TCONS_00055821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055821
Unique NameTCONS_00055821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055821 ID=TCONS_00055821|Name=TCONS_00055821|organism=Clytia hemisphaerica|type=transcript|length=515bp
CCCCATTTAGGTAAATAAAGACTCTAAGATAAAATTTCACGTATATATAT
GAAAAATACACAACTCTAAGATAAAAATGCATGTACATGAAAAATACACA
ACTCTAAGATAAAAATGCATGTACATGAAAAATACACAACTCTAAGATAA
AAATGCATGTACATGAAAAATACACAACTCTAAGATAAAAATGCATGTAC
ATGAAAAATACACAACTAACTCTCAGATAAAAATGTGCATGCACAAGAAA
AATATCAACCTGTATGAGATAAAAATATATGGAGTAGATAAAATACTAAC
TCTAGATAAAAACACATGTAATAAGATAAAAACAAGTCTTGGATAAAAAT
ACAAACTTTAAGATAAAATGAGACCTTTCAAGACCCAGACCAAAAGTGAG
CCTAAGTTAAGGAATTTAAgacaaaaaaacgtgtaacagtTAAAATTAgt
ataaaacttgttttctaGATCAACATTGTATTTCTTCCAATAATGAAACA
TTTGTAGAAGGGCTN
Run BLAST on NCBI

transcript from alignment at scaffold_260:13928..14562-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055821 ID=TCONS_00055821|Name=TCONS_00055821|organism=Clytia hemisphaerica|type=transcript|length=635bp|location=Sequence derived from alignment at scaffold_260:13928..14562- (Clytia hemisphaerica)
CCCCATTTAGGTAAATAAAGACTCTAAGATAAAATTTCACGTATATATAT
GAAAAATACACAACTCTAAGATAAAAATGCATGTACATGAAAAATACACA
ACTCTCAGATAAAAATGTGCATGCACATGAAAAATACACAACTCTAAGAT
AAAAATGCATGTACATGAAAAATACACAACTCTCAGATAAAAATGTGCAT
GCACATGAAAAATACACAACTCTAAGATAAAAATGCATGTACATGAAAAA
TACACAACTCTCAGATAAAAATGTGCATGCACATGAAAAATACACAACTC
TAAGATAAAAATGCATGTACATGAAAAATACACAACTAACTCTCAGATAA
AAATGTGCATGCACAAGAAAAATATCAACCTGTATGAGATAAAAATATAT
GGAGTAGATAAAATACTAACTCTAGATAAAAACACATGTAATAAGATAAA
AACAAGTCTTGGATAAAAATACAAACTTTAAGATAAAATGAGACCTTTCA
AGACCCAGACCAAAAGTGAGCCTAAGTTAAGGAATTTAAGACAAAAAAAC
GTGTAACAGTTAAAATTAGTATAAAACTTGTTTTCTAGATCAACATTGTA
TTTCTTCCAATAATGAAACATTTGTAGAAGGGCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035145XLOC_035145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055821-exon-scaffold_260-1575043694:14477..14562TCONS_00055821-exon-scaffold_260-1575043694:14477..14562Clytia hemisphaericaexon
TCONS_00055821-exon-scaffold_260-1575043694:14399..14436TCONS_00055821-exon-scaffold_260-1575043694:14399..14436Clytia hemisphaericaexon
TCONS_00055821-exon-scaffold_260-1575043694:14321..14358TCONS_00055821-exon-scaffold_260-1575043694:14321..14358Clytia hemisphaericaexon
TCONS_00055821-exon-scaffold_260-1575043694:13928..14280TCONS_00055821-exon-scaffold_260-1575043694:13928..14280Clytia hemisphaericaexon
TCONS_00055821-exon-scaffold_260-1510915933:14477..14562TCONS_00055821-exon-scaffold_260-1510915933:14477..14562Clytia hemisphaericaexon
TCONS_00055821-exon-scaffold_260-1510915933:14399..14436TCONS_00055821-exon-scaffold_260-1510915933:14399..14436Clytia hemisphaericaexon
TCONS_00055821-exon-scaffold_260-1510915933:14321..14358TCONS_00055821-exon-scaffold_260-1510915933:14321..14358Clytia hemisphaericaexon
TCONS_00055821-exon-scaffold_260-1510915933:13928..14280TCONS_00055821-exon-scaffold_260-1510915933:13928..14280Clytia hemisphaericaexon
TCONS_00055821-exon-scaffold_260-1491911889:14477..14562TCONS_00055821-exon-scaffold_260-1491911889:14477..14562Clytia hemisphaericaexon
TCONS_00055821-exon-scaffold_260-1491911889:14399..14436TCONS_00055821-exon-scaffold_260-1491911889:14399..14436Clytia hemisphaericaexon
TCONS_00055821-exon-scaffold_260-1491911889:14321..14358TCONS_00055821-exon-scaffold_260-1491911889:14321..14358Clytia hemisphaericaexon
TCONS_00055821-exon-scaffold_260-1491911889:13928..14280TCONS_00055821-exon-scaffold_260-1491911889:13928..14280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_260supercontigscaffold_260:13928..14562 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.369281	0.131274	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2185	0	0	0	0.525268	0	0	1.1661	0	0	2.32031	0.984621	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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