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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055851 ID=TCONS_00055851|Name=TCONS_00055851|organism=Clytia hemisphaerica|type=transcript|length=2147bp
cggcgggagagtttcgaagaaacggacgataccaatttggcgcATCTTCA
CTCAAACGATTTTGCCTGACTGACCTCTGAGAGAGGTCAGCGGGATTTTG
AAAAACCACGGAAAACAGAGCAAAATTTCGTGAAGTCAGGAGGTGTGCTT
TTGGACGTTTTGAGCGGGAATATCTTTTCGGATTTAGAAAACAAAACATC
TCTCAAATGACGATAGAAAGAGACGAAGAAAAATGGCTGCTGTGGATGTA
CAATTTTCTGAGGCTTTTGAAGCTATTAAGCTGAAGTTTGGTCTTCCTTC
TTTGAGGGAATATCAActtaagttttttgaaatttttgctgcaAATCCAA
AACAGgattttttcattggtcagccgACAGGAAATGGCAAAAGTCTTCTT
TTCCAAGGCTTGCCATTCTTTTTGTCTAAACTTCCACCTCTTGAGGGTGG
TTCATCAACAAGATTGGCCACAATTTCGCTGGTCATTGCCCCACTGACAG
CATTGATTGAAGACCagatttcaatttaaaaaaagaaagagatCATAGCA
AAACGCTTGTCTGAAGACCTGTTGAGTGAGCTGAATGATGTCCACGTCTT
GTTTGTTTCACCTGAAACCATCCTATCAGATGTTGggagaaagtttttga
aaaagaaagaattcaaTTCAAGATTATCAGCTGTTTTTGTGGAtgaaagt
cattgcattgaaaaaTGGGGTACATCGGACAATCCAAAAAAGGCTGCTTT
TCGTCAGTGTTACTCAAGACTTGCTGAAATTCGGTCATTTGTGGCTCGTA
GATTACCGTTTGTTGCAATGACTGCTACTGCAACCAAGTCTACGCGTGAA
TTTATTATTTCCAACCTTCAAATGATTACCCCAGAGTTGCTAATTATGGC
ACCTGGAAAGTCTAACATCACTTATTacgttaaaaaaacaaaaaatttag
attGTGATACTTTATTTGCACCATTGATCAAAAATCTAAGAGATAATGGT
TACAAAGCAGAGAGGGTCATTATCTTTTGTGACAGAAGCAGATTAAGAGA
CCTATATgactcttttgaaaatgaattctACAATTATTATACGTATGATG
AAAGACCATTTGCGATGTTTCATCGCACAACGAGACCAGAAATCAAGGAA
AGGATAATCAAAGCCTTTCAAGACCCTGATGGTATGGTGAGAATTTTGAT
AGCCACCATAgcatcttttgaaaatgaattctACAATGATTATACGTATG
ATGAAAGACCATTTGCGATGTTTCATCGCACAACGAGACCAGAAATCAAG
GAAAGGATAATCAAAGCCTTTCAAGACCCTGATGGTATGGTGAGAATTTT
GATAGCCACCATAgcatcttttgaaaatgaattctACAATGATTATACGT
ATGATGAAAGACCATTTGCGATGTTTCATCGCACAACGAGACCAGAAATC
AAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGATGGTATGGTGAGAAT
TTTGATAGCCACCATAGCATTTGGAATGGGGATTGATTGCAAGGATCTAC
ATCGAATCATTCATTTTGGGGTGCCATCAGATCTTGATTCATATTTCCAA
GAATCTGGTAGAGCAGGAAGAGATGACGCTCAATGCTCTGCCTTACTACT
GCTTTATCCACGCTGCATTTCTCGCTATGTGAAAAAGGATATTAGAGATT
ATGTGACAAACACTCAACGTTGTAGGAGAGAAATTCATCTTGAGGTTTAT
GATTCAAAACCAAGCAAAATACAACCAAAACATACATGTTGTGACTTTTG
TCACCAAAGATGTGAGTGTGGAAATTGTGAATCACCTGAATTTTTAGTAG
ATCTTCTACAATCGAGAGACGAAATCGAACTGCCAGATAATGAACTTATT
AATGATGAAGTAGAAGAACAAGTGGAATGCCGGGAGGGAGAATCAGAATC
GGAACCAGAAATATAGAATGATGAACACTAGAACTTTACCACATATGATA
TGTTAGAGGATAAAATATATAACATTTAGTTTTTTGTatatttcatttta
gtttgataACAGCCAGTCAACTGTGGTCCTGGCAAATATATACATGGGTT
GTTAGGTGTCTGTTGCATTTTGTCCATCAACTGTAGTTTATTTCCTT Run BLAST on NCBI protein sequence of TCONS_00055851-protein >TCONS_00055851-protein ID=TCONS_00055851-protein|Name=TCONS_00055851-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MTATATKSTREFIISNLQMITPELLIMAPGKSNITYYVKKTKNLDCDTLF
APLIKNLRDNGYKAERVIIFCDRSRLRDLYDSFENEFYNYYTYDERPFAM
FHRTTRPEIKERIIKAFQDPDGMVRILIATIASFENEFYNDYTYDERPFA
MFHRTTRPEIKERIIKAFQDPDGMVRILIATIASFENEFYNDYTYDERPF
AMFHRTTRPEIKERIIKAFQDPDGMVRILIATIAFGMGIDCKDLHRIIHF
GVPSDLDSYFQESGRAGRDDAQCSALLLLYPRCISRYVKKDIRDYVTNTQ
RCRREIHLEVYDSKPSKIQPKHTCCDFCHQRCECGNCESPEFLVDLLQSR
DEIELPDNELINDEVEEQVECREGESESEPEI Run BLAST on NCBI transcript from alignment at scaffold_263:124857..129168- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055851 ID=TCONS_00055851|Name=TCONS_00055851|organism=Clytia hemisphaerica|type=transcript|length=4312bp|location=Sequence derived from alignment at scaffold_263:124857..129168- (Clytia hemisphaerica)
CGGCGGGAGAGTTTCGAAGAAACGGACGATACCAATTTGGCGCATCTTCA
CTCAAACGATTTTGCCTGACTGACCTCTGAGAGAGGTCAGCGGGATTTTG
AAAAACCACGGAAAACAGAGCAAAATTTCGTGAAGTCAGGAGGTGTGCTT
TTGGACGTTTTGAGCGGGAATATCTTTTCGGATTTAGAAAACAAAACATC
TCTCAAATGACGATAGAAAGAGACGAAGAAAAATGGCTGCTGTGGATGTA
CAATTTTCTGAGGCTTTTGAAGCTATTAAGCTGAAGTTTGGTCTTCCTTC
TTTGAGGGAATATCAACTTAAGTTTTTTGAAATTTTTGCTGCAAATCCAA
AACAGGATTTTTTCATTGGTCAGCCGACAGGAAATGGCAAAAGTCTTCTT
TTCCAAGGCTTGCCATTCTTTTTGTCTAAACTTCCACCTCTTGAGGGTGG
TTCATCAACAAGATTGGCCACAATTTCGCTGGTCATTGCCCCACTGACAG
CATTGATTGAAGACCAGATTTCAATTTAAAAAAAGAAAGAGATCATAGCA
AAACGCTTGTCTGAAGACCTGGTAAGTTTGGTGTTGCTGGCTGGGCTGAC
AACCCAGGACAACCCAGGGGTACTAATTACCCTTGCTTGTCGACGGGGTG
CTCCACTGAGGCTCGAAAAATGTGTGAATGATTGACGCTGCCTGCCTGCC
TGCTGGTGCTGTCCGTCCTTCGGAATAGAAGGGTAGCTGATGTTTAGACG
AACCTATCAGACCTGGTAGACAGGGGTAGAAATATACCGTCAACGGCTCT
AACTTGGGACGAGTGGTCATATCATGAGATGGTTGACTTTCTGGTCTGTA
TTGACAACAACTTTGCTTTATATTAGATTTGCGACTATGTTAGTTAGATG
ACTTTGGAGGTTCAGTGAAATGATGGCCGAATTGCTGTCCCAAGTTTTAT
CAGACTGTTGTTAGAGCTGTTGACGGTAGCAAAAGGGGCGAAAAAAGCGA
ACAACAGGGGGTCTTTCTTTTGAAGAGGGGGTCGTAAAACAATTCTTTCT
TTTCTTTACTGATCACATTTCAAATAAATCACAGAGCTGACTAGACCATA
TAATTGCCATTCTATTATCTATTATCATGTGACTTAAAGGTACCTAAACA
AAAGATTAATGAAATTTCCACTTCTTAGCTAAAAGGGCTGAGGTTTCATT
ATTCTCAAAGATTTGGAATACATTTGGTCATAACTTTTCTCAATCATCGT
ATGGACTTTTTGTTTTTGTACAGAGTTTGATTAAAATGAATATTTGAAAA
TACACATTAAATAGATTCAAAAATGGCTTCCATTTTGGATTTATTTGGCC
AAAATTGACTGAAAAATCAAAAATGGCTTATCAGCTTCCCCTACGAAGAC
CAGTAGAACTAATTTAAAATTGCTGAATTTTTTATGAAATTGTTTTCCTT
ATATGAGTTACTAATACAAATATGAGTTACTATACAAAGTTTCAGCCCAA
GTGGCCAAGTACTTCTTCATATGGCAATTTAAGTTTTGGCCGACTTGCGC
TTTTAGGCAGAATGTGCAGTCACCATGGCTGTCTTGACCATATTTTTAGT
CCAAAATTTTTGAATTCATTTCTTAAATAGAATTTTAGGAATGTACATAG
GTTTAGCGGACACAGCAGAGAAAAATTCACTATGCAAGGAGCACCCCGGG
GTGAGGAGGGTTAAAGACCAGTCAGCGATGACACTACAACAACTTTGCAT
CTTATTTTTTGTTATAGAGAAATTTTAAACATATAAAAATTATCATGCAT
GACTTCATGGAAAAGTATCTAACACATAAAAACATTGACAATTAACACAA
ACACGAGATTTACACATTATACACATACACAACTAACAGATAAGTAGTTT
TCATAGATTTAAGTTTTGCATTGTTTACTGTCAACAGTTTCTAATTCCAA
AACTTGTTCAAAAAGATTTTTATTTTCAACTCAAAAAGATGGTTGTAACA
TGGGGCAAGTCTATCTTTTGATATCATCTGCTGTAAGTCTTATTTCTGTT
TAGAAGTTGAGTGAGCTGAATGATGTCCACGTCTTGTTTGTTTCACCTGA
AACCATCCTATCAGATGTTGGGAGAAAGTTTTTGAAAAAGAAAGAATTCA
ATTCAAGATTATCAGCTGTTTTTGTGGATGAAAGTCATTGCATTGAAAAA
TGGTATGAAACTTTTGAAACGTTCTAAGATGAAGGGTACTATGAAGGGGT
ACTTTCACCACCTCTAATGAGCAGGTCAATTCAGAAGGAATCTGTATTTT
AAAAAAATATAAAAAGTGGTGTTTTAATTTTCAGGACCAGAAGTTATTTT
TTAGAGATGATAGTCACCCAAATCCACACTAATTCATTTCTGTTAAAAGA
TAAGAAAAGATCATCCTTTTGACTCCAATTATCTATTAAATTAAGAAAAA
CACTGCACTATTATTGGCCAACTTGATACTTCAGGCGTACAAACTTTCCT
GAGCAGAAACTTAAACTTTCACAGTTTTTGTCAATTTTTCCCTTTTTCCT
AAAAGTTTATGCTCACAAAAGTTTGCACGCTTAAAGTATTGTTATTTTCA
CCACAAAGGGCACCAAGAACAAAATTTTATCAATGATACCTTAAGGGAAC
TAATTTTCGCAGAACTAGTTTTCACGGGAGCTAACTATATTTCGTGTTTT
GGGGTGTCTACCGCGAAAATTAGTTCCACAAAATGGGAAATACTAGAAAT
CCTTAAAAACCCCTAGGAAAATAAAAGAATTTAGGCAAAAAGTGGGTGTC
TACCGCAAAAATTAGTCTCCTTAAGGTATTTTTTTTATTATTTGCTAATT
GAGTCTAAGTCACCATTTTAATTTTCTTACAGGGGTACATCGGACAATCC
AAAAAAGGCTGCTTTTCGTCAGTGTTACTCAAGACTTGCTGAAATTCGGT
CATTTGTGGCTCGTAGATTACCGTTTGTTGCAATGACTGCTACTGCAACC
AAGTCTACGCGTGAATTTATTATTTCCAACCTTCAAATGATTACCCCAGA
GTTGCTAATTATGGCACCTGGAAAGTCTAACATCACTTATTACGTTAAAA
AAACAAAAAATTTAGATTGTGATACTTTATTTGCACCATTGATCAAAAAT
CTAAGAGATAATGGTTACAAAGCAGAGAGGGTCATTATCTTTTGTGACAG
AAGCAGATTAAGAGACCTATATGACTCTTTTGAAAATGAATTCTACAATT
ATTATACGTATGATGAAAGACCATTTGCGATGTTTCATCGCACAACGAGA
CCAGAAATCAAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGATGGTAT
GGTGAGAATTTTGATAGCCACCATAGCATCTTTTGAAAATGAATTCTACA
ATGATTATACGTATGATGAAAGACCATTTGCGATGTTTCATCGCACAACG
AGACCAGAAATCAAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGATGG
TATGGTGAGAATTTTGATAGCCACCATAGCATCTTTTGAAAATGAATTCT
ACAATGATTATACGTATGATGAAAGACCATTTGCGATGTTTCATCGCACA
ACGAGACCAGAAATCAAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGA
TGGTATGGTGAGAATTTTGATAGCCACCATAGCATTTGGAATGGGGATTG
ATTGCAAGGATCTACATCGAATCATTCATTTTGGGGTGCCATCAGATCTT
GATTCATATTTCCAAGAATCTGGTAGAGCAGGAAGAGATGACGCTCAATG
CTCTGCCTTACTACTGCTTTATCCACGCTGCATTTCTCGCTATGTGAAAA
AGGATATTAGAGATTATGTGACAAACACTCAACGTTGTAGGAGAGAAATT
CATCTTGAGGTTTATGATTCAAAACCAAGCAAAATACAACCAAAACATAC
ATGTTGTGACTTTTGTCACCAAAGATGTGAGTGTGGAAATTGTGAATCAC
CTGAATTTTTAGTAGATCTTCTACAATCGAGAGACGAAATCGAACTGCCA
GATAATGAACTTATTAATGATGAAGTAGAAGAACAAGTGGAATGCCGGGA
GGGAGAATCAGAATCGGAACCAGAAATATAGAATGATGAACACTAGAACT
TTACCACATATGATATGTTAGAGGATAAAATATATAACATTTAGTTTTTT
GTATATTTCATTTTAGTTTGATAACAGCCAGTCAACTGTGGTCCTGGCAA
ATATATACATGGGTTGTTAGGTGTCTGTTGCATTTTGTCCATCAACTGTA
GTTTATTTCCTT Coding sequence (CDS) from alignment at scaffold_263:124857..129168- >TCONS_00055851 ID=TCONS_00055851|Name=TCONS_00055851|organism=Clytia hemisphaerica|type=CDS|length=1149bp|location=Sequence derived from alignment at scaffold_263:124857..129168- (Clytia hemisphaerica)
ATGACTGCTACTGCAACCAAGTCTACGCGTGAATTTATTATTTCCAACCT
TCAAATGATTACCCCAGAGTTGCTAATTATGGCACCTGGAAAGTCTAACA
TCACTTATTACGTTAAAAAAACAAAAAATTTAGATTGTGATACTTTATTT
GCACCATTGATCAAAAATCTAAGAGATAATGGTTACAAAGCAGAGAGGGT
CATTATCTTTTGTGACAGAAGCAGATTAAGAGACCTATATGACTCTTTTG
AAAATGAATTCTACAATTATTATACGTATGATGAAAGACCATTTGCGATG
TTTCATCGCACAACGAGACCAGAAATCAAGGAAAGGATAATCAAAGCCTT
TCAAGACCCTGATGGTATGGTGAGAATTTTGATAGCCACCATAGCATCTT
TTGAAAATGAATTCTACAATGATTATACGTATGATGAAAGACCATTTGCG
ATGTTTCATCGCACAACGAGACCAGAAATCAAGGAAAGGATAATCAAAGC
CTTTCAAGACCCTGATGGTATGGTGAGAATTTTGATAGCCACCATAGCAT
CTTTTGAAAATGAATTCTACAATGATTATACGTATGATGAAAGACCATTT
GCGATGTTTCATCGCACAACGAGACCAGAAATCAAGGAAAGGATAATCAA
AGCCTTTCAAGACCCTGATGGTATGGTGAGAATTTTGATAGCCACCATAG
CATTTGGAATGGGGATTGATTGCAAGGATCTACATCGAATCATTCATTTT
GGGGTGCCATCAGATCTTGATTCATATTTCCAAGAATCTGGTAGAGCAGG
AAGAGATGACGCTCAATGCTCTGCCTTACTACTGCTTTATCCACGCTGCA
TTTCTCGCTATGTGAAAAAGGATATTAGAGATTATGTGACAAACACTCAA
CGTTGTAGGAGAGAAATTCATCTTGAGGTTTATGATTCAAAACCAAGCAA
AATACAACCAAAACATACATGTTGTGACTTTTGTCACCAAAGATGTGAGT
GTGGAAATTGTGAATCACCTGAATTTTTAGTAGATCTTCTACAATCGAGA
GACGAAATCGAACTGCCAGATAATGAACTTATTAATGATGAAGTAGAAGA
ACAAGTGGAATGCCGGGAGGGAGAATCAGAATCGGAACCAGAAATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00055851-exon-scaffold_263-1575043694:128598..129168 | TCONS_00055851-exon-scaffold_263-1575043694:128598..129168 | Clytia hemisphaerica | exon |
| TCONS_00055851-exon-scaffold_263-1575043694:126967..127112 | TCONS_00055851-exon-scaffold_263-1575043694:126967..127112 | Clytia hemisphaerica | exon |
| TCONS_00055851-exon-scaffold_263-1575043694:124857..126286 | TCONS_00055851-exon-scaffold_263-1575043694:124857..126286 | Clytia hemisphaerica | exon |
| TCONS_00055851-exon-scaffold_263-1510915933:128598..129168 | TCONS_00055851-exon-scaffold_263-1510915933:128598..129168 | Clytia hemisphaerica | exon |
| TCONS_00055851-exon-scaffold_263-1510915933:126967..127112 | TCONS_00055851-exon-scaffold_263-1510915933:126967..127112 | Clytia hemisphaerica | exon |
| TCONS_00055851-exon-scaffold_263-1510915933:124857..126286 | TCONS_00055851-exon-scaffold_263-1510915933:124857..126286 | Clytia hemisphaerica | exon |
| TCONS_00055851-exon-scaffold_263-1491911889:128598..129168 | TCONS_00055851-exon-scaffold_263-1491911889:128598..129168 | Clytia hemisphaerica | exon |
| TCONS_00055851-exon-scaffold_263-1491911889:126967..127112 | TCONS_00055851-exon-scaffold_263-1491911889:126967..127112 | Clytia hemisphaerica | exon |
| TCONS_00055851-exon-scaffold_263-1491911889:124857..126286 | TCONS_00055851-exon-scaffold_263-1491911889:124857..126286 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_263 | supercontig | scaffold_263:124857..129168 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00055851 vs. Swiss-Prot (Human)
Match: BLM (Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 5.757e-19 Identity = 99/341 (29.03%), Postives = 162/341 (47.51%), Query Frame = 2
Query: 248 VQFSEAFEAIKL---KFGLPSLREYQLKFFEIFAANPKQDFFIGQPTGNGKSLLFQGLPFFLSKLPPLEGGSSTRLATISLVIAPLTALIEDQXXXXXXXXXXXXRLSEDLL-SELNDVHV-----------LFVSPETILSDVGRKFLKKKEFNSRLSAVFV-DESHCIEKWGTSDNPKKAAFRQCYSRLAEIRSFVARRLPFVAMTATATKSTREFIISNLQMITPELLIMAPGKSNITYYV--KKTKNLDCDTLFAPLIKNLRDNGYKAERVIIFC-DRSRLRDLYDSFENEFYNYYTYDERPFAMFHRTTRPEIKERIIKAFQDPDGMVRILIATIA 1213
+ F E +K+ KFGL + R QL+ I AA +D FI PTG GKSL +Q LP +S +++VI+PL +LI DQ+ +I A L+ D SE ++++ L+V+PE I + + + +L A FV DE+HC+ +WG FRQ Y R+ +R +P +A+TATA ++ I++ L+++ P++ M+ + N+ YYV KK K + D L + D+G II+C R + D+ + + Y A + R E++++ I + DG +++ ATIA
Sbjct: 647 LSFPHTKEMMKIFHKKFGLHNFRTNQLE--AINAALLGEDCFILMPTGGGKSLCYQ-LPACVS-------------PGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHD-------FRQDYKRMNMLRQKFPS-VPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYDSG------IIYCLSRRECDTMADTLQRDGLAALAY----HAGLSDSARDEVQQKWI----NQDG-CQVICATIA 948
The following BLAST results are available for this feature:
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