TCONS_00055775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055775
Unique NameTCONS_00055775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1158

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055775 ID=TCONS_00055775|Name=TCONS_00055775|organism=Clytia hemisphaerica|type=transcript|length=1158bp
ctgCTTTTTCAATATCTTTTCATTTGCAGGAAAAAAAGTTGGATTTACAC
ATTATATAAAATGGACGATCTTGTGGTGCACATTGTTTCTGTCATCGTTG
GGTTTATGACAGTACTTGGCTTGGTCATTCTGCTTGCTCCAAGATATATC
TTCCTTCTTAGCACCAGATGGAAGACGTGGTGGTCTTCATTCGGGGGTAA
GAAATTCATAAAAGTTGAGAAGAATGTTTGGGCATGTTATTGTGAACGAA
ACCAACTAAAAAATACTAATGCTTCCATTTTACTTCTTCATGGATTCGCT
GGCTCGACTTTCGATTTTGTCCCTTTTGTTGAAAAACTACCCAAGAACCT
ACATATTATTGCATTAGACCTGTTGAACCACGGTGAAAGTTCAACTATTA
CCGATCGTGACGTCACCGTTACTGATATGGCTCGATTCGTGAAAAAGGTG
ATTATAGATTATTTTTCGGAACTGTATCAANAACCGATATGGTTCGATTC
GTGAAAAAGTTTGTGGAGAAAGTGGATTTACATCGACGAAAGTTCCACTT
GGtttctttttcatactcaaCAACAGTAGCTTGCCAATACACATCCAATT
ACTCTGACGACGTAGCTTCTTTGGTATTATGTGCACCACCGCACATCTTG
AATAAAGTTCAACCAGAAGACATGATATTTGGCTGCAATAAGGACTATCT
GTCATATCTTGATCATCAAGCTAATGGGAAGTTGACTCATCCTTCCCCCT
TCATTATCCGCGCTAAAATCgactttgaaaacaaaaaggCTACTGGCTAT
ATTTCAGTTGCCAGAGGACAGATGTCTTTTGCATTCTCCAAAGACTTATT
GAATTCAATCAAAACCAAATGCTTGATGGTATGGGGTGATCAAGACAAAA
TATGCTTAACGAAAGGCCTGGATCActttaaagaacattttgatGGATGC
GAAAGTGTGCTTGTAGCTGATTGTGGACATTTACTCTTCCAAACGAACGT
CAACGAAGTATCCTCTGCAATCATTGCATGGGTGACGAAACAACAGAAAG
AACACTCTATTCCTCATTCTCAAGGCTTAAAACCTTCTATGCGTTAGACA
GCACAAATTAGTTGATTAGTATTTTATTGAAATTatattactctcgggta
cctaacaN
Run BLAST on NCBI

transcript from alignment at scaffold_259:9682..14157+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055775 ID=TCONS_00055775|Name=TCONS_00055775|organism=Clytia hemisphaerica|type=transcript|length=4476bp|location=Sequence derived from alignment at scaffold_259:9682..14157+ (Clytia hemisphaerica)
ctgCTTTTTCAATATCTTTTCATTTGCAGGAAAAAAAGTTGGATTTACAC
ATTATATAAAATGGACGATCTTGTGGTGCACATTGTTTCTGTCATCGTTG
GGTTTATGACAGTACTTGGCTTGGTCATTCTGCTTGCTCCAAGATATATC
TTCCTTCTTAGCACCAGGTGAGGCTTTTTGTATCCTGTTTATTTAAGTTA
TTATTGTATCGACATTTTTCTTGCTCTTCTGTCCTGTCAAATAGTGATAA
ATTTATCTCTCTCAAATCCTGTGTTCACTTCAGTTGAGCTAAAATCTGAG
AATGTCTATGTGTGCGAGTGTGTGCGtgtgtcccaaaactttggggcatg
ctggagacttcaaaattggttggatttggctgaaaaaaaaatttaggggC
CTGGTCACTTGTTTTTTATGTGTTTTTGGCTCCATGAATAATATGCTGAC
AAAAATAGCTGTGTAAAAAACTTTCTCAAGTGGTACTTAACGATAAAATT
AATGCAATTTATTTTCACCTTAGATGGAAGACGTGGTGGTCTTCATTCGG
GGGTAAGAAATTCATAAAAGTTGAGAAGAATGTTTGGGCATGTTATTGTG
AACGAAACCAACTAAAAAATACTAATGCTTCCATTTTACTTCTTCATGGA
TTCGCTGGCTCGACTTTCGATTTTGTCCCTTTTGTTGAAAAACTACCCAA
GAACCTACATATTATTGCATTAGACCTGTTGAACCACGGTGAAAGTTCAA
CTATTACCGATCGTGACGTCACCGTTACTGATATGGCTCGATTCGTGAAA
AAGGTGATTATAGATTATTTTTCGGAACTGTATCAANAACCGATATGGTT
CGATTCGTGAAAAAGGTGATTAGATTATTATTTTTCGgaattatataaaa
aagtaaCATAACAATTTCTGTCATCACTAAAGATTTACATTTGGCAAgat
tggtaaaaaaaatttatattatgTGTTATTGGTTCCTGAATAAATTCCGA
GCTTTGTTTTATCCTTTTCATAGTTTGTGGAGAAAGTGGATTTACATCGA
CGAAAGTTCCACTTGGtttctttttcatactcaaCAACAGTAGCTTGCCA
ATACACATCCAATTACTCTGACGACGTAGGTATGGTGGCTAAAACATTCG
AAATCTGTCATTCTAcaaggcttctgctcatcctttGTCGAATAGAGTTT
CTAACATAGGAAGTATGTTGTATAAAgctctgcgattcagactatcaTTC
CACTGGATTTTCAGATAAAGAATTTTGTgtataatttattttcattattc
aaattgatttttacaatccttttctttttcttcagctGTAAAATATACCA
ATAGGTCAGTGAGACAAGGCTGCTCTATATATAGACTCGGGACTCATGAT
TCTCTCGCGTAATGATTGTCTCTTTTTTCCTCACTCCAGCTTCTTTGGTA
TTATGTGCACCACCGCACATCTTGAATAAAGTTCAACCAGAAGACATGAT
ATTTGGCTGCAATAAGGACTATCTGTCATATCTTGATCATCAAGCTAATG
GGAAGTTGACTCATCCTTCCCCCTTCATTATCCGCGCTAAAATCgacttt
gaaaacaaaaaggCTACTGGCTATATTTCAGGTTGGTAATGTTCATTCAT
TATAACTGGCCTATCTTgctcttaaaggttttgtttttaaataattgtga
tatcgtttgcttactcatctattttaattcacaagctttttggacctacc
ccggtggaggtcctataaattaacccgtgttcgttagttagttagttcgt
tagttaccaacttttctcgagattggctcattcaatttttctgNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNaacggttttccttcattttttcaacttatactcgacagat
tttcatgattttttgcacaatgatgtaaaatggcaatgcccaaaatgtga
cagagcccaattttcgtaaaagaaatttttccggccgctagaaccggaaa
tgtcccgaaaaaagcggtttttttgagattttctcgagattttcgcatta
gttttttgcgattttttgcacatagatgcacattagtactgccgaaaagg
tgtcgaaaaccgtttgtcgaaaaattttttttgtgccggaaatcgtcgtt
tttttcacatttccgtcacattttttcaacttatttaattgtttctttac
agaaaaatgttctttatgatgatgcccaaaacttNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaaaccggcgtaa
aacggttttccttcattttttcaacttatactcgacagattttcatgatt
ttttgcacaatgatgtaaaatggcaatgcccaaaatatgaCTCCTCAATC
TGtgatgaaataatgaaaaatgaaaactaaatgttttttttacttcagtt
ttaattttctctgaatgattgattaaagtgtcgatattatttttctttca
ccgttaaacatcgatgcgtttctNNTTCGATTgccacggatgtggagcaa
aatcggccagaaagaggaaaaaacattttttgcttatatcagcataatat
aacaaaaggcagacactgtcctgatatgaaatatgtgtctgatatccTTT
ATCCCTTAGTTGCCAGAGGACAGATGTCTTTTGCATTCTCCAAAGACTTA
TTGAATTCAATCAAAACCAAATGCTTGATGGTATGGGGTGATCAAGACAA
AGTAAGCCTTTCAAAAAGCTTTTCACATTTTCCCCCAGGAATTGCTTTTC
ATTCAGGACCGAACGTCTTAGGATCAACCCTAGGTTTCCTTATTTAAATT
TGTTAGTTTCGTGAAAGCAGGGCGCAGACAAATAAATCTACAAATAAATC
TTGAAAACGAATATTATTCAATAATCTTAAGAAAAACAGAGAGATTTCGT
TTTAAATTCTTGTTGACTCAGTGGAACTTAGgcaatttaatttttcagat
ttctCAGTATTGTATTTTaaggtaaaaaaaatatatcagaTTTTGGAAAT
TCATTGAGGTGTCTCTggagttttgaattttttaaaagtcttCCTCAAAA
GtcgagttttcaaaaatcttgaatcTTTTAGATTATTCTGCATGGAAATA
TCTTTCTAACGGCATTTAGCTTTTTGAGATTACATAGATACTTGCTGAGA
AATTGTTAAAGGTAAAGTGTTCACATtgttttgagacagactttaagaaG
ATGCTGCTctagatttcaaaattatttcagtCAACTCACCTCAATGAAAA
GAATACGTAAGGAGAAATTACGCCTTTCTCTAGTCCAAGAGTCTGGGAAA
ATGATTCATGTCTGCATGTCTGATTATATTCATATTCCTATATGTTACTC
CTTTCTCTTCCTGACAGATATGCTTAACGAAAGGCCTGGATCActttaaa
gaacattttgatGGATGCGAAAGTGTGCTTGTAGCTGATTGTGGACATTT
ACTCTTCCAAACGAACGTCAACGAAGTATCCTCTGCAATCATTGCATGGG
TGACGAAACAACAGAAAGAACACTCTATTCCTCATTCTCAAGGCTTAAAA
CCTTCTATGCGTTAGACAGCACAAATTAGTTGATTAGTATTTTATTGAAA
TTatattactctcgggtacctaacaN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035116XLOC_035116Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055775-exon-scaffold_259-1491911889:9682..9848TCONS_00055775-exon-scaffold_259-1491911889:9682..9848Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1510915933:9682..9848TCONS_00055775-exon-scaffold_259-1510915933:9682..9848Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1575043694:9682..9848TCONS_00055775-exon-scaffold_259-1575043694:9682..9848Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1491911889:10205..10546TCONS_00055775-exon-scaffold_259-1491911889:10205..10546Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1510915933:10205..10546TCONS_00055775-exon-scaffold_259-1510915933:10205..10546Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1575043694:10205..10546TCONS_00055775-exon-scaffold_259-1575043694:10205..10546Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1491911889:10705..10810TCONS_00055775-exon-scaffold_259-1491911889:10705..10810Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1510915933:10705..10810TCONS_00055775-exon-scaffold_259-1510915933:10705..10810Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1575043694:10705..10810TCONS_00055775-exon-scaffold_259-1575043694:10705..10810Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1491911889:11121..11312TCONS_00055775-exon-scaffold_259-1491911889:11121..11312Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1510915933:11121..11312TCONS_00055775-exon-scaffold_259-1510915933:11121..11312Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1575043694:11121..11312TCONS_00055775-exon-scaffold_259-1575043694:11121..11312Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1491911889:13141..13232TCONS_00055775-exon-scaffold_259-1491911889:13141..13232Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1510915933:13141..13232TCONS_00055775-exon-scaffold_259-1510915933:13141..13232Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1575043694:13141..13232TCONS_00055775-exon-scaffold_259-1575043694:13141..13232Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1491911889:13899..14157TCONS_00055775-exon-scaffold_259-1491911889:13899..14157Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1510915933:13899..14157TCONS_00055775-exon-scaffold_259-1510915933:13899..14157Clytia hemisphaericaexon
TCONS_00055775-exon-scaffold_259-1575043694:13899..14157TCONS_00055775-exon-scaffold_259-1575043694:13899..14157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_259supercontigscaffold_259:9682..14157 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.5963	10.0261	6.67115	7.84639	9.19765	12.2015	10.1613	9.62379	8.89063	11.8198	7.44932	7.70561	5.89264	6.13808	9.40128	12.0865	8.55387	11.0513	4.55023	3.41812	6.68608	3.45098	22.6114	16.4225	2.61634	2.60115	6.26515	5.4035	12.8818	18.5235
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top