TCONS_00055780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055780
Unique NameTCONS_00055780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055780 ID=TCONS_00055780|Name=TCONS_00055780|organism=Clytia hemisphaerica|type=transcript|length=1353bp
CAGCAATATGTGGATGGGTCTTCTGGTTCACCgagCAAGGCTCAGAAGAA
ACAGAGATCTCTTTAGATCGACCCATCTTGGGAGCACTGCAAGGTCTTTG
GATGGCTTACGTAACCATGACTACCGTCGGATATGGAGATTTTGTTCCCA
CAACCATTCGTTCAAAAGCTGTGATGATATTTTGGGTGTTAATTGGACTA
GTAACTATGGGCGTCATTACGGGCGTTATATCTTCCGGACTGACCGTTGG
CGACCAAGAAGGAGCAATCAAACTCTATGGAACTCTAACGGCTACACTTC
CCGATTCGTTCGAACGTCGGCTGGCCATTCTACGGAACGCTGTTGTGGAT
GAGCGTAACCGAACAACCGTTGAAGATCTGTTCGATGCGGTGGCAAATGG
TGAAGTGGTGGTCGCCCTCTTGGATGCAACTGTTGCTGCTGGTTACGAAG
ATGTGTTGAAAGCTAAAGAGTTACGAGCGATGAAGATTATCGATACAAAT
AGTGGTTACGGGATCACACTATCCGGTGGATTGGAACCTTTAGAAGCGGA
TATCCGGAGTTATGTAGCAGCAAACAGACCCGTCATTTTGGAATACCAGA
GAAAAAATATACCAAGACTTGTGCCCACACTGGCTGATCCTGAGTTCACT
TTGATATCAGAAGAAGAGGTAGTGGCCATGATGACGTATATGGGAATTGC
TTTCGCTGTCATCTGCTTTTTTGCTTTTATCATGTCTTTGATCAGAAAGA
AGCGAGAGCGCATGGTCAAACCTGAAGAACCATTCACGAGCAGCAAATAT
TACGATGTGATGGAGACGTTTGTCAACAAATTCAACCAAGAGtacgaaga
aaaaattgaaaagatggTCGAAAGACAATTCAACGATTTCAATGATCTAC
AGGTCTTACGTCAGAACTACGGACGCCTTCTGGCACGCGCGGGATACCGT
AAGGACGTCATCGAGGACTCTTTTaataagaagaaaaagaaggacGTGCG
ATCGATCGTCCGAAAAAAACGAAATGAAAGGTTGGAAGAAATTATTAACC
GGACATCTGGAGCTGATGGTTATTTCGGTGTATGTAACGAAGCTTATGAA
CGCTGAGAAAATGATTTTCAGTGATAgctttttttaggattttgtgatat
tttttcaCGGGGATCCGTCTCTTCTCGGTGCTGgagaaatattaaaaata
agtcTCCTGTCTAAAATAACTCTAAACAGCGAGACATCTTTGAATAATAA
GTTAGCGACGCAACGATAGAgactttttacaattttttttacattttgaa
attacaaaaatttcattcaataaaatttgatCATTGATTAAAAGATGGTC
CTG
Run BLAST on NCBI

transcript from alignment at scaffold_259:57427..60288-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055780 ID=TCONS_00055780|Name=TCONS_00055780|organism=Clytia hemisphaerica|type=transcript|length=2862bp|location=Sequence derived from alignment at scaffold_259:57427..60288- (Clytia hemisphaerica)
CAGCAATATGTGGATGGGTCTTCTGGTTCACCGTATGTTCTTTACATTTA
ACTACCTTCCTATTTTTTTATTATTTCCTTACTGCATCTTTAAGCATCAA
ATGCCCATTGATAGAGTAAGGGACCTCACACGTACTCCATAAATGATCCC
AATAATTGAATGGGTACAGAGCTAAATAAATTTCAAATGTGGACTCACAG
CAGTAAAACTGTATGTCTTTGTAAATTGTCAATAAGTTTTACTCTTCACT
GATCACCTGCATTTCATTTTCACAGGAGCAAGGCTCAGAAGAAACAGAGA
TCTCTTTAGATCGACCCATCTTGGGAGCACTGCAAGGTCTTTGGATGGCT
TACGTAACCATGACTACCGTCGGGTGAGTATCTTACGAACATCTTCAACA
CTTGATGGGTAATTTTACAACTTCTAAAACATTTAACCCGATATGGAAAC
AAACTTGCTTATTATAACGAATAAACTACCTTGATCACTCTAAACATTTT
ACAAACACAGAATATTCAGATAGGCGCAATCTTTTTTCACTTAGATATGG
AGATTTTGTTCCCACAACCATTCGTTCAAAAGCTGTGATGATATTTTGGG
TGTTAATTGGACTAGTAACTATGGGCGTCATTACGGGCGTTATATCTTCC
GGACTGACCGTTGGCGACCAAGAAGGAGCAATCAAACTCTATGGAACTCT
AGTATGTGTCCTTTTCTCCAAAAGTCCACTCCAAACATTCGCTTTTCAAA
TAGTCAGTTAGAGAGATGAACCAAGCAGACCGCTTATTGAGACTTTGCAA
AAGCTCTTCCACAGATTATGTATTAGCTTAGTTTTGTTTTATCCCGTACC
CGATGTAATATCTGAATTTTCCTCATCAAAGATAGTGGATCCTTACACTC
ACTTTTGAAAAGTTTTATTGCTGTATTTTATTGCGTAATAGTTATTACAC
GGTACCGAGTACAATATGGAATATATTTTTCGAGCTCAGGTTTTTCGTCA
TATGTAGTCAAATTGTAGAAAAATCTGAACGAGAAAAATATATCCCACAT
TGTAGGAGTAAAAGTGTGATAACTGGTTTTTCGTCAACTTGAAACGTTAT
TTTTGTAACTCTTTTGAGAACCTGTTGTGTATTATGAATGAAAAAAAATA
TTTCTGAGCGTAAAAGTGTACAAAATATGATCTCTCGCTTCCCAGACCCC
TATGCTGAACGCAGTCTTGTATTTGTACGGTACAAATAATATAAAATACA
GCATTTATGTACGCATTTTCAGCCAAACAGATTGCTCATATTTTTCATGT
TGACGATAAAAATTAATAACTTTATCATTTCAGACGGCTACACTTCCCGA
TTCGTTCGAACGTCGGCTGGCCATTCTACGGAACGCTGTTGTGGATGAGC
GTAACCGAACAACCGTTGAAGATCTGTTCGATGCGGTGGCAAATGGTGAA
GTGGTGGTCGCCCTCTTGGATGCAACTGTTGCTGCTGGTTACGAAGATGT
GTTGAAAGCTAAAGAGTTACGAGCGATGAAGATTATCGATACAAATAGTG
GTTACGGGATCACACTATCCGGTGGATTGGAACCTTTAGAAGCGGATATC
CGGAGTTATGTAGCAGCAAACAGACCCGTCATTTTGGAATACCAGAGAAA
AAATATACCAAGACTTGTGGTAAGTGGACGCTATTTCATTGATTTACAGT
GTTGTCTGAAGAAAGAAAAGTCCTCATTATTTCTTGCTTGATTGCAATAA
AGATGAAAATCTTTATTGATTCAATAGAAATGCCATTGCTAAAGCACTTT
AATCATCTTTAAAGAAAATAGAAATTACGTCATGAAAGGTGGCTTTCTGC
TGCTTGCTATAAACTTTCTTAATTTGTCAAATCAGTGTCGAGTTTATGTG
GTAAATTTTACAAACTTTGTTCTTTACAGCCCACACTGGCTGATCCTGAG
TTCACTTTGATATCAGAAGAAGAGGTAGTGGCCATGATGACGTATATGGG
AATTGCTTTCGCTGTCATCTGCTTTTTTGCTTTTATCATGTCTTTGATCA
GAAAGAAGCGAGAGCGCATGGTCAAACCTGAAGGTAATTTTCATCTTTAA
TTATTTTACCAAGATTTTTCCCAAAGACAATTTGTCCGTTTTCAATGCAA
CGCCATCTCTAGAGATGTGAACGAACCAATTGAAAGTCGAAGTAAAGAGT
ACTTTTAGTTTTCTCAGAACGCACGATCAGTTTTCAGATGAAAGCAATAC
AATTAAGAAATAAATTATGAAATTGTTTTACTATAGAACCATTCACGAGC
AGCAAATATTACGATGTGATGGAGACGTTTGTCAACAAATTCAACCAAGA
GTACGAAGAAAAAATTGAAAAGATGGTCGAAAGACAATTCAACGATTTCA
ATGATCTACAGGTCTTACGTCAGAACTACGGACGCCTTCTGGCACGCGCG
GGATACCGTAAGGACGTCATCGAGGACTCTTTTAATAAGAAGAAAAAGAA
GGACGTGCGATCGATCGTCCGAAAAAAACGAAATGAAAGGTTGGAAGAAA
TTATTAACCGGACATCTGGAGCTGATGGTTATTTCGGTGTATGTAACGAA
GCTTATGAACGCTGAGAAAATGATTTTCAGTGATAGCTTTTTTTAGGATT
TTGTGATATTTTTTCACGGGGATCCGTCTCTTCTCGGTGCTGGAGAAATA
TTAAAAATAAGTCTCCTGTCTAAAATAACTCTAAACAGCGAGACATCTTT
GAATAATAAGTTAGCGACGCAACGATAGAGACTTTTTACAATTTTTTTTA
CATTTTGAAATTACAAAAATTTCATTCAATAAAATTTGATCATTGATTAA
AAGATGGTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035120XLOC_035120Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055780-exon-scaffold_259-1575043694:60257..60288TCONS_00055780-exon-scaffold_259-1575043694:60257..60288Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1575043694:59916..60013TCONS_00055780-exon-scaffold_259-1575043694:59916..60013Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1575043694:59588..59744TCONS_00055780-exon-scaffold_259-1575043694:59588..59744Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1575043694:58620..58955TCONS_00055780-exon-scaffold_259-1575043694:58620..58955Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1575043694:58206..58359TCONS_00055780-exon-scaffold_259-1575043694:58206..58359Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1575043694:57427..58002TCONS_00055780-exon-scaffold_259-1575043694:57427..58002Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1510915933:60257..60288TCONS_00055780-exon-scaffold_259-1510915933:60257..60288Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1510915933:59916..60013TCONS_00055780-exon-scaffold_259-1510915933:59916..60013Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1510915933:59588..59744TCONS_00055780-exon-scaffold_259-1510915933:59588..59744Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1510915933:58620..58955TCONS_00055780-exon-scaffold_259-1510915933:58620..58955Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1510915933:58206..58359TCONS_00055780-exon-scaffold_259-1510915933:58206..58359Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1510915933:57427..58002TCONS_00055780-exon-scaffold_259-1510915933:57427..58002Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1491911889:60257..60288TCONS_00055780-exon-scaffold_259-1491911889:60257..60288Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1491911889:59916..60013TCONS_00055780-exon-scaffold_259-1491911889:59916..60013Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1491911889:59588..59744TCONS_00055780-exon-scaffold_259-1491911889:59588..59744Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1491911889:58620..58955TCONS_00055780-exon-scaffold_259-1491911889:58620..58955Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1491911889:58206..58359TCONS_00055780-exon-scaffold_259-1491911889:58206..58359Clytia hemisphaericaexon
TCONS_00055780-exon-scaffold_259-1491911889:57427..58002TCONS_00055780-exon-scaffold_259-1491911889:57427..58002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_259supercontigscaffold_259:57427..60288 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.986334	0.55878	0.493083	0.482201	0.538305	0.527249	0.849997	0.962354	1.17406e-07	0.715118	0.307504	0.084887	1.16994	1.99901	0.531068	0.127323	0.823897	0.215498	4.93793	1.87104	0.503537	0.982209	0.255671	0.709395	0.115746	1.15231	1.43082	1.40581	0.389997	0.126684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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