TCONS_00055844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055844
Unique NameTCONS_00055844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length108

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055844 ID=TCONS_00055844|Name=TCONS_00055844|organism=Clytia hemisphaerica|type=transcript|length=108bp
NNGATAACATCCCTCTACGAGATCTTGAGAAAACTTTAGAAGGAGCTTTG
AACTGGAAAACATCATCTTCTAGGGACCACAAAACACCTAGCACACGTTC
AGTAGATT
Run BLAST on NCBI

transcript from alignment at scaffold_262:44666..44773

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055844 ID=TCONS_00055844|Name=TCONS_00055844|organism=Clytia hemisphaerica|type=transcript|length=108bp|location=Sequence derived from alignment at scaffold_262:44666..44773 (Clytia hemisphaerica)
AATCTACTGAACGTGTGCTAGGTGTTTTGTGGTCCCTAGAAGATGATGTT TTCCAGTTCAAAGCTCCTTCTAAAGTTTTCTCAAGATCTCGTAGAGGGAT GTTATCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035160XLOC_035160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055844-exon-scaffold_262-1491911889:44666..44773TCONS_00055844-exon-scaffold_262-1491911889:44666..44773Clytia hemisphaericaexon
TCONS_00055844-exon-scaffold_262-1510915933:44666..44773TCONS_00055844-exon-scaffold_262-1510915933:44666..44773Clytia hemisphaericaexon
TCONS_00055844-exon-scaffold_262-1575043694:44666..44773TCONS_00055844-exon-scaffold_262-1575043694:44666..44773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_262supercontigscaffold_262:44666..44773 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
NNGATAACATCCCTCTACGAGATCTTGAGAAAACTTTAGAAGGAGCTTTGAACTGGAAAACATCATCTTCTAGGGACCACAAAACACCTAGCACACGTTCAGTAGATT102030405060708090100Sequence
Match NameE-valueIdentityDescription
back to top