TCONS_00055830 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055830
Unique NameTCONS_00055830
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055830 ID=TCONS_00055830|Name=TCONS_00055830|organism=Clytia hemisphaerica|type=transcript|length=620bp
NTCTAGGCTCAGATATAGGGAAAAATttagcatatggcaagcattgcttg
agcctacaaaaaatatttttttcctgattttggcttttttggctggaatt
tcatggattttcagcatttcctaaatttatgctttagatttaagcatccc
ctcaaacatttttcagccttatcaagctttcgacctaagcatctctgagc
ctgttttcggatttttgtatgcttctAAAAAATGGATTGGATTGTCTCTT
TCGATCGTTTACCATGATTTGTTCTCCGTCAATCAATCGAAATAGAACGA
TACTCTTTCTCCGATGGCAGTCTTTTGAAGTATTATCACGttgttatcat
ttcaaatttcgtTCAAGAACTTCAACGTNCAGCATAAATGTCCAGCATCC
AGTTAACAGCTAAAATGGAAAGGGAATTGCTTCAATCATAAGCCATGATC
TGCATGGTTAAAAGCAGGCGTcatgatggatattcttaattttctaCCAA
GAATGCCACACAGGATATCAATGGGACTGATCGTATCGGATGAAATGGTA
TGATGCGATAGAAAGGAATAACAAAAGCTCTCCAATACTGTATGCTTTCC
TTAATGGCACCCTTAACACA
Run BLAST on NCBI

transcript from alignment at scaffold_260:59111..59730

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055830 ID=TCONS_00055830|Name=TCONS_00055830|organism=Clytia hemisphaerica|type=transcript|length=620bp|location=Sequence derived from alignment at scaffold_260:59111..59730 (Clytia hemisphaerica)
TGTGTTAAGGGTGCCATTAAGGAAAGCATACAGTATTGGAGAGCTTTTGT
TATTCCTTTCTATCGCATCATACCATTTCATCCGATACGATCAGTCCCAT
TGATATCCTGTGTGGCATTCTTGGtagaaaattaagaatatccatcatgA
CGCCTGCTTTTAACCATGCAGATCATGGCTTATGATTGAAGCAATTCCCT
TTCCATTTTAGCTGTTAACTGGATGCTGGACATTTATGCTGNACGTTGAA
GTTCTTGAacgaaatttgaaatgataacaaCGTGATAATACTTCAAAAGA
CTGCCATCGGAGAAAGAGTATCGTTCTATTTCGATTGATTGACGGAGAAC
AAATCATGGTAAACGATCGAAAGAGACAATCCAATCCATTTTTTagaagc
atacaaaaatccgaaaacaggctcagagatgcttaggtcgaaagcttgat
aaggctgaaaaatgtttgaggggatgcttaaatctaaagcataaatttag
gaaatgctgaaaatccatgaaattccagccaaaaaagccaaaatcaggaa
aaaaatattttttgtaggctcaagcaatgcttgccatatgctaaATTTTT
CCCTATATCTGAGCCTAGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035150XLOC_035150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055830-exon-scaffold_260-1491911889:59111..59730TCONS_00055830-exon-scaffold_260-1491911889:59111..59730Clytia hemisphaericaexon
TCONS_00055830-exon-scaffold_260-1510915933:59111..59730TCONS_00055830-exon-scaffold_260-1510915933:59111..59730Clytia hemisphaericaexon
TCONS_00055830-exon-scaffold_260-1575043694:59111..59730TCONS_00055830-exon-scaffold_260-1575043694:59111..59730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_260supercontigscaffold_260:59111..59730 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.35316	0.875095	0.590772	2.13486	1.15938	1.8182	1.82433	2.41347	1.01897	0.521947	2.80094	1.21406	1.30641	4.53835	4.00566	1.48687	1.56704	1.86409	2.44806	5.64268	4.70919	1.33029	1.73618	0	0.0985158	1.66753	1.18104	1.44627	1.48029
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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