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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055840 ID=TCONS_00055840|Name=TCONS_00055840|organism=Clytia hemisphaerica|type=transcript|length=674bp
TTCTGctgttatttttgttatgtCTATTCGAGTTATGACTAAAACAACGT
CTACAGCAAGTACTACATTGTTTAAAACATCTCAAATGCTTTTGGATATA
tatatttcaaccaatcaaatgatTTGTTTACGTTTTGACTAAGGATACAG
TGAAATTATCATCGAAGAAAGATAGCCTGTCTTGTTGAGTAGCTAACAGT
ACCTACTGATGGAATTCACTCGAAATCGAAAAAatggacaatttttttca
aatagggAACAATTTTCCTTGGTAGAGGATGCCTTGAGCTGGACAAACAC
TCAATCAGTTGGAACCATGTGGTACAACTCTGGGAGTTCAAGAATACTAA
AATCCTAGGGCTTTATACATGATCAAATTAACAAGAGAACACATCGACTA
AATATGATGAACGTTTAAACTTGCAGCTCAGtgGCTGAcgaatacatttt
tgaaaagtgggAAAACAGAGGCACCTACACCTGGCTTGCAAAGGAGGAAA
GAAAAAAGGAGACTGTACCTGGCTATTCAAACTGTTGAAGGGCTGCATGC
AAACTACAGGTTTGTAATGATTTTGCATTCAAAGGTTTTTTAGTGTGAAA
tagtacaatgttaattttaagCAATCAATGTTTCTGCGAGTGCTCCTGGC
CTTGTATGTTTTAGAggtggtttt Run BLAST on NCBI transcript from alignment at scaffold_262:55233..57872+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055840 ID=TCONS_00055840|Name=TCONS_00055840|organism=Clytia hemisphaerica|type=transcript|length=2640bp|location=Sequence derived from alignment at scaffold_262:55233..57872+ (Clytia hemisphaerica)
TTCTGctgttatttttgttatgtCTATTCGAGTTATGACTAAAACAACGT
CTACAGCAAGTACTACATTGTTTAAAACATCTCAAATGCTTTTGGATATA
tatatttcaaccaatcaaatgatTTGTTTACGTTTTGACTAAGGATACAG
TGAAATTATCATCGAAGAAAGATAGCCTGTCTTGTTGAGTAGCTAACAGT
ACCTACTGATGGAATTCACTCGAAATCGAAAAAatggacaatttttttca
aatagggAACAATTTTCCTTGGTAGAGGATGCCTTGAGGTATGTATATCT
GAAGTTTCTAGTTTGGTCTGGCTCTTATCACTGTGGTCTGGCTCTTTGAG
TTCAGcccatttttaaatttcatgtaCTCAAACATCGACTAGGTAGTTCT
TCCAGTTCTTGTTGTCTTTAACTTTGTTTACGTGATCAGCTAAAAGTTGG
CAGTTAATTTCGAAAAGTTTGCTTCTTGGTAATACTGAAGAAAGAGATGG
AAGAAGAATTTGAATTTCGTCGCAAACAAACAGCTGACTGCCTTAGTAAA
GTAGTGTAGATTATTATGCGGCCGGTGCGTGATATGATAAGCCGattcat
cataaaaagtaagacTGTAGAAAACTTAAAGAGACAGCTTCTTTTAAAGA
TGCTTTCAATGCTTTGGGAGTTGATATTACTAATGATGCTGTTGATGTTC
ATCCTGAGAAAATAGCTGTGAAAAGTGTAGAGTTGTTTGTACGAGTTTGA
AACAGCATTGAAAGGCACCCAGAGGCACCCAAGCTGAAAGTAGGAAAAAA
GAGAAAGCTAGGCATAAATCAACACAGTGTGtataaaacaacaacaacat
cagaCATTGATACCAGTGGTTTCGCAGATTGTGTTGATGGagagaaaatt
tcagaaattaaagAGACCGTGGCTTTGTTTAATTATTGATGCTGAAGACT
TTATATTTGTTATTGATTGGTTTTTTGAATTGGGTGAAATAAATGAGGAA
ATCAATGATAAGTTGGAAAGGCAATGTGATGAGGAGGGCCAACAAGCAAG
ACAATCAGCCTCGCATGTTTTAGCTTTCATAGTACGAAGTATCTACACTG
gattacttttgtttttgtttttttccctACTGCCATCTGCTTCAAGTGAT
GAGTTATTTCCTGTTGTCTGGGAGCTGTTGAAGTGTTGgaatatttgagt
ttgaaagtCAGGTGTTTGGTATCTGANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGTCAATGGTTTGTCTATTATTTCCAGAGGAAATACCTTAAA
TGATATCAATGATgatttgtttgaaatatttatcaCTACCAGgtgttgaa
attcaaaaaaaaaagattgaaattatATGGTCTAATTCCTTTCCTTTTAG
CTGGACAAACACTCAATCAGTTGGAACCATGTGGTACAACTCTGGGAGTT
CAAGAATACTAAAATCCTAGGGCTTTATACATGATCAAATTAACAAGAGA
ACACATCGACTAAATATGATGAACGTTTAAACTTGCAGCTCAGGTAACTT
AGATGATTACCATATTAACTCAAAAAAAATGCCTATATGTTATCTAATCA
GGCTAGGTAAAATCTGAGAATTAGGTTTGTCTGAAATAAAATGGCCTATT
TATGACAATAAAAATCCCATGATATGTATTCAGGTATTCAGTTGTTGTCA
ATGACATTGAAATGACTATAGCTACAAGTCTGGCCTCgataattttagtt
tgatgactAGCTTGATATAAacagaaattttgaataattttctgGGCTCA
ACATCAAAACTTCTTGAGTGGCTTTTTCAGCTGTGAAACACAAATATTGA
ATGTTTGGATGGTGACAAAGACTCTagcttattttcattatttgtcCCGG
ATTCCTTTTGAAAGTTACTTCAGTCTCAGTACTAGAGTCATGCTCTTCAG
TATCAAAGGCAAGCCCAAAACTAGAGGTACACAAAAGTTTGTCAGGATCT
GCGACAAAATTGCCTAAATGGACAGTATCCTAACCAAGATATGGCAACAA
GAAAACCAGCAAAACCTGCTCTCAGACAGTACACAGAAACAAAAGACAAA
TGttttgaggtaatttttatccTATATTTTTCAATGGGATTAGTTTTTGT
AGGTATTGTCACTAGCTGCTAGTTCCCTTCAAGGGTTACGTGTTACTATA
TCCAGATAATTCTACTCCATACAATATgtgaattgaaataaaatacatTG
CATGATTTTAAAGgagcatttttttttattagagatAATGTTGACATGAC
TGTTCACTTGTGTGTTGTGACCAAAttataactttttatcattttagtgG
CTGAcgaatacatttttgaaaagtgggAAAACAGAGGCACCTACACCTGG
CTTGCAAAGGAGGAAAGAAAAAAGGAGACTGTACCTGGCTATTCAAACTG
TTGAAGGGCTGCATGCAAACTACAGGTTTGTAATGATTTTGCATTCAAAG
GTTTTTTAGTGTGAAAtagtacaatgttaattttaagCAATCAATGTTTC
TGCGAGTGCTCCTGGCCTTGTATGTTTTAGAggtggtttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055840-exon-scaffold_262-1491911889:55233..55520 | TCONS_00055840-exon-scaffold_262-1491911889:55233..55520 | Clytia hemisphaerica | exon |
| TCONS_00055840-exon-scaffold_262-1510915933:55233..55520 | TCONS_00055840-exon-scaffold_262-1510915933:55233..55520 | Clytia hemisphaerica | exon |
| TCONS_00055840-exon-scaffold_262-1575043694:55233..55520 | TCONS_00055840-exon-scaffold_262-1575043694:55233..55520 | Clytia hemisphaerica | exon |
| TCONS_00055840-exon-scaffold_262-1491911889:56683..56825 | TCONS_00055840-exon-scaffold_262-1491911889:56683..56825 | Clytia hemisphaerica | exon |
| TCONS_00055840-exon-scaffold_262-1510915933:56683..56825 | TCONS_00055840-exon-scaffold_262-1510915933:56683..56825 | Clytia hemisphaerica | exon |
| TCONS_00055840-exon-scaffold_262-1575043694:56683..56825 | TCONS_00055840-exon-scaffold_262-1575043694:56683..56825 | Clytia hemisphaerica | exon |
| TCONS_00055840-exon-scaffold_262-1491911889:57630..57872 | TCONS_00055840-exon-scaffold_262-1491911889:57630..57872 | Clytia hemisphaerica | exon |
| TCONS_00055840-exon-scaffold_262-1510915933:57630..57872 | TCONS_00055840-exon-scaffold_262-1510915933:57630..57872 | Clytia hemisphaerica | exon |
| TCONS_00055840-exon-scaffold_262-1575043694:57630..57872 | TCONS_00055840-exon-scaffold_262-1575043694:57630..57872 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_262 | supercontig | scaffold_262:55233..57872 + |
Blast
The following BLAST results are available for this feature:
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