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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055850 ID=TCONS_00055850|Name=TCONS_00055850|organism=Clytia hemisphaerica|type=transcript|length=2150bp
cggcgggagagtttcgaagaaacggacgataccaatttggcgcATCTTCA
CTCAAACGATTTTGCCTGACTGACCTCTGAGAGAGGTCAGCGGGATTTTG
AAAAACCACGGAAAACAGAGCAAAATTTCGTGAAGTCAGGAGGTGTGCTT
TTGGACGTTTTGAGCGGGAATATCTTTTCGGATTTAGAAAACAAAACATC
TCTCAAATGACGATAGAAAGAGACGAAGAAAAATGGCTGCTGTGGATGTA
CAATTTTCTGAGGCTTTTGAAGCTATTAAGCTGAAGTTTGGTCTTCCTTC
TTTGAGGGAATATCAActtaagttttttgaaatttttgctgcaAATCCAA
AACAGgattttttcattggtcagccgACAGGAAATGGCAAAAGTCTTCTT
TTCCAAGGCTTGCCATTCTTTTTGTCTAAACTTCCACCTCTTGAGGGTGG
TTCATCAACAAGATTGGCCACAATTTCGCTGGTCATTGCCCCACTGACAG
CATTGATTGAAGACCagatttcaatttaaaaaaagaaagagatCATAGCA
AAACGCTTGTCTGAAGACCTGAAGTTGAGTGAGCTGAATGATGTCCACGT
CTTGTTTGTTTCACCTGAAACCATCCTATCAGATGTTGggagaaagtttt
tgaaaaagaaagaattcaaTTCAAGATTATCAGCTGTTTTTGTGGAtgaa
agtcattgcattgaaaaaTGGGGTACATCGGACAATCCAAAAAAGGCTGC
TTTTCGTCAGTGTTACTCAAGACTTGCTGAAATTCGGTCATTTGTGGCTC
GTAGATTACCGTTTGTTGCAATGACTGCTACTGCAACCAAGTCTACGCGT
GAATTTATTATTTCCAACCTTCAAATGATTACCCCAGAGTTGCTAATTAT
GGCACCTGGAAAGTCTAACATCACTTATTacgttaaaaaaacaaaaaatt
tagattGTGATACTTTATTTGCACCATTGATCAAAAATCTAAGAGATAAT
GGTTACAAAGCAGAGAGGGTCATTATCTTTTGTGACAGAAGCAGATTAAG
AGACCTATATgactcttttgaaaatgaattctACAATTATTATACGTATG
ATGAAAGACCATTTGCGATGTTTCATCGCACAACGAGACCAGAAATCAAG
GAAAGGATAATCAAAGCCTTTCAAGACCCTGATGGTATGGTGAGAATTTT
GATAGCCACCATAgcatcttttgaaaatgaattctACAATGATTATACGT
ATGATGAAAGACCATTTGCGATGTTTCATCGCACAACGAGACCAGAAATC
AAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGATGGTATGGTGAGAAT
TTTGATAGCCACCATAgcatcttttgaaaatgaattctACAATGATTATA
CGTATGATGAAAGACCATTTGCGATGTTTCATCGCACAACGAGACCAGAA
ATCAAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGATGGTATGGTGAG
AATTTTGATAGCCACCATAGCATTTGGAATGGGGATTGATTGCAAGGATC
TACATCGAATCATTCATTTTGGGGTGCCATCAGATCTTGATTCATATTTC
CAAGAATCTGGTAGAGCAGGAAGAGATGACGCTCAATGCTCTGCCTTACT
ACTGCTTTATCCACGCTGCATTTCTCGCTATGTGAAAAAGGATATTAGAG
ATTATGTGACAAACACTCAACGTTGTAGGAGAGAAATTCATCTTGAGGTT
TATGATTCAAAACCAAGCAAAATACAACCAAAACATACATGTTGTGACTT
TTGTCACCAAAGATGTGAGTGTGGAAATTGTGAATCACCTGAATTTTTAG
TAGATCTTCTACAATCGAGAGACGAAATCGAACTGCCAGATAATGAACTT
ATTAATGATGAAGTAGAAGAACAAGTGGAATGCCGGGAGGGAGAATCAGA
ATCGGAACCAGAAATATAGAATGATGAACACTAGAACTTTACCACATATG
ATATGTTAGAGGATAAAATATATAACATTTAGTTTTTTGTatatttcatt
ttagtttgataACAGCCAGTCAACTGTGGTCCTGGCAAATATATACATGG
GTTGTTAGGTGTCTGTTGCATTTTGTCCATCAACTGTAGTTTATTTCCTT Run BLAST on NCBI transcript from alignment at scaffold_263:124857..129168- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055850 ID=TCONS_00055850|Name=TCONS_00055850|organism=Clytia hemisphaerica|type=transcript|length=4312bp|location=Sequence derived from alignment at scaffold_263:124857..129168- (Clytia hemisphaerica)
CGGCGGGAGAGTTTCGAAGAAACGGACGATACCAATTTGGCGCATCTTCA
CTCAAACGATTTTGCCTGACTGACCTCTGAGAGAGGTCAGCGGGATTTTG
AAAAACCACGGAAAACAGAGCAAAATTTCGTGAAGTCAGGAGGTGTGCTT
TTGGACGTTTTGAGCGGGAATATCTTTTCGGATTTAGAAAACAAAACATC
TCTCAAATGACGATAGAAAGAGACGAAGAAAAATGGCTGCTGTGGATGTA
CAATTTTCTGAGGCTTTTGAAGCTATTAAGCTGAAGTTTGGTCTTCCTTC
TTTGAGGGAATATCAACTTAAGTTTTTTGAAATTTTTGCTGCAAATCCAA
AACAGGATTTTTTCATTGGTCAGCCGACAGGAAATGGCAAAAGTCTTCTT
TTCCAAGGCTTGCCATTCTTTTTGTCTAAACTTCCACCTCTTGAGGGTGG
TTCATCAACAAGATTGGCCACAATTTCGCTGGTCATTGCCCCACTGACAG
CATTGATTGAAGACCAGATTTCAATTTAAAAAAAGAAAGAGATCATAGCA
AAACGCTTGTCTGAAGACCTGGTAAGTTTGGTGTTGCTGGCTGGGCTGAC
AACCCAGGACAACCCAGGGGTACTAATTACCCTTGCTTGTCGACGGGGTG
CTCCACTGAGGCTCGAAAAATGTGTGAATGATTGACGCTGCCTGCCTGCC
TGCTGGTGCTGTCCGTCCTTCGGAATAGAAGGGTAGCTGATGTTTAGACG
AACCTATCAGACCTGGTAGACAGGGGTAGAAATATACCGTCAACGGCTCT
AACTTGGGACGAGTGGTCATATCATGAGATGGTTGACTTTCTGGTCTGTA
TTGACAACAACTTTGCTTTATATTAGATTTGCGACTATGTTAGTTAGATG
ACTTTGGAGGTTCAGTGAAATGATGGCCGAATTGCTGTCCCAAGTTTTAT
CAGACTGTTGTTAGAGCTGTTGACGGTAGCAAAAGGGGCGAAAAAAGCGA
ACAACAGGGGGTCTTTCTTTTGAAGAGGGGGTCGTAAAACAATTCTTTCT
TTTCTTTACTGATCACATTTCAAATAAATCACAGAGCTGACTAGACCATA
TAATTGCCATTCTATTATCTATTATCATGTGACTTAAAGGTACCTAAACA
AAAGATTAATGAAATTTCCACTTCTTAGCTAAAAGGGCTGAGGTTTCATT
ATTCTCAAAGATTTGGAATACATTTGGTCATAACTTTTCTCAATCATCGT
ATGGACTTTTTGTTTTTGTACAGAGTTTGATTAAAATGAATATTTGAAAA
TACACATTAAATAGATTCAAAAATGGCTTCCATTTTGGATTTATTTGGCC
AAAATTGACTGAAAAATCAAAAATGGCTTATCAGCTTCCCCTACGAAGAC
CAGTAGAACTAATTTAAAATTGCTGAATTTTTTATGAAATTGTTTTCCTT
ATATGAGTTACTAATACAAATATGAGTTACTATACAAAGTTTCAGCCCAA
GTGGCCAAGTACTTCTTCATATGGCAATTTAAGTTTTGGCCGACTTGCGC
TTTTAGGCAGAATGTGCAGTCACCATGGCTGTCTTGACCATATTTTTAGT
CCAAAATTTTTGAATTCATTTCTTAAATAGAATTTTAGGAATGTACATAG
GTTTAGCGGACACAGCAGAGAAAAATTCACTATGCAAGGAGCACCCCGGG
GTGAGGAGGGTTAAAGACCAGTCAGCGATGACACTACAACAACTTTGCAT
CTTATTTTTTGTTATAGAGAAATTTTAAACATATAAAAATTATCATGCAT
GACTTCATGGAAAAGTATCTAACACATAAAAACATTGACAATTAACACAA
ACACGAGATTTACACATTATACACATACACAACTAACAGATAAGTAGTTT
TCATAGATTTAAGTTTTGCATTGTTTACTGTCAACAGTTTCTAATTCCAA
AACTTGTTCAAAAAGATTTTTATTTTCAACTCAAAAAGATGGTTGTAACA
TGGGGCAAGTCTATCTTTTGATATCATCTGCTGTAAGTCTTATTTCTGTT
TAGAAGTTGAGTGAGCTGAATGATGTCCACGTCTTGTTTGTTTCACCTGA
AACCATCCTATCAGATGTTGGGAGAAAGTTTTTGAAAAAGAAAGAATTCA
ATTCAAGATTATCAGCTGTTTTTGTGGATGAAAGTCATTGCATTGAAAAA
TGGTATGAAACTTTTGAAACGTTCTAAGATGAAGGGTACTATGAAGGGGT
ACTTTCACCACCTCTAATGAGCAGGTCAATTCAGAAGGAATCTGTATTTT
AAAAAAATATAAAAAGTGGTGTTTTAATTTTCAGGACCAGAAGTTATTTT
TTAGAGATGATAGTCACCCAAATCCACACTAATTCATTTCTGTTAAAAGA
TAAGAAAAGATCATCCTTTTGACTCCAATTATCTATTAAATTAAGAAAAA
CACTGCACTATTATTGGCCAACTTGATACTTCAGGCGTACAAACTTTCCT
GAGCAGAAACTTAAACTTTCACAGTTTTTGTCAATTTTTCCCTTTTTCCT
AAAAGTTTATGCTCACAAAAGTTTGCACGCTTAAAGTATTGTTATTTTCA
CCACAAAGGGCACCAAGAACAAAATTTTATCAATGATACCTTAAGGGAAC
TAATTTTCGCAGAACTAGTTTTCACGGGAGCTAACTATATTTCGTGTTTT
GGGGTGTCTACCGCGAAAATTAGTTCCACAAAATGGGAAATACTAGAAAT
CCTTAAAAACCCCTAGGAAAATAAAAGAATTTAGGCAAAAAGTGGGTGTC
TACCGCAAAAATTAGTCTCCTTAAGGTATTTTTTTTATTATTTGCTAATT
GAGTCTAAGTCACCATTTTAATTTTCTTACAGGGGTACATCGGACAATCC
AAAAAAGGCTGCTTTTCGTCAGTGTTACTCAAGACTTGCTGAAATTCGGT
CATTTGTGGCTCGTAGATTACCGTTTGTTGCAATGACTGCTACTGCAACC
AAGTCTACGCGTGAATTTATTATTTCCAACCTTCAAATGATTACCCCAGA
GTTGCTAATTATGGCACCTGGAAAGTCTAACATCACTTATTACGTTAAAA
AAACAAAAAATTTAGATTGTGATACTTTATTTGCACCATTGATCAAAAAT
CTAAGAGATAATGGTTACAAAGCAGAGAGGGTCATTATCTTTTGTGACAG
AAGCAGATTAAGAGACCTATATGACTCTTTTGAAAATGAATTCTACAATT
ATTATACGTATGATGAAAGACCATTTGCGATGTTTCATCGCACAACGAGA
CCAGAAATCAAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGATGGTAT
GGTGAGAATTTTGATAGCCACCATAGCATCTTTTGAAAATGAATTCTACA
ATGATTATACGTATGATGAAAGACCATTTGCGATGTTTCATCGCACAACG
AGACCAGAAATCAAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGATGG
TATGGTGAGAATTTTGATAGCCACCATAGCATCTTTTGAAAATGAATTCT
ACAATGATTATACGTATGATGAAAGACCATTTGCGATGTTTCATCGCACA
ACGAGACCAGAAATCAAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGA
TGGTATGGTGAGAATTTTGATAGCCACCATAGCATTTGGAATGGGGATTG
ATTGCAAGGATCTACATCGAATCATTCATTTTGGGGTGCCATCAGATCTT
GATTCATATTTCCAAGAATCTGGTAGAGCAGGAAGAGATGACGCTCAATG
CTCTGCCTTACTACTGCTTTATCCACGCTGCATTTCTCGCTATGTGAAAA
AGGATATTAGAGATTATGTGACAAACACTCAACGTTGTAGGAGAGAAATT
CATCTTGAGGTTTATGATTCAAAACCAAGCAAAATACAACCAAAACATAC
ATGTTGTGACTTTTGTCACCAAAGATGTGAGTGTGGAAATTGTGAATCAC
CTGAATTTTTAGTAGATCTTCTACAATCGAGAGACGAAATCGAACTGCCA
GATAATGAACTTATTAATGATGAAGTAGAAGAACAAGTGGAATGCCGGGA
GGGAGAATCAGAATCGGAACCAGAAATATAGAATGATGAACACTAGAACT
TTACCACATATGATATGTTAGAGGATAAAATATATAACATTTAGTTTTTT
GTATATTTCATTTTAGTTTGATAACAGCCAGTCAACTGTGGTCCTGGCAA
ATATATACATGGGTTGTTAGGTGTCTGTTGCATTTTGTCCATCAACTGTA
GTTTATTTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055850-exon-scaffold_263-1575043694:128598..129168 | TCONS_00055850-exon-scaffold_263-1575043694:128598..129168 | Clytia hemisphaerica | exon |
| TCONS_00055850-exon-scaffold_263-1575043694:126967..127115 | TCONS_00055850-exon-scaffold_263-1575043694:126967..127115 | Clytia hemisphaerica | exon |
| TCONS_00055850-exon-scaffold_263-1575043694:124857..126286 | TCONS_00055850-exon-scaffold_263-1575043694:124857..126286 | Clytia hemisphaerica | exon |
| TCONS_00055850-exon-scaffold_263-1510915933:128598..129168 | TCONS_00055850-exon-scaffold_263-1510915933:128598..129168 | Clytia hemisphaerica | exon |
| TCONS_00055850-exon-scaffold_263-1510915933:126967..127115 | TCONS_00055850-exon-scaffold_263-1510915933:126967..127115 | Clytia hemisphaerica | exon |
| TCONS_00055850-exon-scaffold_263-1510915933:124857..126286 | TCONS_00055850-exon-scaffold_263-1510915933:124857..126286 | Clytia hemisphaerica | exon |
| TCONS_00055850-exon-scaffold_263-1491911889:128598..129168 | TCONS_00055850-exon-scaffold_263-1491911889:128598..129168 | Clytia hemisphaerica | exon |
| TCONS_00055850-exon-scaffold_263-1491911889:126967..127115 | TCONS_00055850-exon-scaffold_263-1491911889:126967..127115 | Clytia hemisphaerica | exon |
| TCONS_00055850-exon-scaffold_263-1491911889:124857..126286 | TCONS_00055850-exon-scaffold_263-1491911889:124857..126286 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_263 | supercontig | scaffold_263:124857..129168 - |
Blast
BLAST of TCONS_00055850 vs. Swiss-Prot (Human)
Match: BLM (Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.639e-20 Identity = 99/341 (29.03%), Postives = 162/341 (47.51%), Query Frame = 2
Query: 248 VQFSEAFEAIKL---KFGLPSLREYQLKFFEIFAANPKQDFFIGQPTGNGKSLLFQGLPFFLSKLPPLEGGSSTRLATISLVIAPLTALIEDQXXXXXXXXXXXXRLSEDLKLSELNDVHV-----------LFVSPETILSDVGRKFLKKKEFNSRLSAVFV-DESHCIEKWGTSDNPKKAAFRQCYSRLAEIRSFVARRLPFVAMTATATKSTREFIISNLQMITPELLIMAPGKSNITYYV--KKTKNLDCDTLFAPLIKNLRDNGYKAERVIIFC-DRSRLRDLYDSFENEFYNYYTYDERPFAMFHRTTRPEIKERIIKAFQDPDGMVRILIATIA 1216
+ F E +K+ KFGL + R QL+ I AA +D FI PTG GKSL +Q LP +S +++VI+PL +LI DQ+ +I A L+ D SE ++++ L+V+PE I + + + +L A FV DE+HC+ +WG FRQ Y R+ +R +P +A+TATA ++ I++ L+++ P++ M+ + N+ YYV KK K + D L + D+G II+C R + D+ + + Y A + R E++++ I + DG +++ ATIA
Sbjct: 647 LSFPHTKEMMKIFHKKFGLHNFRTNQLE--AINAALLGEDCFILMPTGGGKSLCYQ-LPACVS-------------PGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHD-------FRQDYKRMNMLRQKFPS-VPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYDSG------IIYCLSRRECDTMADTLQRDGLAALAY----HAGLSDSARDEVQQKWI----NQDG-CQVICATIA 948
The following BLAST results are available for this feature:
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