TCONS_00058369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058369
Unique NameTCONS_00058369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1203

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058369 ID=TCONS_00058369|Name=TCONS_00058369|organism=Clytia hemisphaerica|type=transcript|length=1203bp
ATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGAT
GAAATGGACATTCTCCATAATAAGGCTCCGGTCACTCAACAAGATGATGA
TTTGGAGAGTGGATTTGATGATACAGCAGATCAACATAAGAGAAGTTTTC
AAAGGAAGACAGCTCCTGAATATGACAGAAATGTTGAAATGGACATTCTC
CATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTTGA
TGATACAGCAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTG
AATATGACAGAAATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTC
ACTGAAAAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAgcTTC
TATTGCACGCCCTATTAGGAAAGCCAAGATGAGAAATTCCAAAGAGTCGA
CTGACTCGGTCACAACCAGGGAACCAGGAATTCGAAAACGTGGCAAAGAA
AATACGAAGGCGAAAAAAACATCAGCCTCAAacAACAATTCAATGAAACG
CAAaagaaaagaggaaaagaaagagACTATTATGTGTACGGGATGTGGAG
AAAAGTACGACGAAAAAACTGATGATAATAGGTGGGTGCAATGTGATGCA
TGCGAACAGTGGTGTCATCTCCAGTGTTCCGGCATAAAATATCGGACGTC
AAAATATGACACTATTAATCTTGAAAATATACCGTTTAAGTGTAGAACGT
CGTGTTTAAAGTAAAGATTGAACAATAAAAAGTGTCTGTATTTTTACTCA
ACGTAACTACAGTAATCGTATTTTTATATGGTCGAGCTCTCTTTTGCGAA
TTGGGATAAATGTTTTACGAAGACAATAACAATGGAAATAGGTCTTGAAT
TCCCAAGtcaattgaatgaaaacaaaaacaaaatttgtcaAAGTCTTTCT
TGAAGGGAAATCCGGACTTTTTTGCACGTCCTATGTAATAGGCTAATCGC
AATAAACAATTTAACCCCCATGTTGAGGAAGTCACTTTTGGAAAATATTC
ATCCATAGTCCTTATAAAAACCCTGGTCCGgaagcttatttttcaaatat
tttgttagctttttcctttgttgccatcaaaagataaaaatcaatttgct
cAATTTTGGATCACGTTACCGagtactcctcttgggattggtttgagcaa
aac
Run BLAST on NCBI

transcript from alignment at scaffold_31:117..3520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058369 ID=TCONS_00058369|Name=TCONS_00058369|organism=Clytia hemisphaerica|type=transcript|length=3404bp|location=Sequence derived from alignment at scaffold_31:117..3520+ (Clytia hemisphaerica)
ATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGAT
GAAATGGACATTCTCCATAATAAGGCTGCGGTCACTCAACAAGATGATGA
TTTGGAGAGTGGATTTGATGATACAGCAGGTGagaaaatctttacaaata
gaaattATCGTTATTTTTCTACGGTTCtctttttctattgttatttttcG
AAGTTTATtgattatattatttttatctACTTAGATCAACATAAAAGAAG
TTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGACA
TTCTCCATAAAAAGGCTCCGGTCACTGAAAAAGATGATGATTTGGAGAGT
GGATTTGATGATACAGCAGGTGagaaaatctttacaaatagaaattATCG
TTATTTTTCTACGGTTCTCTTTTTccattgttatttttcattcacTTTGA
AGTTTATtgattatattatttttatctACTTAGATCAACATAAAAGAAGT
TTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGACAT
TCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTGGAT
TTGATGATACAGCAGGTgagaaaatcttttacaaataGAAATTATCGTTA
TTTTTCTACGGTTCTCTTTTTccattgttatttttcattcacTTTGAAGT
TTATTGATTATATTATTCTTATCTACTTAGATCAACATAAGAGAAGTTTT
CAAAGGAAGACAGCTCCTGAATATGACAGAAATGTTGAAATGGACATTCT
CCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTTG
ATGATACAGCAGGTgagaaaatcttttacaaataGAAATTATCGTTATTT
TTCTACGGTTCTCTTTTTccattgttatttttcattcacTTTGAAGTTTA
TtgattatattatttttatctACTTAGATCAACATAAAAGAAGTTTTCAA
AGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGACATTCTCCA
TAAAAAGGCTCCGGTCACTGAAAAAGATGATGATTTGGAGAGTGGATTTG
ATGATACAGCAggtgagaaaaatttgaaaacaacaatTCTCCCGAGTAAC
AAACGTGTTGACTATAAATGGATAAACTTGAATTTcttgggtcatttatt
aaatttggttcattggatcaaaagttatcctaatttgaaaaaaaagttac
ttCAGGAAAGTactcaaaaacgttgaaaatcgacctatcaaatttttatt
ctgaaattttcagtagcgACAGCTTTTGCACGAATAAGAGCATTACGTAG
TAATTtagaaacataatttttttcaaacttgagcctagaaagggtttaaa
atcttcatcaaaatcatttccaTTTGTAAAAGGATTAAACTTTTTAGATC
TCTTTTTAGAATATTCACctgaaagagagaaacttttttgtggcgcacca
gGTATATAATATCACTATATTGAAAAcgatttcattttctttcagcTTCT
ATTGCACGCCCTATTAGGAAAGCCAAGATGAGAAATTCCAAAGAGTCGAC
TGACTCGGTCACAACCAGTAAGCTTTTTTTTCATCCTATCAGATTCATGT
CCCGTTTCAAgctatttttcttttcgcatctTGAACTTTCAAAATGTTGT
CAATTATGAATACTAACTATCAGAATTTTCCTTTGAATGTAACAAAATGA
ATCCTTATTATTGTTattcttgtttttattattattgtatTCAAAGATTC
TATTGTATTACTTATCTTCGTTAGCCGAATTGAGAAACCAGCCCATAGCA
AACCCAAACCTCTGATAAGTTTTACATCTCTTTCAGGGGAACCAGGAATT
CGAAAACGTGGCAAAGAAAATACGAAGGCGAAAAAAACATCAGCCTCAAG
TATGGTTATTTTCCCGTTATAAATGTCCAGGGCCTAAAGTTACTCTTGAA
ATTGCCTTTTTGATTAACATAATTTTATATCTTAAACTACAGGTacatga
aattttattttcaaaactttttagatATAATCCCTATTTCTTTTCCAATT
GAGTTTGCCTCTCATTTTGTATGCCATTTTGAGTGGTACAATATCGAATC
TTTTGTATATATGACAGTCAAATCTAGTATGGGAGTATTCCTCTGGCTCT
GGGTCATTTATTATCACAATTGtaattctcttttattttagacAACAATT
CAATGAAACGCAAaagaaaagaggaaaagaaagagACTATTATGTGTACG
GGATGTGGAGAAAAGTACGACGAAAAAACTGATGATAATAGGTATGAAGA
GTCGTTATGTTCGATTTTTTAGATCAAAAGCACTTCCTTTTTAAAGATTA
TACAAGGAAGACCTTTCTTGGAATTAAAGCATACCGTTTTCTTGTGAAAA
TTTAGAAAGAAGATATTATAGAGAATGACTGGTAGCAGTAGTTTAACCTA
CTTTAAACACCATCAGTTTTTGCTTCTCAATCTCAATTACTctaataatt
taattttgaattttgcaaaaaattttcaCCCAATACATTTTTATTCCGAA
cccctgcttgttaatttttggaaaattttatttgaaagttatTTTCCTTG
CCCTAGTTATTCTGTATTAACCTGCTTTTCTAAAATTCTCTCTGTAATAC
CTACTCCTGCGAAAGGAGAGGGGATCCAGAGGCTTCATATATAATATCTA
TATCTAGTATCCACTGGTATTCGAAGATATTTCGAATGTCTGTTTTTCAT
GTTTGTTCGATGTCTTATCATATTTATTATAGGTGGGTGCAATGTGATGC
ATGCGAACAGTGGTGTCATCTCCAGTGTTCCGGCATAAAATATCGGACGT
CAAAATATGACACTATTAATCTTGAAAATATACCGTTTAAGTGTAGAACG
TCGTGTTTAAAGTAAAGATTGAACAATAAAAAGTGTCTGTATTTTTACTC
AACGTAACTACAGTAATCGTATTTTTATATGGTCGAGCTCTCTTTTGCGA
ATTGGGATAAATGTTTTACGAAGACAATAACAATGGAAATAGGTCTTGAA
TTCCCAAGtcaattgaatgaaaacaaaaacaaaatttgtcaAAGTCTTTC
TTGAAGGGAAATCCGGACTTTTTTGCACGTCCTATGTAATAGGCTAATCG
CAATAAACAATTTAACCCCCATGTTGAGGAAGTCACTTTTGGAAAATATT
CATCCATAGTCCTTATAAAAACCCTGGTCCGgaagcttatttttcaaata
ttttgttagctttttcctttgttgccatcaaaagataaaaatcaatttgc
tcAATTTTGGATCACGTTACCGagtactcctcttgggattggtttgagca
aaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036772XLOC_036772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058369-exon-scaffold_31-1491911889:117..190TCONS_00058369-exon-scaffold_31-1491911889:117..190Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1510915933:117..190TCONS_00058369-exon-scaffold_31-1510915933:117..190Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1575043694:117..190TCONS_00058369-exon-scaffold_31-1575043694:117..190Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1491911889:677..731TCONS_00058369-exon-scaffold_31-1491911889:677..731Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1510915933:677..731TCONS_00058369-exon-scaffold_31-1510915933:677..731Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1575043694:677..731TCONS_00058369-exon-scaffold_31-1575043694:677..731Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1491911889:847..978TCONS_00058369-exon-scaffold_31-1491911889:847..978Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1510915933:847..978TCONS_00058369-exon-scaffold_31-1510915933:847..978Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1575043694:847..978TCONS_00058369-exon-scaffold_31-1575043694:847..978Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1491911889:1094..1228TCONS_00058369-exon-scaffold_31-1491911889:1094..1228Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1510915933:1094..1228TCONS_00058369-exon-scaffold_31-1510915933:1094..1228Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1575043694:1094..1228TCONS_00058369-exon-scaffold_31-1575043694:1094..1228Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1491911889:1662..1733TCONS_00058369-exon-scaffold_31-1491911889:1662..1733Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1510915933:1662..1733TCONS_00058369-exon-scaffold_31-1510915933:1662..1733Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1575043694:1662..1733TCONS_00058369-exon-scaffold_31-1575043694:1662..1733Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1491911889:2003..2065TCONS_00058369-exon-scaffold_31-1491911889:2003..2065Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1510915933:2003..2065TCONS_00058369-exon-scaffold_31-1510915933:2003..2065Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1575043694:2003..2065TCONS_00058369-exon-scaffold_31-1575043694:2003..2065Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1491911889:2358..2457TCONS_00058369-exon-scaffold_31-1491911889:2358..2457Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1510915933:2358..2457TCONS_00058369-exon-scaffold_31-1510915933:2358..2457Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1575043694:2358..2457TCONS_00058369-exon-scaffold_31-1575043694:2358..2457Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1491911889:2949..3520TCONS_00058369-exon-scaffold_31-1491911889:2949..3520Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1510915933:2949..3520TCONS_00058369-exon-scaffold_31-1510915933:2949..3520Clytia hemisphaericaexon
TCONS_00058369-exon-scaffold_31-1575043694:2949..3520TCONS_00058369-exon-scaffold_31-1575043694:2949..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:117..3520 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04031	1.62511	0.534496	0.147744	4.50777	3.30918	4.29482	4.77485	1.62873	1.88616	1.18855	2.28151	1.55405	3.48948	3.79792	4.49461	3.70588	3.82133	3.13282	3.02878	4.89674	4.68598	2.79566	1.76538	4.01967	2.96202	1.93917	1.23373	1.19939	0.675449
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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