TCONS_00055796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055796
Unique NameTCONS_00055796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055796 ID=TCONS_00055796|Name=TCONS_00055796|organism=Clytia hemisphaerica|type=transcript|length=2610bp
ccCAGATAATCTAAATGATATACGAAAGCTGGAAAGAATTTTAGTGGctc
aaagaattttattttcaaaagtcatgATAATGCGTAAAGGAGAATTCCCT
AAATTACAAGGTGCAATATGCAATGTTCCCATTGAAACACCAGGTATATG
TAAAGTACTTCCTAGAGGAAGTGACAGTAGTGGTGTAATAAATgttgaat
taaaaagaaagatatccTACAAAAACCCTGTTATTTCGCAGCAAGTAAGA
CGGCAAAaggtttttgaaactttggacTTTTTAGTGAACAATAATCCTTT
GTATCATGATATAAATATTGATATGTCAATTATTGACCAAGTAANgcccc
cccccccccccgggtttcaTGCAAATCAACTGATCAAATGATTTGGAAGG
ATCAAATTTGTGATGGAAAACAAGATTGTTTGaacaatgaagatgaagaa
aactGTCGCAAGGAATATTGTCGATATAATGTTGATCGCAACCATCTGTT
ATGGAGGTCTGTTGGAAGAGGGAAAACGTCAGTAATTCAATGTAATCAAG
TTCCAGTTTTAGTGAAGAATTTCACTGAATATGGCTTAAAAGGAACAATA
TCAAGAACATGTGACGACACAAGTCAACCACGATGGATTAAAACAGATTG
TCAATGTGTTATCGACGGTTTCCCAAAGTTTCAAACAAATCTATCTattC
ATAATGTAACTTACAAATCAATCAACAACGACATCGTGCGACTTTACAGA
CATTTCAACATATCTCCGAGCAGTATTCCACATGTTTTGAGTTCCTTAAC
ATCATTCTCCAAAAACTCAAATTTGGCAACAGCTCTGAAGGAAGCTTCGT
TTACCAAACTACTGAATGGCACAAGAAGAATTATCATATATTAGACAATA
CTGTGAGGaATGTTGCAAAGATTATGACTACACCTCGGTATTGTcaagat
tttcgaaaagaaataGATAGGATGTTTATGGGTCTACTAAATCAATTTAG
TCTTGACAATTATGGGTATGGTGGAACTTCTGTTTCTTTGGTTCGAGCTC
TTGGTGCAAATGAGCTTCTCACAATGAAAATGattgaaatgaaaaatgaa
aatttctactATCGACGGATTGGAAAAACGAATAAGGTTGATTTAACATC
CATATAACCTCAGTATCATTGTCACCATCCTCATCTTTGAAAGCACGTGA
CAGCTACCATCTTGGAATCATTTTGCTTTTACTCTATTTGAATGTGTTAA
CAAAGAGTTGATTTTTATTTCACATATAGACAATTTCGTCAACGTAGCTT
TCCGGTGAATTGATTATAAGACAAAAAGCTTCGTAAAATCTGGCACTGCG
GTGTTTATCGAAAGCAATAGACGGATGGCATACGCAGTTGTCGTAACAAA
CCACCCAATGGTCAAGATTGTCAAttgtaatatttgctcttcatctttga
ttctttctacagtgaatATATTGATTTatacatgcgcgataaaatatCTT
TAGAGGTTTCGTTAGAGGTTGAtacattctttgaaaacttggcccTGATA
CTCAGAGTAGATTTTCACATTATAATACGAAAACTGAATATGGAATAGTA
TTCACCTTGTATTTGTACAGAGTAAAATTTGCAGCTCAATTTGTTTGAAT
ATTTTGGAATAATTTGAACCTTATCGTTACCACCTTGGTTTCAATGACTG
ATAAAAGATATAACACCGGTACACGAAGTTAATATACTGCCTTATTATGG
TTTTCGATGCTGATTCAGTTAGAGATTTAGGAAAACACATTTCACGCTGA
TGGTCAGCTATGTAGAACTTCTGAGCGAAGGCCAAAACTAAATAGCGTTT
CTCTCGGcgctctcgggtacctaatagccgggagtttggaataagcgggg
ggtttgaaaaaatctcaaaacttaataaggggggggggtttggaataaaa
atgtcctgcgtggaaaattttcgaaaaggaggctaatacagcagaattag
ggcaaaagagggatctttcaaaaacattttccaaaaatcaataagcgggt
tggaataagaatattGTCAGGCAGCCATATTTCATTTTGGCTCACCTTCG
GTATGGCTAGCATGCTGAAGGATATTTGATAAGGAGCCTGCAACTTTCAA
TAGATATAGAATTAATATATGATTATGGAGTAAAGACATAAAGGTAATGC
ATACCAAAAAAGTAACTTCAAATTAGTCTCGATCAATTCTTATCCCCGGA
ACAGTAATGTCAACCCTCGGCTGACAAatatcctgggtggaaaatttttg
aaaaattaattagcgggccccccggctattaggtacccgagattACCGAG
CGCGGTACCGGGAGTACGTACATGATCACCAAAGTTCAAGGAAAGTTTAC
TTTACTTTTCATATCAGACATTTATTTCATATCTTATCAGGCCAGTGTCT
GCCTACTGAtacattatgctgatataaacaaaaaaatattttttcttttg
agttAGTCAAAAACCTGGCCTACCTCTGTGGCCCGATCATATGGTTAACC
TACCCTATGACCTACCTTATGGCCcaccaaaaaatcaatttagaCAACCT
TAGACCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00055796-protein

>TCONS_00055796-protein ID=TCONS_00055796-protein|Name=TCONS_00055796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MIWKDQICDGKQDCLNNEDEENCRKEYCRYNVDRNHLLWRSVGRGKTSVI
QCNQVPVLVKNFTEYGLKGTISRTCDDTSQPRWIKTDCQCVIDGFPKFQT
NLSIHNVTYKSINNDIVRLYRHFNISPSSIPHVLSSLTSFSKNSNLATAL
KEASFTKLLNGTRRIIIY
Run BLAST on NCBI

transcript from alignment at scaffold_26:148347..169194+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055796 ID=TCONS_00055796|Name=TCONS_00055796|organism=Clytia hemisphaerica|type=transcript|length=20848bp|location=Sequence derived from alignment at scaffold_26:148347..169194+ (Clytia hemisphaerica)
ccCAGATAATCTAAATGATATACGAAAGCTGGAAAGAATTTTAGTGGctc
aaagaattttattttcaaaagtcatgATAATGCGTAAAGGAGAATTCCCT
AAATTACAAGGTGCAATATGCAATGTTCCCATTGAAACACCAGGTATATG
TAAAGTACTTCCTAGAGGAAGTGACAGTAGTGGTGTAATAAATgttgaat
taaaaagaaagatatccTACAAAAACCCTGTTATTTCGCAGCAAGTAAGA
CGGCAAAaggtttttgaaactttggacTTTTTAGTGAACAATAATCCTTT
GTATCATGATATAAATATTGATATGTCAATTATTGACCAAGTAANgcccc
cccccccccccgggtttcaTGCAAATCAACTGATCAAATGATTTGGAAGG
ATCAAATTTGTGATGGAAAACAAGATTGTTTGaacaatgaagatgaagaa
aactGTCGCAAGGGTATGCATTTatgttttgaatgattttttataagtaa
cccaaagattttcttttaaagttttaaaagatTGAGGAAAATCCCAACCA
GTTGAGTGCAGCTAGGGAGAATCGGCGAATGAAAGATGTGTGACGATTCG
TTATCGTTCGTTTAgattttcaggctttaaaaagtgcactgtaaaaTAAT
CCACACAAGAAAATTCACTCTTGGGGTTAAAAACTTTGAGTAAAGATCTT
AGTTAGATTATTATTGAGGAGTTTTGGATTTTCGGGTCACTTGATTTTTG
TCCAATGTTCTATGCACTATAATGTGAGGACCCAATGTTTGCCTTTAAAA
TAAAGTGGAGGCTCTTTAAATTGAGCCTCTTTAACTCAAATAGGTTTTCT
AGGCCCTTTTGTTAACGATACGCCCCTTTGTCACAGACTCCGTGAAGGAC
CCGCACCCAGTGGGAAACTGACTTTGCTTTCCTcctcatttgaaatttta
atggaAAAACATTACAATCCAAAACCATCGCCGATGGTTTATTTTGACCt
gggaacaatataatttttatcaccattgggatttcgatagaaattttcat
ccccactgtgggGATCCATGAGTCTGATGAGTTCCACTGGAGCtttgaga
aaggggtgtaaaatgtCTTATAAATCTTACTGCATAGTtctaaatttcct
taactcgaacaaattgtGTTCTTTGTGCGTGTTCGAgctatggagactcc
actgtatagtAATCAAACAATGAACAATTTCCAGACTGAGTGAGTGCTAT
CATTTCCACCGATTTCCTTTCAGAATATTGTCGATATAATGTTGATCGCA
ACCATCTGTTATGGAGGTCTGTTGGAAGAGGGAAAACGTCAGTAATTCAA
TGTAATCAAGTTCCAGTTTTAGTGAAGAATTTCACTGAATATGGCTTAAA
AGGTATATGTTGTCAATCttgtacccagagccacttgcaccacTTTATAC
TGATTTTACTGATGCACGTGATATAATCGTAAGTGCTATTGGAATCTTAA
CAAAGCGAGCTaggggactgggttcgagtttggcATGTTGTATTTATGGT
TAGTGTCAATGGAATTTATTTAGTCATTACCATCGATAATCTCTCTACTT
GAATTGCTTTATTTATATACTTGACTCGTTTATTATCTTGTAATGTGGGT
GGGTATGATAATAGCCAATTGCTAGGGGATAATATCAGCTGATGTGAATT
AATTTTTGGATTCGAAATAGTATCGTGTCCTACAAAAGGTCTATGCTCTT
CCCTTTGTGAACACTACGACACTCGAAATTCAATCTAGCACAGCACTCCA
GCATATATTTATCAGAAGGTTGAACGATGTGCAAATGTGAAGCTCTGCAT
CTAAAAAAATCGCTCAAAGCCTGGAGGATACAGGCTATTTGATGattgat
caaaatttaaataattCTTTCTTTTGCGATTTCTTCGAAGGAACAATATC
AAGAACATGTGACGACACAAGTCAACCACGATGGATTAAAACAGATTGTC
AATGTGTTATCGACGGTTTCCCAAAGTTTCAAACAAATCTATCTGTAAGA
ATTATTACCATTGTGATAAATTATCCAAGGTAGGAgcaattttgttttat
ttggctttatcattattttttgatatttgcgTACTCTTATCTGGTCTGAG
AACGTACagagttttcttctttttcagattCATAATGTAACTTACAAATC
AATCAACAACGACATCGTGCGACTTTACAGACATTTCAACATATCTCCGA
GCAGTATTCCACATGTTTTGAGTTCCTTAACATCATTCTCCAAAAACTCA
AATTTGGCAACAGCTCTGAAGGAAGCTTCGTTTACCAAACTACTGAATGG
CACAAGAAGAATTATCATATATTAGACAATACTGTGAGGGTATGGTATCT
AATATGTTTAAATAGATAAAATAGCAATCCTCAGTCGAGTCCATTAGAAT
GTGCAATTTCAAATTTCTAGCCTTTATATAAATCAATacttcaaattgat
tttattcGCCTTACCATGACGTTGGTATCGTTTTGaccatttcaaatttt
aaaaattttcttcagaATGTTGCAAAGATTATGACTACACCTCGGTATTG
TcaagattttcgaaaagaaataGATAGGATGTTTATGGGTCTACTAAATC
AATTTAGTCTGTAagtatgatttattttttaaatattgttaCCTTGAATT
ACCTGCAGAGCATTTACAACTTCACCCTAAGGCCTGATTTTGCAGAAGAA
ATAGACAAAACTCTTATGGAGAACTTGATTTTGATGGAAGCCATTTTACA
ATAGTAAAATGTAGATGAAGAAACTATCTCGAGCTGCTTTTTGCAAGAAG
TAATCTAAATTTAGCGACCGTTTTGTTAGAAATTTCGATAAAATTCGTTT
AAATAAGTTCTCgcaaaaattcagtttttttgtagtaatcgtcagccgtg
caaaattactcgaatctgattggtttagaggaatgcgattaatcgttaat
tgcacttttaccactttttgcactcttcggcggggggacacttttgtccc
cttattcttttctctcccaagtcctgtgNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGACTGGATTATGTCAAATTA
GGCGTTAATTAGTCGTTCCAAGTATTTAATGCATATCATATTTTTAATAC
TAAGTATGTTTTCATTACCCATTTAGCCAGTAGCGGAAATGTTCAGAACA
CAAGTTATGTGCCATGCAGGCGAAGAATATTGGAAGCCAGCTGTTTCTGT
TTTCGTCTTACTTGGGAAAGAATTTGACTTGTAAGTTTTTGCTTTGTTAA
CCAATAGTTCCTTGCCTTTGATTCGTCCCTTGCCTTtaatcgttcgttcg
ttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgtt
cgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
ttcgttcgttcgttcgttcgtttgttcgttcgttcgttcgttcgaaaCAA
TAAAACCTGATTTCCATTGACTTCTTTTTCAGACCAGATTACGGCTTTGG
TGACTCTGGCTCATCGCTCTTGGAGCAACTTATTATACACCACAAGCTCG
ATTTGTAAGTcgaaacaataaaacaaagtaATCTTTCGTAGGTCAAATTT
GGTACAGGATGCCTTGCATGCTGGATATATCTGTCTCTAAGTTTGGAGCA
CAAAACCAGCTTATAGCTGGTTACAAGACACATTTAAAAGAAGAACTAAA
ATGCAAAAGTAATTGCATACGTAAGATCCAATCCCattaaatctttttct
tcttccctCAGGTTGTTATGATGGAGGATGAAAGACTGCAAGAGAACAAA
CATAAACGGTCTCCACCTAAGATTAATGAAACACATCAAGTCCATCCCTC
TTCTTCAGCTGATAGTAGATCTTCACCAAAAGTAAATAATTTTCATGTCG
GTGTTATGTCAAATACATCTTTTAGCTTGCAGTCAATTTAGCTTATAAAA
TTGTCTcttttatgttattttttacTACATGGGAGCCACTCTCAAGGAAA
TTAGCCTATAGGTTTCCATATGGATGTAAAAAAGAGTGAACACTGCTGTC
GATTTTGTGGAGACGGTTTAAAagtttaagagccattttctgtaaaaatc
agacAAAATCAGGCAGGTTGAGGAAGTGATATCCTCAGATTTTGCCAATG
TTTGgatattttgctcaaatacttgaaaataacatcctgtgaaaaatttt
ttgaaaaatcttttttcgttccTAAAATATGGGCCTTcaaaatttgggcc
aatttgcccaaaaaagtgcacttttgataaatctttgactTCAAGAGCAA
TTTTAGATATGATCAAGCTTAAGAtttatttcaaaacattatTCCTGGAA
GAAATCCATGGGTAcattgaaaaaatggcattttgagaaaaattttttga
ccctatggctagaaatcattgcctgaaatcacaacatttctaattttgaa
tagattttgaGAGCAATTAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATCGATTTTGTCGTA
CTTTTTCACTTTGTCAACATTTTCATGGATGATGGTTGAAGGAATCAATA
TCATCAtcattgttgtttttgttttcaaaggaAATCGAAATTACCACAAA
CAATTTCTAGCCATCGGCTATGGTAGGTATAGCCTGaatatcaaaactaa
aaatttcagaaaatttaaattttaactcaacaaacaaatttttgaaatca
caGCTTAGTCTTAgtcctagagaatgaaagtatGAATCCTATGTTTCCAA
AACACTCCATAACCACATAGCGCAGTCAAACCCAAAACCCACCAACCAAT
ATCCAAAAAATTACAACAGTCCATAAGAAAGTTTTCATGAACCATGTTTC
TATGGAAAATAAATTCCCctgatttcttctttttttgttttcatgtgatt
aggaaattatattttcattaGTAAGTAGAGGGTCCAAGGTTACCCTTTGT
TTTGTTACATAATTTAGCCGCGTCATAGAGGCATCCTTACGGGTTTAACG
GGGTTTGTGCAAGTAAGCGAACTGCATTTTGATTTAGAAGTCAAATTACT
TTAGGAAGACCAGGCGGTAAACCAGAAACATGAAATAACTGTGAAAACTA
GACAGTGAAATAATTTACCGTTTGGATATCAAGGCTATGGTATTTAGTGT
AACTGAACtgagacttttttgtttctttttgtgAGAAATGCATTATGCAT
TGTTGCTGGGATCAATAATTCCAATGATAAAACATGCTCTATTACTTTTC
TCTGAGATCCTCTACGCAAgggaaaaaagaataaaaaaaccGTGACTTTT
GAAATGTTTCAATAGGTTACactatcaaaaactagactgtaaAATAAGTT
AGGTAATTGTAAAGCTATGGTATGCAGTTTAAAAGAACTGAGACTTGTTT
CGATaggttacactttttctcacaTTGAAGAAAAGCAAGGAAAGTCATGG
TGAATTAGTTGTTTAATagtttttatgtttcatcttttttttcttaGGTT
TACCCTTTCTATTGACATCGATCTTCGGAGGAGTTTTCAACCAATCTTTT
GCCGATGCTATTGAGTAAGAAATTTTTATatcaaagaatatttttttcaa
tacgCACAAATTAAgctcattttttttcaatacacTTTAAAGTATAGAAC
ATATTTGCGAAGATCTTAATAAAAAATCTGCCTCAAAACTTCAAAACTAC
TAAGTACTACATTTTAAAACAGACTTGGTTGGAATGATCATTTCGAGTGG
ATGAATTTAAACTCTCACTTGAAAGTCAGTAAActtgaaattgaataaaa
aataagtGAGAATCTTCTATACGCGAATTCAAGTAGGTAATAGAATAGGT
AGTAGGTAATAGGATGCACcaaatttttctgattcttGATGTACATCTTA
GCTTCAgttattttattttgtgactTCTAGGTGTGTCGTTTTACAAAGAA
ACTATTTCTGGGTGTTGAGAGGACCAATATGTTTTTATCTGCTGGTGAGT
TCACTGCATGCAAAAGTACACGTTTTCTCTCAATACTGGTTTCTATAGAA
GAATCTACGTCTATACCACTGACCAAACCTCGTTCCCTGcatattatcag
cttttttatgcttactgatatcaatagataatattctctggtgTCAATCA
cctcagtaacgtaaataaagcctgggattcACTGAGACTGACCTTTATAC
TATGGATAAAGCTTCTCGATTCCAgtcaagaaaaaaatctttgatttcGA
AACAGAGGTGTATCACCACTCAATGTTGGTTTTTAAACGGagaatttcat
tgatttataaCTGACCCACATTGATCAAAAATGACgtatatagcttggtc
cagggtatataaaggtcagttgTCTATACCCATTaattatttccatattt
ttcatgaaaggAGAGTTCTGCTTTCTAGTAAGCGGCTTGTTTCCTTTAGA
GCAAATATAGCACAATATGATATCTTATCTTATTGTTTTTGTGACCTTTT
TTCGTAtgcattgtttttataaatgtACTTTTGAATTTCTTTAGGTTAAT
GGTATCTtatattttgatgaaacttCGTCAAGTTGCTAAAGAACGTAAAA
ACATGAATGTCAACACGAAGTCAAGGTAGCCAGTGTTGCGATTTGTGTCC
TGGTGGTGGTGGCCCCCAGCTAAATCAATATGGCGCCAGAAACAAAAATC
CCGTAATAATTTTGCAAAACCCAGCTTAGGAAGCGCTCATTGAACCGTGA
GAAAGCACTCATTTATTACGAAAATGGCACCCTTTCCCTTTCTTGAATAT
TAATGTTTTTATGACATCATGTTCTTCTCTTTAACTGGGTGGACCACATT
TatcttaaaatgctcttaagtTAACTGAACTTAGAGAGTTAGAGGTGGCG
CCAAATATTTGcttgggattgatattcccgtGTTTTTATGACTgggaatt
tcattgttttcatggaaaaaaaCAGCGCAAAGTTTTACAGTGAggatttg
ttgattttattattttcagtgaattttcagtttgaagggttcccactggg
tctgtgagaaggtggTTTTGATATCTTGATATCTGGTTCGAAGCCTCGCT
TTTCATGTGTGTTATCTTATAGAGTCTCCTatataaaaagaatttttatt
tggAGGATTACTAACGCATGAATAGAcgattgtttttaaaatttttagct
cAAGTACAAAGACGTTTTTGGTGTTGGTGCCACTACTTGGGATACCATTT
ATATTGGCACCCTTTGTTGAATACAGCATTTATATCGCTTACACTTTCGT
CATCATGAATGGACTCACGGTatgtggaaattttttttcatgattttgtt
tACTGACTGCTGCGactataatttttcaaattgctTGATAATTTTTACTA
AGAAAGACACATTATTTAGACATTCATTCTCACAGACTCGGTAGGATTTC
TTCAGCCAGTGGGGAAtaaataacgaactgaaactcgatggagatAGATA
TTCTAAGAGTttttggggatttcaattcttttgttttccagtcagaaaat
tcagtggggatgggaaaaatagcataatattttNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAATGAAAACTTTTGTTTAGTAAAATGTTTGGGCGTTTA
TCTTTTTCAAAGGGGCGTTTGAAATAAGGGGCGTTGATTTATGACCAAAA
TTACTGTAATAAAGTGAATGGAAACGTTATTTTTCCTTTGCATATTACTA
TTTAAATACAAATAAGTTTATATCGAGGAACTTAGAAACAGGTCAGAATA
AGCAAATACAAAATTGATACAATTATCACACATCTAAGTTTTCCTTTATT
TTAAACTTACAGCTACttatttcaaataaacgccccttcctAGGGTGGAG
cacttattgaaaattttcccaaaaggGGAGGGGCGTTCATTCGAGAATAA
CGTAAAaaggagggggcgtttattcgaggttTTTTAATGAAGTGACCAAG
TATTTTTCACAGGCACGTAACATTTAGCTTTAAGAACTCTAGGAAATCCC
CAAATTTCCCAAAGCGTATTTTTTAAGCAAGTTTTataaattatcaaatt
ttcatatttttcatgtcacTTGACCTACTTGAACTACCTACCTAAATACG
CCTCTGAATAGAACTTAGATAACGCCCTTGTTAAAAGATCTTCGGGTATG
TTtattattcatcaattttattctattcttgattgaaggccaaagattca
caaaaattcaaaacccacaaaagcaaaatattttttttctgatattatAA
CCCAAGCGAAACTAACACAATCTAATCTACGCTTAAAGTTTAaaacaatc
tttttttaaatcagactTGAGCCCAGTCCCATAGTTCGCTTTGTGATGAT
TCTGATAGAGTACTCACGATTGTATCATGCCCCAGAATGCATTTCATGTT
ATTGCCGTCCCAATGGAAATCCATCTTGCTACTATTACAACTACACATAC
ACAGtgtgtattattattattatttataaatttggtatcattggaaagat
attagttagtggaacaatttgaaatagaaaaatctttgaaataattctaa
aaatgaagataaaaatgaagaagaaaaaaatgaagatcttgtagaaaagt
gctataactatcattttcactgaagtgaaaccttgattactcaaaaataa
tcattcagtcaaaagatatcaaacaaagttataagctgattgacgtctaa
aaacgctgttttctgctgttttttgctgttttttggggtcaatcacttat
taactttgtatcataactttttattgagtaaatattttagtgaaatttct
tcacagtgatgacgtccaaagatcaaagaatctctccagtgaaaatgaaa
gttgtagcacttttctacaagatcttcatttttttcttcttcattttcat
cttctttttagaattcttttgaagatttttttatttcaaattgtttcact
cacaaatatctctccaacgataccaaatttataaataataataataataa
tgctatacaagttcgcaggccaccgtgcgagcacatgggcctctatgaac
cgctctttgttcggtttacaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNGAATTCGGTTGTTTTCgtagattttcctgaa
ttttctccgccatctttacatcttttaacaacacatccgttcagttttta
tttgacgtcatatttgctcttcatctttgataaagattgaagaattccta
caaaagttataggtaaaagaaaaaagagtgcacatttatcgtgaatagac
tttaaaatatatagtttttacTTTTGCCTCCGAAACCTCAGCATTGAcag
tttttcaatattttaatgtCAGATACAGGCAGCCCTGGACAATCACATGG
TCATTAAAAAGCGAATAATTGAGTAATTTAGAAAGGGGGTTAAATTTGTA
AACGTAGGTTGGCCTGGAGCGGAGTAAACAGTTCCATTGTTTGTTCCAAG
GTCTACTGTCGCTATTTTCTTCCGTCTACCTCCCATTTTACGGCTGTAAA
CTCCGCAGATACATATTTTTCCGATTCTACAATCCCTGTAACGTCTAAGA
TAGCCCTAGCCTTGTATTGATTTAAGATTAATCGCATTACTTTTTTCAGA
CTGTAGAGGAAACCCGACAAAACCTTCTTGTAAAGGTATTTACGAATGGA
AGACCAATTTGTGTCATCTAAACTGTACTCAGAAAGGACAACAACCAATT
TATAAAGTAATTGATAAATCATGGTGCAGTGCTCTTCCTGAACTTTATAA
ACTGGACTGCGACTCCTCGTGTCCAGGTAAATTCAAACGCCCCCTGACCT
TCAGTATAACTGTTAAGAGGCCCTCGATGCTTTGCGTGATTTCGGTGTGA
TGGGCGTGATCTATGATTCCAAAAATCTTGAAGAGAAATGTTATTTTTGA
TGTCATGTTATGATGAGGGAATCTTTTTTCGGCGTGATGTATgattaaaa
aaacgttttgaataCTTTTTGGCGTGACAGTTCACTCCGCTAAGGGGCGT
CTGTTTATgtaatgaattttattttcgaataTACTACAAATGAAAGCATA
TATTTTCTCATATAGTTTCTTATTTCCAGTGTCGTTCACGCGCCCAATTT
GATAGGAATTATCCATGAAACAACTTGTATATTTTCACTTTAGACCGATA
TGAATATATGAAAGTTTTTGGGGATGCTTTAGTTTCatgccccggggggg
ggggtacttaggcaaaaataggtgctgggtatgtgcggacggtaagggtc
gggtttttcacctttcaaagtctctctaagNgtgcggacggtaagggtcg
ggtttttcacctttcaaagtctctctaagggttacaaaaatcaagaaatt
tcaaagtagtctctctaagggtgggaaaaatcacgatttttagaaaaaaa
atttaattttgagagaaaaaatcacaaaaaattctcactaagggtaggaa
atttttgaaaatcagagaaaatttttcgaaaaagtctctctaagggtcac
tttttcactaaaatttggtctctctaagggtcggttNNNNNNNNNNNNNN
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cttttaccactttttgcactcttcggcggggggacacttttgtcccctta
ttcttttctctcccaagtcctgtgtcagagacttttttttactatataat
aaaaaatttaGTCCTCATACTTAAAAAATTCGCTCTGTGTACATAAGTTG
CATTGCAAttcgaatgtcaaaaattttccctttttctaaaaaaactatga
tttactaatgattatttactggcgattactagtactaataacCAAATAAA
ACCCTAAAATGGTCATCTAAAATGcttattcttagaaaaaaacgaGTCAA
ATTACTGTGTCATTCAACAAAATTATCTCAGTCAACACATTGTCAGCACG
TCTAAATCGTTAAAAACGTGTATGCACGTTCTAAATTTGCCAATATACTG
AGTTTCCAAACTTAGGGCtgtaactcctgaccacttgatttagaAGGGCA
TAGACCGAATGGTTTTAGAATGACGTGTATGCACGTTCTAAATTTTGCCA
ATATACTTAGTCCCAAACTTAGGactataactcctgaccacttgatttaa
aaagacatgaaccgaatgcttttagaaagagtatgAAAATACCTTTCGAA
TAGTACCAAAACCATTGTCTAACTCTCAAAAAAtcttgcgcgctggaaag
gttaaacgAGCGTGATTAGGTTTTTAATTAATCTTATCGATGCTTTTTTT
TGTCAACTATACCTAAAATTATACTTTTAGTGACAATTATGGGTATGGTG
GAACTTCTGTTTCTTTGGTTCGAGCTCTTGGTGCAAATGAGCTTCTCACA
ATGAAAATGGTAAGTACTTCTCAAAATTTACATATCCACAAATCCTCAAT
CCCTTGATTGTAAACGTTATTTCCAGTCCCGGGGGAGGAGCTACTgggtt
tgcgagatgacgggtataTCCGAGCAAAAGTTTGAagatcgacccttaga
gagactgaattttgaaaattttgaccatttgtTGACCTTTTTGCCACCCT
GAGAGAGGCTCTTTCCCCAAAATTgagtccaaatttcaagaatttatgac
catttgagggagtcgattttcgattttcgtaattttggaacccttactca
attttctttttactgttttttgtacccctttgaggaactttcgagggtgt
gaaaaagggacccttatggctcacGCATACCTGGCACCAGCTTTACCTAA
GTATTCCATCCTCCCCGGGGGTTTTCAGTAGATTGCTCACTAAAACTCAT
TTAGCTAAAAGTTAGattaaatgtcaattttagtaACCAAACTAAAGCTA
TAAGTGTTATTATCTTTcagattgaaatgaaaaatgaaaatttctactAT
CGACGGATTGGAAAAACGAATAAGGTTGATTTAACATCCATATAACCTCA
GTATCATTGTCACCATCCTCATCTTTGAAAGCACGTGACAGCTACCATCT
TGGAATCATTTTGCTTTTACTCTATTTGAATGTGTTAACAAAGAGTTGAT
TTTTATTTCACATATAGACAATTTCGTCAACGTAGCTTTCCGGTGAATTG
ATTATAAGACAAAAAGCTTCGTAAAATCTGGCACTGCGGTGTTTATCGAA
AGCAATAGACGGATGGCATACGCAGTTGTCGTAACAAACCACCCAATGGT
CAAGATTGTCAAttgtaatatttgctcttcatctttgattctttctacag
tgaatATATTGATTTatacatgcgcgataaaatatCTTTAGAGGTTTCGT
TAGAGGTTGAtacattctttgaaaacttggcccTGATACTCAGAGTAGAT
TTTCACATTATAATACGAAAACTGAATATGGAATAGTATTCACCTTGTAT
TTGTACAGAGTAAAATTTGCAGCTCAATTTGTTTGAATATTTTGGAATAA
TTTGAACCTTATCGTTACCACCTTGGTTTCAATGACTGATAAAAGATATA
ACACCGGTACACGAAGTTAATATACTGCCTTATTATGGTTTTCGATGCTG
ATTCAGTTAGAGATTTAGGAAAACACATTTCACGCTGATGGTCAGCTATG
TAGAACTTCTGAGCGAAGGCCAAAACTAAATAGCGTTTCTCTCGGcgctc
tcgggtacctaatagccgggagtttggaataagcggggggtttgaaaaaa
tctcaaaacttaataaggggggggggtttggaataaaaatgtcctgcgtg
gaaaattttcgaaaaggaggctaatacagcagaattagggcaaaagaggg
atctttcaaaaacattttccaaaaatcaataagcgggttggaataagaat
attGTCAGGCAGCCATATTTCATTTTGGCTCACCTTCGGTATGGCTAGCA
TGCTGAAGGATATTTGATAAGGAGCCTGCAACTTTCAATAGATATAGAAT
TAATATATGATTATGGAGTAAAGACATAAAGGTAATGCATACCAAAAAAG
TAACTTCAAATTAGTCTCGATCAATTCTTATCCCCGGAACAGTAATGTCA
ACCCTCGGCTGACAAatatcctgggtggaaaatttttgaaaaattaatta
gcgggccccccggctattaggtacccgagattACCGAGCGCGGTACCGGG
AGTACGTACATGATCACCAAAGTTCAAGGAAAGTTTACTTTACTTTTCAT
ATCAGACATTTATTTCATATCTTATCAGGCCAGTGTCTGCCTACTGAtac
attatgctgatataaacaaaaaaatattttttcttttgagttAGTCAAAA
ACCTGGCCTACCTCTGTGGCCCGATCATATGGTTAACCTACCCTATGACC
TACCTTATGGCCcaccaaaaaatcaatttagaCAACCTTAGACCTTTG

Coding sequence (CDS) from alignment at scaffold_26:148347..169194+

>TCONS_00055796 ID=TCONS_00055796|Name=TCONS_00055796|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at scaffold_26:148347..169194+ (Clytia hemisphaerica)
ATGATTTGGAAGGATCAAATTTGTGATGGAAAACAAGATTGTTTGaacaa
tgaagatgaagaaaactGTCGCAAGGAATATTGTCGATATAATGTTGATC
GCAACCATCTGTTATGGAGGTCTGTTGGAAGAGGGAAAACGTCAGTAATT
CAATGTAATCAAGTTCCAGTTTTAGTGAAGAATTTCACTGAATATGGCTT
AAAAGGAACAATATCAAGAACATGTGACGACACAAGTCAACCACGATGGA
TTAAAACAGATTGTCAATGTGTTATCGACGGTTTCCCAAAGTTTCAAACA
AATCTATCTattCATAATGTAACTTACAAATCAATCAACAACGACATCGT
GCGACTTTACAGACATTTCAACATATCTCCGAGCAGTATTCCACATGTTT
TGAGTTCCTTAACATCATTCTCCAAAAACTCAAATTTGGCAACAGCTCTG
AAGGAAGCTTCGTTTACCAAACTACTGAATGGCACAAGAAGAATTATCAT
ATATTAGATGATTTGGAAGGATCAAATTTGTGATGGAAAACAAGATTGTT
TGaacaatgaagatgaagaaaactGTCGCAAGGAATATTGTCGATATAAT
GTTGATCGCAACCATCTGTTATGGAGGTCTGTTGGAAGAGGGAAAACGTC
AGTAATTCAATGTAATCAAGTTCCAGTTTTAGTGAAGAATTTCACTGAAT
ATGGCTTAAAAGGAACAATATCAAGAACATGTGACGACACAAGTCAACCA
CGATGGATTAAAACAGATTGTCAATGTGTTATCGACGGTTTCCCAAAGTT
TCAAACAAATCTATCTattCATAATGTAACTTACAAATCAATCAACAACG
ACATCGTGCGACTTTACAGACATTTCAACATATCTCCGAGCAGTATTCCA
CATGTTTTGAGTTCCTTAACATCATTCTCCAAAAACTCAAATTTGGCAAC
AGCTCTGAAGGAAGCTTCGTTTACCAAACTACTGAATGGCACAAGAAGAA
TTATCATATATTAGATGATTTGGAAGGATCAAATTTGTGATGGAAAACAA
GATTGTTTGaacaatgaagatgaagaaaactGTCGCAAGGAATATTGTCG
ATATAATGTTGATCGCAACCATCTGTTATGGAGGTCTGTTGGAAGAGGGA
AAACGTCAGTAATTCAATGTAATCAAGTTCCAGTTTTAGTGAAGAATTTC
ACTGAATATGGCTTAAAAGGAACAATATCAAGAACATGTGACGACACAAG
TCAACCACGATGGATTAAAACAGATTGTCAATGTGTTATCGACGGTTTCC
CAAAGTTTCAAACAAATCTATCTattCATAATGTAACTTACAAATCAATC
AACAACGACATCGTGCGACTTTACAGACATTTCAACATATCTCCGAGCAG
TATTCCACATGTTTTGAGTTCCTTAACATCATTCTCCAAAAACTCAAATT
TGGCAACAGCTCTGAAGGAAGCTTCGTTTACCAAACTACTGAATGGCACA
AGAAGAATTATCATATATTAGATGATTTGGAAGGATCAAATTTGTGATGG
AAAACAAGATTGTTTGaacaatgaagatgaagaaaactGTCGCAAGGAAT
ATTGTCGATATAATGTTGATCGCAACCATCTGTTATGGAGGTCTGTTGGA
AGAGGGAAAACGTCAGTAATTCAATGTAATCAAGTTCCAGTTTTAGTGAA
GAATTTCACTGAATATGGCTTAAAAGGAACAATATCAAGAACATGTGACG
ACACAAGTCAACCACGATGGATTAAAACAGATTGTCAATGTGTTATCGAC
GGTTTCCCAAAGTTTCAAACAAATCTATCTattCATAATGTAACTTACAA
ATCAATCAACAACGACATCGTGCGACTTTACAGACATTTCAACATATCTC
CGAGCAGTATTCCACATGTTTTGAGTTCCTTAACATCATTCTCCAAAAAC
TCAAATTTGGCAACAGCTCTGAAGGAAGCTTCGTTTACCAAACTACTGAA
TGGCACAAGAAGAATTATCATATATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035124XLOC_035124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055796-exon-scaffold_26-1491911889:148347..148809TCONS_00055796-exon-scaffold_26-1491911889:148347..148809Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1510915933:148347..148809TCONS_00055796-exon-scaffold_26-1510915933:148347..148809Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1575043694:148347..148809TCONS_00055796-exon-scaffold_26-1575043694:148347..148809Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1491911889:149620..149748TCONS_00055796-exon-scaffold_26-1491911889:149620..149748Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1510915933:149620..149748TCONS_00055796-exon-scaffold_26-1510915933:149620..149748Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1575043694:149620..149748TCONS_00055796-exon-scaffold_26-1575043694:149620..149748Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1491911889:150287..150390TCONS_00055796-exon-scaffold_26-1491911889:150287..150390Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1510915933:150287..150390TCONS_00055796-exon-scaffold_26-1510915933:150287..150390Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1575043694:150287..150390TCONS_00055796-exon-scaffold_26-1575043694:150287..150390Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1491911889:150524..150735TCONS_00055796-exon-scaffold_26-1491911889:150524..150735Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1510915933:150524..150735TCONS_00055796-exon-scaffold_26-1510915933:150524..150735Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1575043694:150524..150735TCONS_00055796-exon-scaffold_26-1575043694:150524..150735Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1491911889:150912..151006TCONS_00055796-exon-scaffold_26-1491911889:150912..151006Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1510915933:150912..151006TCONS_00055796-exon-scaffold_26-1510915933:150912..151006Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1575043694:150912..151006TCONS_00055796-exon-scaffold_26-1575043694:150912..151006Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1491911889:167077..167155TCONS_00055796-exon-scaffold_26-1491911889:167077..167155Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1510915933:167077..167155TCONS_00055796-exon-scaffold_26-1510915933:167077..167155Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1575043694:167077..167155TCONS_00055796-exon-scaffold_26-1575043694:167077..167155Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1491911889:167667..169194TCONS_00055796-exon-scaffold_26-1491911889:167667..169194Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1510915933:167667..169194TCONS_00055796-exon-scaffold_26-1510915933:167667..169194Clytia hemisphaericaexon
TCONS_00055796-exon-scaffold_26-1575043694:167667..169194TCONS_00055796-exon-scaffold_26-1575043694:167667..169194Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055796-proteinTCONS_00055796-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:148347..169194 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.128383	0.135941	0.256756	0.299812	0.473806	0.32222	0.845128	1.21614	1.09477	0.751438	0.259684	0.793291	0.804916	1.00882	0.0943055	0.135787	0.100046	0.0694136	0.153346	0.0515896	0.191274	0.180339	0.10626	0.111093	0.617101	1.59389	0.258065	0.158597	0.225266	0.0870119
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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