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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055843 ID=TCONS_00055843|Name=TCONS_00055843|organism=Clytia hemisphaerica|type=transcript|length=879bp
GCTTTGGAGCGAAAAGAACCATAGCTGACGGTTGCTGAACTGTTCAGata
aaattgaatcaaaaagtttaaaacttgGTTGGGTAACTCTGAATCAAGAA
GTTTGGTGAAAAGTGTTTGCCAGTTGCAACAGTCAAAGGCTTTCTCTATG
TCCAGGCTACAAACGTATACCGGTGTATTGTTGTTATTATAATATCGTAT
TGTATCTTGGATGACGAGCTCAGCATGAATCGATGATGATGCTTTAGTGA
AGCCGTATTGAGAAACATTGTGGTCCGTGAGTTGAGGGCATTTCTCAATA
ATGATAAGTTCAAGTATTTTTGTGATGATCGGGAGAAGACTTATTCCACG
GTAGTTATTCGCGTCGTTCAAAGACTTTTTGTGTGATTTCACCAGCGGTA
TAAGTATTGACGTACTCAGTGATGCAGGAATGTCTTTGGAGCGAAATATT
TCGTTTATTAGTTTGGTGAGGTATTCATTGAATGTGTCACTTGATGCGTA
TTTGTAATGTTCTGGTAACAACTGGAAAGGGTCACGAGATTTACCTGTTT
TAAGTTTTTCTATTACTGATGAAACGTCATGCTGGGTAACGTAAAATTCG
TCGGAATCGAGATCTTTTTGAAGTTCATGTAGCATATTAACAAGTTCTTC
ATTCGATGTGGTGTTATCAATGGTGTCGATTCTTGGTGTATTAAGGAGCT
TATCAAAGTGGTCACCGAATTCTTTAGCAATGTCGATTTTGGTAGATTTG
CCATTGATTGTGTATAATTTCTGTTGCTTTTTCTTAATTAGATTAATTTG
AGCCCAGTATGAAGATGGGTTTAAGTTCTTGAGCTTTTCCACATTAATAT
AGTGTTCAACTGTTGCTTGGTGCTTTGCG Run BLAST on NCBI protein sequence of TCONS_00055843-protein >TCONS_00055843-protein ID=TCONS_00055843-protein|Name=TCONS_00055843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
AKHQATVEHYINVEKLKNLNPSSYWAQINLIKKKQQKLYTINGKSTKIDI
AKEFGDHFDKLLNTPRIDTIDNTTSNEELVNMLHELQKDLDSDEFYVTQH
DVSSVIEKLKTGKSRDPFQLLPEHYKYASSDTFNEYLTKLINEIFRSKDI
PASLSTSILIPLVKSHKKSLNDANNYRGISLLPIITKILELIIIEKCPQL
TDHNVSQYGFTKASSSIHAELVIQDTIRYYNNNNTPVYVCSLDIEKAFDC
CNWQTLFTKLLDSELPNQVLNFLIQFYLNSSATVSYGSFRSK Run BLAST on NCBI transcript from alignment at scaffold_262:29331..30209 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055843 ID=TCONS_00055843|Name=TCONS_00055843|organism=Clytia hemisphaerica|type=transcript|length=879bp|location=Sequence derived from alignment at scaffold_262:29331..30209 (Clytia hemisphaerica)
CGCAAAGCACCAAGCAACAGTTGAACACTATATTAATGTGGAAAAGCTCA
AGAACTTAAACCCATCTTCATACTGGGCTCAAATTAATCTAATTAAGAAA
AAGCAACAGAAATTATACACAATCAATGGCAAATCTACCAAAATCGACAT
TGCTAAAGAATTCGGTGACCACTTTGATAAGCTCCTTAATACACCAAGAA
TCGACACCATTGATAACACCACATCGAATGAAGAACTTGTTAATATGCTA
CATGAACTTCAAAAAGATCTCGATTCCGACGAATTTTACGTTACCCAGCA
TGACGTTTCATCAGTAATAGAAAAACTTAAAACAGGTAAATCTCGTGACC
CTTTCCAGTTGTTACCAGAACATTACAAATACGCATCAAGTGACACATTC
AATGAATACCTCACCAAACTAATAAACGAAATATTTCGCTCCAAAGACAT
TCCTGCATCACTGAGTACGTCAATACTTATACCGCTGGTGAAATCACACA
AAAAGTCTTTGAACGACGCGAATAACTACCGTGGAATAAGTCTTCTCCCG
ATCATCACAAAAATACTTGAACTTATCATTATTGAGAAATGCCCTCAACT
CACGGACCACAATGTTTCTCAATACGGCTTCACTAAAGCATCATCATCGA
TTCATGCTGAGCTCGTCATCCAAGATACAATACGATATTATAATAACAAC
AATACACCGGTATACGTTTGTAGCCTGGACATAGAGAAAGCCTTTGACTG
TTGCAACTGGCAAACACTTTTCACCAAACTTCTTGATTCAGAGTTACCCA
ACcaagttttaaactttttgattcaattttatCTGAACAGTTCAGCAACC
GTCAGCTATGGTTCTTTTCGCTCCAAAGC Coding sequence (CDS) from alignment at scaffold_262:29331..30209 >TCONS_00055843 ID=TCONS_00055843|Name=TCONS_00055843|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_262:29331..30209 (Clytia hemisphaerica)
GCAAAGCACCAAGCAACAGTTGAACACTATATTAATGTGGAAAAGCTCAA
GAACTTAAACCCATCTTCATACTGGGCTCAAATTAATCTAATTAAGAAAA
AGCAACAGAAATTATACACAATCAATGGCAAATCTACCAAAATCGACATT
GCTAAAGAATTCGGTGACCACTTTGATAAGCTCCTTAATACACCAAGAAT
CGACACCATTGATAACACCACATCGAATGAAGAACTTGTTAATATGCTAC
ATGAACTTCAAAAAGATCTCGATTCCGACGAATTTTACGTTACCCAGCAT
GACGTTTCATCAGTAATAGAAAAACTTAAAACAGGTAAATCTCGTGACCC
TTTCCAGTTGTTACCAGAACATTACAAATACGCATCAAGTGACACATTCA
ATGAATACCTCACCAAACTAATAAACGAAATATTTCGCTCCAAAGACATT
CCTGCATCACTGAGTACGTCAATACTTATACCGCTGGTGAAATCACACAA
AAAGTCTTTGAACGACGCGAATAACTACCGTGGAATAAGTCTTCTCCCGA
TCATCACAAAAATACTTGAACTTATCATTATTGAGAAATGCCCTCAACTC
ACGGACCACAATGTTTCTCAATACGGCTTCACTAAAGCATCATCATCGAT
TCATGCTGAGCTCGTCATCCAAGATACAATACGATATTATAATAACAACA
ATACACCGGTATACGTTTGTAGCCTGGACATAGAGAAAGCCTTTGACTGT
TGCAACTGGCAAACACTTTTCACCAAACTTCTTGATTCAGAGTTACCCAA
CcaagttttaaactttttgattcaattttatCTGAACAGTTCAGCAACCG
TCAGCTATGGTTCTTTTCGCTCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055843-exon-scaffold_262-1491911889:29331..30209 | TCONS_00055843-exon-scaffold_262-1491911889:29331..30209 | Clytia hemisphaerica | exon |
| TCONS_00055843-exon-scaffold_262-1510915933:29331..30209 | TCONS_00055843-exon-scaffold_262-1510915933:29331..30209 | Clytia hemisphaerica | exon |
| TCONS_00055843-exon-scaffold_262-1575043694:29331..30209 | TCONS_00055843-exon-scaffold_262-1575043694:29331..30209 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_262 | supercontig | scaffold_262:29331..30209 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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