon-scaffold_258-1491911889:279163..280416 | Clytia hemisphaerica | exon |
| TCONS_00055763-exon-scaffold_258-1510915933:279163..280416 | TCONS_00055763-exon-scaffold_258-1510915933:279163..280416 | Clytia hemisphaerica | exon |
| TCONS_00055763-exon-scaffold_258-1575043694:279163..280416 | TCONS_00055763-exon-scaffold_258-1575043694:279163..280416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_258 | supercontig | scaffold_258:279163..280416 . |
Blast
The following BLAST results are available for this feature:
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