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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055891 ID=TCONS_00055891|Name=TCONS_00055891|organism=Clytia hemisphaerica|type=transcript|length=2581bpRun BLAST on NCBI protein sequence of TCONS_00055891-protein >TCONS_00055891-protein ID=TCONS_00055891-protein|Name=TCONS_00055891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp MHKSDRDIGREVYAHRTSMPSSRKTGSSGQRSSHGSRGSSSSGSNVLMVGRun BLAST on NCBI transcript from alignment at scaffold_265:356..17099+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055891 ID=TCONS_00055891|Name=TCONS_00055891|organism=Clytia hemisphaerica|type=transcript|length=16744bp|location=Sequence derived from alignment at scaffold_265:356..17099+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_265:356..17099+ >TCONS_00055891 ID=TCONS_00055891|Name=TCONS_00055891|organism=Clytia hemisphaerica|type=CDS|length=14619bp|location=Sequence derived from alignment at scaffold_265:356..17099+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055891 vs. Swiss-Prot (Human)
Match: KC1G3 (Casein kinase I isoform gamma-3 OS=Homo sapiens GN=CSNK1G3 PE=1 SV=2) HSP 1 Score: 565.459 bits (1456), Expect = 0.000e+0 Identity = 280/394 (71.07%), Postives = 318/394 (80.71%), Query Frame = 1
Query: 340 VLMVGPNFRVGRKIGCGNFGELRLGKNLYTNEHVAIKLEPLKTRAPQLHLEYRFYKALGQSADGVPQVFYFGPCGKYNAMVMELLGPSLEDLFDLCERQFSMKTVLLIAMQLIRRLEYVHTKHMIYRDIKPENFLIGRRQNVTEKLIYIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRSTPIEVLCESFPEEWATYLRYVRRLDFFETPDYDYLHSLFRNLFEKKGYKDDGEFDWTHKTIPSTSTSTTEVAKAQPSR------------PDPRATNNDAWTSLPKNQSNSMLRPQI-----GGSVQVVRSTTGELGGDDKNERKSAVPLNAPPDVEV 1470
VLMVGPNFRVG+KIGCGNFGELRLGKNLYTNE+VAIKLEP+K+RAPQLHLEYRFYK LG S DG+PQV+YFGPCGKYNAMV+ELLGPSLEDLFDLC+R FS+KTVL+IA+QLI R+EYVH+K++IYRD+KPENFLIGR N T+++I+IIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKR+TPIEVLCE+FP E ATYLRYVRRLDFFE PDYDYL LF +LF++KGY D E+DW K +P+ + + +R + A + AW S N + LR + GGSVQVV ST GEL DD +S P+ AP +VEV
Sbjct: 36 VLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLG-SGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKMQQSKNQSADHRAAWDSQQANPHH--LRAHLAADRHGGSVQVVSSTNGELNTDDPTAGRSNAPITAPTEVEV 425 The following BLAST results are available for this feature:
BLAST of TCONS_00055891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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