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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055899 ID=TCONS_00055899|Name=TCONS_00055899|organism=Clytia hemisphaerica|type=transcript|length=4741bpRun BLAST on NCBI protein sequence of TCONS_00055899-protein >TCONS_00055899-protein ID=TCONS_00055899-protein|Name=TCONS_00055899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=739bp MTTDLKQYSKTYHPMTSSSSSSGKHRRYKRRQTHIFIKLVCITVTLTTVLRun BLAST on NCBI transcript from alignment at scaffold_265:49487..81127- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055899 ID=TCONS_00055899|Name=TCONS_00055899|organism=Clytia hemisphaerica|type=transcript|length=31641bp|location=Sequence derived from alignment at scaffold_265:49487..81127- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_265:49487..81127- >TCONS_00055899 ID=TCONS_00055899|Name=TCONS_00055899|organism=Clytia hemisphaerica|type=CDS|length=17760bp|location=Sequence derived from alignment at scaffold_265:49487..81127- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055899 vs. Swiss-Prot (Human)
Match: NCKX2 (Sodium/potassium/calcium exchanger 2 OS=Homo sapiens GN=SLC24A2 PE=1 SV=1) HSP 1 Score: 260.381 bits (664), Expect = 4.645e-73 Identity = 118/200 (59.00%), Postives = 160/200 (80.00%), Query Frame = 1
Query: 2578 VDLSWPDEIFERIFYVIKAPLLFVMVLTVPDVRRPKFKKLFPLTFTLSIVWIAVFSYLMLWWASEIGRAAGIDVEIMGLTFIAAGTSIPDLITSVVVARQGLGDMAVSSSIGSNIFDVTVGLPLPWLAYSMSKSFKDVVVKNSGLFCSTILLFLMLVAVVITIALSKWRMTKMLGGIMFGLYVVFITLTLLLQLDVFACP 3177
+ L+WP E +++ ++I P++F + +T+PDVR+P +K FP+TF SI WIAVFSYLM+WWA ++G GI EIMGLT +AAGTSIPDLITSV+VAR+GLGDMAVSSS+GSNIFD+TVGLPLPWL Y++ F+ V V ++GLFC+ +LLF+ML+ V+++IAL KWRM K+LG IMFGLY VF+ +++LL+ + CP
Sbjct: 459 LSLAWPSETRKQVTFLIVFPIVFPLWITLPDVRKPSSRKFFPITFFGSITWIAVFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPLPWLLYTVIHRFQPVAVSSNGLFCAIVLLFIMLLFVILSIALCKWRMNKILGFIMFGLYFVFLVVSVLLEDRILTCP 658 HSP 2 Score: 244.202 bits (622), Expect = 1.260e-67 Identity = 164/397 (41.31%), Postives = 231/397 (58.19%), Query Frame = 1
Query: 1207 YQSRKLLNVNNETT--TTKAPVIPQG---------IGDYPKDLFTVEQKKNGWIALHVIGVLYMFLALAIICDEFFVPALHVISSILKISDDVAGATFMAAGGSAPELFTSIIGVFFSDSQVGFGTIVGSAVFNVLFVIGMCAMCSKTLLNLTWWPLLRDXXXXXXXXXXXXXXXXXXXXXWHESLGLFLVYIAYVIFMIKNSSIEMAVKAYISKKTRASSVTP-------IIDEKNENGFLSLPSMFSKNS--------FRNGAIQLVIHTLDPIAEA-GVDDKLQKIKDHYDTISTDQQKGLSTSLLDEKELTSPNQSETTILHDDYNSQRGPSETSVAHSRISHGKE-EIEMMERNNQNSSTEAINGHATKPVPNNDAKNHPNSTQDSRPNSVA 2313
Y R LL++N++ T + P+ +G GDYPKD+F++E+++ G I LHVIG++YMF+ALAI+CDEFFVP+L VI+ L ISDDVAGATFMAAGGSAPELFTS+IGVF + S VG GTIVGSAVFN+LFVIGMCA+ S+ +LNLTWWPL RD FYI+ LI+LIIFF D+ I W ESL L Y YV+FM N +E VK I++ P +K+E + P + S RN QL+IHTLDP+AE G KL+ +YDT++ + + S+L ++ H D N ++ + V + + ++EM ++ + + NG+ + + +A+ ++ +P S+A
Sbjct: 82 YHQRTLLDLNDKILDYTPQPPLSKEGESENSTDHAQGDYPKDIFSLEERRKGAIILHVIGMIYMFIALAIVCDEFFVPSLTVITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIVGSAVFNILFVIGMCALFSREILNLTWWPLFRDVSFYIVDLIMLIIFFLDNVIMWWESLLLLTAYFCYVVFMKFNVQVEKWVKQMINRNKVVKVTAPEAQAKPSAARDKDEPTLPAKPRLQRGGSSASLHNSLMRNSIFQLMIHTLDPLAEELGSYGKLK----YYDTMTEEGRFREKASIL--------HKIAKKKCHVDENERQNGAANHVEKIELPNSTSTDVEMTPSSDASEPVQ--NGNLSHNIEGAEAQT--ADEEEDQPLSLA 462 The following BLAST results are available for this feature:
BLAST of TCONS_00055899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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