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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055839 ID=TCONS_00055839|Name=TCONS_00055839|organism=Clytia hemisphaerica|type=transcript|length=1128bp
GACTGAAGCTTTCATCGACAAACAGTTCACAGACGctctgaaaattgaag
ttctTGATGAAATAAAGACATTcgtctcaagaaaaataaaagatgaaCTT
GAGTTTCTGAAACCGTTGAATCATGAAAATTCTTCAAGACATGAACAAAG
TTACCATACTGAAGAAAAATTTATTGACCACTTGAAAAGGGAGGTAGAAT
TTTTAAGGAGGCAGCTTGAAAATCGGGATGATATCATCTACACGCTTCTA
CAAGAAAAGTCctctgtaaatcaaaacattaaaaaagacaCACAAAATGA
CGAATTTCTTTTACCGAAAAATCCTATTAAGCCTATTAACAACGCTCAAC
TTGATGGAAAAATAACACTTGATAATCAATATGATGCACTTTTCATTCAA
GAAAATGATAATGAGAATTTAATTGCTTCGGAACAAAATGATAATGTTAC
AAGGCGTAAGTCTCGCAATAGGAATAACAAAAAGAGAAACTCTGTTAACA
ATAATAATGATAACAGAAAGACTGTTGCGGTTGTTGGTGATTCAATGATC
AAATACATTAAAGGTTTCAAACTATCAAATAAATCAAACAAAGTTGTTGT
GAAAACTTTTCCTGGGGCTAAGGTGGATTGTATGAAACACTACATTAAAC
CAACATTAGATAAAAAGCCGGATGCTGTTATCATACACTAATTTTACTGA
CTATGGAGCATTTGACCATGGCATCATGTGCATAGATGTCAACATTGTCC
TGATTATCAATTTGGTGTCATACCTACATTTAAGGAGACACTTCCGCTCT
CTCAATCATCAGTCCAAAGGGATAGAAAATAGAGGAGGTTGCACGTTGCA
GGTTGCACGTTGCTTTCTattcaatttcctttgttttgcaacaaagaaaa
atcgcCTTTGAAGTGAGCTGAGTTATGCCGCCAATCGAGAAGGAAGCAAA
CATGGCGGGTCGAAGCGCTGGACAAACACTCAATCAGTTGGAACCATGTG
GTACAACTCTGGGAGTTCAAGAATACTAAAATCCTAGGGCTTTATACATG
ATCAAATTAACAAGAGAACACATCGACTAAATATGATGAACGTTTAAACT
TGCAGCTCAGGTAACTTAGATGATTACC Run BLAST on NCBI protein sequence of TCONS_00055839-protein >TCONS_00055839-protein ID=TCONS_00055839-protein|Name=TCONS_00055839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
TEAFIDKQFTDALKIEVLDEIKTFVSRKIKDELEFLKPLNHENSSRHEQS
YHTEEKFIDHLKREVEFLRRQLENRDDIIYTLLQEKSSVNQNIKKDTQND
EFLLPKNPIKPINNAQLDGKITLDNQYDALFIQENDNENLIASEQNDNVT
RRKSRNRNNKKRNSVNNNNDNRKTVAVVGDSMIKYIKGFKLSNKSNKVVV
KTFPGAKVDCMKHYIKPTLDKKPDAVIIH Run BLAST on NCBI transcript from alignment at scaffold_262:54259..56843+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055839 ID=TCONS_00055839|Name=TCONS_00055839|organism=Clytia hemisphaerica|type=transcript|length=2585bp|location=Sequence derived from alignment at scaffold_262:54259..56843+ (Clytia hemisphaerica)
GACTGAAGCTTTCATCGACAAACAGTTCACAGACGctctgaaaattgaag
ttctTGATGAAATAAAGACATTcgtctcaagaaaaataaaagatgaaCTT
GAGTTTCTGAAACCGTTGAATCATGAAAATTCTTCAAGACATGAACAAAG
TTACCATACTGAAGAAAAATTTATTGACCACTTGAAAAGGGAGGTAGAAT
TTTTAAGGAGGCAGCTTGAAAATCGGGATGATATCATCTACACGCTTCTA
CAAGAAAAGTCctctgtaaatcaaaacattaaaaaagacaCACAAAATGA
CGAATTTCTTTTACCGAAAAATCCTATTAAGCCTATTAACAACGCTCAAC
TTGATGGAAAAATAACACTTGATAATCAATATGATGCACTTTTCATTCAA
GAAAATGATAATGAGAATTTAATTGCTTCGGAACAAAATGATAATGTTAC
AAGGCGTAAGTCTCGCAATAGGAATAACAAAAAGAGAAACTCTGTTAACA
ATAATAATGATAACAGAAAGACTGTTGCGGTTGTTGGTGATTCAATGATC
AAATACATTAAAGGTTTCAAACTATCAAATAAATCAAACAAAGTTGTTGT
GAAAACTTTTCCTGGGGCTAAGGTGGATTGTATGAAACACTACATTAAAC
CAACATTAGATAAAAAGCCGGATGCTGTTATCATACACTAATTTTACTGA
CTATGGAGCATTTGACCATGGCATCATGTGCATAGATGTCAACATTGTCC
TGATTATCAATTTGGTGTCATACCTACATTTAAGGAGACACTTCCGCTCT
CTCAATCATCAGTCCAAAGGGATAGAAAATAGAGGAGGTTGCACGTTGCA
GGTTGCACGTTGCTTTCTattcaatttcctttgttttgcaacaaagaaaa
atcgcCTTTGAAGTGAGCTGAGTTATGCCGCCAATCGAGAAGGAAGCAAA
CATGGCGGGTCGAAGCGGTAATTTTTCTGctgttatttttgttatgtCTA
TTCGAGTTATGACTAAAACAACGTCTACAGCAAGTACTACATTGTTTAAA
ACATCTCAAATGCTTTTGGATATAtatatttcaaccaatcaaatgatTTG
TTTACGTTTTGACTAAGGATACAGTGAAATTATCATCGAAGAAAGATAGC
CTGTCTTGTTGAGTAGCTAACAGTACCTACTGATGGAATTCACTCGAAAT
CGAAAAAatggacaatttttttcaaatagggAACAATTTTCCTTGGTAGA
GGATGCCTTGAGGTATGTATATCTGAAGTTTCTAGTTTGGTCTGGCTCTT
ATCACTGTGGTCTGGCTCTTTGAGTTCAGcccatttttaaatttcatgta
CTCAAACATCGACTAGGTAGTTCTTCCAGTTCTTGTTGTCTTTAACTTTG
TTTACGTGATCAGCTAAAAGTTGGCAGTTAATTTCGAAAAGTTTGCTTCT
TGGTAATACTGAAGAAAGAGATGGAAGAAGAATTTGAATTTCGTCGCAAA
CAAACAGCTGACTGCCTTAGTAAAGTAGTGTAGATTATTATGCGGCCGGT
GCGTGATATGATAAGCCGattcatcataaaaagtaagacTGTAGAAAACT
TAAAGAGACAGCTTCTTTTAAAGATGCTTTCAATGCTTTGGGAGTTGATA
TTACTAATGATGCTGTTGATGTTCATCCTGAGAAAATAGCTGTGAAAAGT
GTAGAGTTGTTTGTACGAGTTTGAAACAGCATTGAAAGGCACCCAGAGGC
ACCCAAGCTGAAAGTAGGAAAAAAGAGAAAGCTAGGCATAAATCAACACA
GTGTGtataaaacaacaacaacatcagaCATTGATACCAGTGGTTTCGCA
GATTGTGTTGATGGagagaaaatttcagaaattaaagAGACCGTGGCTTT
GTTTAATTATTGATGCTGAAGACTTTATATTTGTTATTGATTGGTTTTTT
GAATTGGGTGAAATAAATGAGGAAATCAATGATAAGTTGGAAAGGCAATG
TGATGAGGAGGGCCAACAAGCAAGACAATCAGCCTCGCATGTTTTAGCTT
TCATAGTACGAAGTATCTACACTGgattacttttgtttttgtttttttcc
ctACTGCCATCTGCTTCAAGTGATGAGTTATTTCCTGTTGTCTGGGAGCT
GTTGAAGTGTTGgaatatttgagtttgaaagtCAGGTGTTTGGTATCTGA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAATGGTTTGTCTAT
TATTTCCAGAGGAAATACCTTAAATGATATCAATGATgatttgtttgaaa
tatttatcaCTACCAGgtgttgaaattcaaaaaaaaaagattgaaattat
ATGGTCTAATTCCTTTCCTTTTAGCTGGACAAACACTCAATCAGTTGGAA
CCATGTGGTACAACTCTGGGAGTTCAAGAATACTAAAATCCTAGGGCTTT
ATACATGATCAAATTAACAAGAGAACACATCGACTAAATATGATGAACGT
TTAAACTTGCAGCTCAGGTAACTTAGATGATTACC Coding sequence (CDS) from alignment at scaffold_262:54259..56843+ >TCONS_00055839 ID=TCONS_00055839|Name=TCONS_00055839|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_262:54259..56843+ (Clytia hemisphaerica)
ACTGAAGCTTTCATCGACAAACAGTTCACAGACGctctgaaaattgaagt
tctTGATGAAATAAAGACATTcgtctcaagaaaaataaaagatgaaCTTG
AGTTTCTGAAACCGTTGAATCATGAAAATTCTTCAAGACATGAACAAAGT
TACCATACTGAAGAAAAATTTATTGACCACTTGAAAAGGGAGGTAGAATT
TTTAAGGAGGCAGCTTGAAAATCGGGATGATATCATCTACACGCTTCTAC
AAGAAAAGTCctctgtaaatcaaaacattaaaaaagacaCACAAAATGAC
GAATTTCTTTTACCGAAAAATCCTATTAAGCCTATTAACAACGCTCAACT
TGATGGAAAAATAACACTTGATAATCAATATGATGCACTTTTCATTCAAG
AAAATGATAATGAGAATTTAATTGCTTCGGAACAAAATGATAATGTTACA
AGGCGTAAGTCTCGCAATAGGAATAACAAAAAGAGAAACTCTGTTAACAA
TAATAATGATAACAGAAAGACTGTTGCGGTTGTTGGTGATTCAATGATCA
AATACATTAAAGGTTTCAAACTATCAAATAAATCAAACAAAGTTGTTGTG
AAAACTTTTCCTGGGGCTAAGGTGGATTGTATGAAACACTACATTAAACC
AACATTAGATAAAAAGCCGGATGCTGTTATCATACACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055839-exon-scaffold_262-1491911889:54259..55225 | TCONS_00055839-exon-scaffold_262-1491911889:54259..55225 | Clytia hemisphaerica | exon |
| TCONS_00055839-exon-scaffold_262-1510915933:54259..55225 | TCONS_00055839-exon-scaffold_262-1510915933:54259..55225 | Clytia hemisphaerica | exon |
| TCONS_00055839-exon-scaffold_262-1575043694:54259..55225 | TCONS_00055839-exon-scaffold_262-1575043694:54259..55225 | Clytia hemisphaerica | exon |
| TCONS_00055839-exon-scaffold_262-1491911889:56683..56843 | TCONS_00055839-exon-scaffold_262-1491911889:56683..56843 | Clytia hemisphaerica | exon |
| TCONS_00055839-exon-scaffold_262-1510915933:56683..56843 | TCONS_00055839-exon-scaffold_262-1510915933:56683..56843 | Clytia hemisphaerica | exon |
| TCONS_00055839-exon-scaffold_262-1575043694:56683..56843 | TCONS_00055839-exon-scaffold_262-1575043694:56683..56843 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_262 | supercontig | scaffold_262:54259..56843 + |
Blast
The following BLAST results are available for this feature:
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