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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055806 ID=TCONS_00055806|Name=TCONS_00055806|organism=Clytia hemisphaerica|type=transcript|length=989bp
TTTCGAAGTAAAGATACTTTGGAAATACATATTCAAGCATGTaaggatca
tgatttttgttatGTAAAGATGCCTGAGGAaggtaaaaacattttaagat
atCAAGAAGGTTCTAAATCGATTAGAGTACCATTTGTGATTTATGCTGAT
ACTGAATGTATACTTCAACCAATTCAAGGTGTACAAGATAGGGAAAATCA
ACCATCAACTCGCAATGTTACAGAGCATGTAGGTTGTGGTGCAGCTATGT
TAGTTAAATTTGCGCATGGTGAATATGAAAGGGCGTTTGAACAGTGTAGG
GGAGAAGATGTAATCATGACGttttgtaaaactttaaaaCGGCAAGTTGA
GAGAGTGTTGAGATATAAACAGCGTAAAATGGAGCCTTTAACAGATGAAG
AAAAGGAACAATATAGAGATGCAAGAATGTGTCATCTTTGTAGAAAGGGT
TTTCAAGTATCACAAAATATTAGAGATCGTAAGGTGCGTAATCATTGTCA
CTATACTGGGAAATATCTTGGTCCAAGTCATAGTAGTTGTAATTTAGCTT
ATCGAATACCGAAACACGTGCCAGTAGTGTTTCACAATTTGAGCAACTAT
GATGCACATATTATTATTCGGGAATTAGCTAAACAGTTTGATGTTGATGA
AATGGAAGTTCTTGCAGAGAATACAGAGAAGTATATCAGTTTTTCGGTTC
CAATTTATGTTGATATTAGAGATAAGGATGGAAATATTGTAATGTATGAA
GATAAAAATGGGAAAATGaggaagaaaacaaagaaatgtatgTTGAGATT
TATTGATAGTTGTCGATTTATGAAGGCTTCTTTAAGTAGTTTGGTGGATA
ATCTTGTTGGTACAAATACGGATGGTATCAAGTGTTGTGAAGAAAAAGAT
GTAGAGCTTGTGGAAATAGATAGCAATTATATCGCAAGATTTGAGTGTGA
AGAATGTAAAAGCATTAAGACAAGACAATTAAATCGGGA Run BLAST on NCBI protein sequence of TCONS_00055806-protein >TCONS_00055806-protein ID=TCONS_00055806-protein|Name=TCONS_00055806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
FRSKDTLEIHIQACKDHDFCYVKMPEEGKNILRYQEGSKSIRVPFVIYAD
TECILQPIQGVQDRENQPSTRNVTEHVGCGAAMLVKFAHGEYERAFEQCR
GEDVIMTFCKTLKRQVERVLRYKQRKMEPLTDEEKEQYRDARMCHLCRKG
FQVSQNIRDRKVRNHCHYTGKYLGPSHSSCNLAYRIPKHVPVVFHNLSNY
DAHIIIRELAKQFDVDEMEVLAENTEKYISFSVPIYVDIRDKDGNIVMYE
DKNGKMRKKTKKCMLRFIDSCRFMKASLSSLVDNLVGTNTDGIKCCEEKD
VELVEIDSNYIARFECEECKSIKTRQLNR Run BLAST on NCBI transcript from alignment at scaffold_26:22800..23788 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055806 ID=TCONS_00055806|Name=TCONS_00055806|organism=Clytia hemisphaerica|type=transcript|length=989bp|location=Sequence derived from alignment at scaffold_26:22800..23788 (Clytia hemisphaerica)
TCCCGATTTAATTGTCTTGTCTTAATGCTTTTACATTCTTCACACTCAAA
TCTTGCGATATAATTGCTATCTATTTCCACAAGCTCTACATCTTTTTCTT
CACAACACTTGATACCATCCGTATTTGTACCAACAAGATTATCCACCAAA
CTACTTAAAGAAGCCTTCATAAATCGACAACTATCAATAAATCTCAAcat
acatttctttgttttcttcctCATTTTCCCATTTTTATCTTCATACATTA
CAATATTTCCATCCTTATCTCTAATATCAACATAAATTGGAACCGAAAAA
CTGATATACTTCTCTGTATTCTCTGCAAGAACTTCCATTTCATCAACATC
AAACTGTTTAGCTAATTCCCGAATAATAATATGTGCATCATAGTTGCTCA
AATTGTGAAACACTACTGGCACGTGTTTCGGTATTCGATAAGCTAAATTA
CAACTACTATGACTTGGACCAAGATATTTCCCAGTATAGTGACAATGATT
ACGCACCTTACGATCTCTAATATTTTGTGATACTTGAAAACCCTTTCTAC
AAAGATGACACATTCTTGCATCTCTATATTGTTCCTTTTCTTCATCTGTT
AAAGGCTCCATTTTACGCTGTTTATATCTCAACACTCTCTCAACTTGCCG
ttttaaagttttacaaaaCGTCATGATTACATCTTCTCCCCTACACTGTT
CAAACGCCCTTTCATATTCACCATGCGCAAATTTAACTAACATAGCTGCA
CCACAACCTACATGCTCTGTAACATTGCGAGTTGATGGTTGATTTTCCCT
ATCTTGTACACCTTGAATTGGTTGAAGTATACATTCAGTATCAGCATAAA
TCACAAATGGTACTCTAATCGATTTAGAACCTTCTTGatatcttaaaatg
tttttacctTCCTCAGGCATCTTTACataacaaaaatcatgatccttACA
TGCTTGAATATGTATTTCCAAAGTATCTTTACTTCGAAA Coding sequence (CDS) from alignment at scaffold_26:22800..23788 >TCONS_00055806 ID=TCONS_00055806|Name=TCONS_00055806|organism=Clytia hemisphaerica|type=CDS|length=987bp|location=Sequence derived from alignment at scaffold_26:22800..23788 (Clytia hemisphaerica)
CCGATTTAATTGTCTTGTCTTAATGCTTTTACATTCTTCACACTCAAATC
TTGCGATATAATTGCTATCTATTTCCACAAGCTCTACATCTTTTTCTTCA
CAACACTTGATACCATCCGTATTTGTACCAACAAGATTATCCACCAAACT
ACTTAAAGAAGCCTTCATAAATCGACAACTATCAATAAATCTCAAcatac
atttctttgttttcttcctCATTTTCCCATTTTTATCTTCATACATTACA
ATATTTCCATCCTTATCTCTAATATCAACATAAATTGGAACCGAAAAACT
GATATACTTCTCTGTATTCTCTGCAAGAACTTCCATTTCATCAACATCAA
ACTGTTTAGCTAATTCCCGAATAATAATATGTGCATCATAGTTGCTCAAA
TTGTGAAACACTACTGGCACGTGTTTCGGTATTCGATAAGCTAAATTACA
ACTACTATGACTTGGACCAAGATATTTCCCAGTATAGTGACAATGATTAC
GCACCTTACGATCTCTAATATTTTGTGATACTTGAAAACCCTTTCTACAA
AGATGACACATTCTTGCATCTCTATATTGTTCCTTTTCTTCATCTGTTAA
AGGCTCCATTTTACGCTGTTTATATCTCAACACTCTCTCAACTTGCCGtt
ttaaagttttacaaaaCGTCATGATTACATCTTCTCCCCTACACTGTTCA
AACGCCCTTTCATATTCACCATGCGCAAATTTAACTAACATAGCTGCACC
ACAACCTACATGCTCTGTAACATTGCGAGTTGATGGTTGATTTTCCCTAT
CTTGTACACCTTGAATTGGTTGAAGTATACATTCAGTATCAGCATAAATC
ACAAATGGTACTCTAATCGATTTAGAACCTTCTTGatatcttaaaatgtt
tttacctTCCTCAGGCATCTTTACataacaaaaatcatgatccttACATG
CTTGAATATGTATTTCCAAAGTATCTTTACTTCGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055806-exon-scaffold_26-1491911889:22800..23788 | TCONS_00055806-exon-scaffold_26-1491911889:22800..23788 | Clytia hemisphaerica | exon |
| TCONS_00055806-exon-scaffold_26-1510915933:22800..23788 | TCONS_00055806-exon-scaffold_26-1510915933:22800..23788 | Clytia hemisphaerica | exon |
| TCONS_00055806-exon-scaffold_26-1575043694:22800..23788 | TCONS_00055806-exon-scaffold_26-1575043694:22800..23788 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_26 | supercontig | scaffold_26:22800..23788 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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